-
1
-
-
2942550662
-
Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes
-
Adkins, M.W., Howar, S.R., and Tyler, J.K. 2004. Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes. Mol Cell 14: 657-666.
-
(2004)
Mol Cell
, vol.14
, pp. 657-666
-
-
Adkins, M.W.1
Howar, S.R.2
Tyler, J.K.3
-
2
-
-
0036299092
-
The histone variant H3.3 marks active chromatin by replicationindependent nucleosome assembly
-
Ahmad, K. and Henikoff, S. 2002. The histone variant H3.3 marks active chromatin by replicationindependent nucleosome assembly. Mol Cell 9: 1191-1200.
-
(2002)
Mol Cell
, vol.9
, pp. 1191-1200
-
-
Ahmad, K.1
Henikoff, S.2
-
3
-
-
34047111213
-
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
-
Albert, I., Mavrich, T.N., Tomsho, L.P., Qi, J., Zanton, S.J., Schuster, S.C., and Pugh, B.F. 2007a. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446: 572-576.
-
(2007)
Nature
, vol.446
, pp. 572-576
-
-
Albert, I.1
Mavrich, T.N.2
Tomsho, L.P.3
Qi, J.4
Zanton, S.J.5
Schuster, S.C.6
Pugh, B.F.7
-
4
-
-
35748951614
-
Direct selection of human genomic loci by microarray hybridization
-
Albert, T.J., Molla, M.N., Muzny, D.M., Nazareth, L., Wheeler, D., Song, X., Richmond, T.A., Middle, C.M., Rodesch, M.J., Packard, C.J., Weinstock, G.M., and Gibbs, R.A. 2007b. Direct selection of human genomic loci by microarray hybridization. Nat Methods 4: 903-905.
-
(2007)
Nat Methods
, vol.4
, pp. 903-905
-
-
Albert, T.J.1
Molla, M.N.2
Muzny, D.M.3
Nazareth, L.4
Wheeler, D.5
Song, X.6
Richmond, T.A.7
Middle, C.M.8
Rodesch, M.J.9
Packard, C.J.10
Weinstock, G.M.11
Gibbs, R.A.12
-
5
-
-
33847068077
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor
-
Allis, C.D., Jenuwein, T., and Reinberg, D. 2006. Epigenetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
-
(2006)
Epigenetics
-
-
Allis, C.D.1
Jenuwein, T.2
Reinberg, D.3
-
6
-
-
39149113544
-
Co-localization of CENP-C and CENP-H to discontinuous domains of CENP-A chromatin at human neocentromeres
-
Alonso, A., Fritz, B., Hasson, D., Abrusan, G., Cheung, F., Yoda, K., Radlwimmer, B., Ladurner, A.G., and Warburton, P.E. 2007. Co-localization of CENP-C and CENP-H to discontinuous domains of CENP-A chromatin at human neocentromeres. Genome Biol 8: R148.
-
(2007)
Genome Biol
, vol.8
, pp. R148
-
-
Alonso, A.1
Fritz, B.2
Hasson, D.3
Abrusan, G.4
Cheung, F.5
Yoda, K.6
Radlwimmer, B.7
Ladurner, A.G.8
Warburton, P.E.9
-
7
-
-
3042794631
-
Building the centromere: From foundation proteins to 3D organization
-
Amor, D.J., Kalitsis, P., Sumer, H., and Choo, K.H. 2004. Building the centromere: from foundation proteins to 3D organization. Trends Cell Biol 14: 359-368.
-
(2004)
Trends Cell Biol
, vol.14
, pp. 359-368
-
-
Amor, D.J.1
Kalitsis, P.2
Sumer, H.3
Choo, K.H.4
-
8
-
-
0037961635
-
The histone variant macroH2A interferes with transcription factor binding and SWI/SNF nucleosome remodeling
-
Angelov, D., Molla, A., Perche, P.Y., Hans, F., Cote, J., Khochbin, S., Bouvet, P., and Dimitrov, S. 2003. The histone variant macroH2A interferes with transcription factor binding and SWI/SNF nucleosome remodeling. Mol Cell 11: 1033-1041.
-
(2003)
Mol Cell
, vol.11
, pp. 1033-1041
-
-
Angelov, D.1
Molla, A.2
Perche, P.Y.3
Hans, F.4
Cote, J.5
Khochbin, S.6
Bouvet, P.7
Dimitrov, S.8
-
9
-
-
16844384065
-
Split decision: What happens to nucleosomes during DNA replication?
-
Annunziato, A.T. 2005. Split decision: What happens to nucleosomes during DNA replication? J Biol Chem 280: 12065-12068.
-
(2005)
J Biol Chem
, vol.280
, pp. 12065-12068
-
-
Annunziato, A.T.1
-
10
-
-
4444312848
-
Nucleosomes containing the histone variant H2A. Bbd organize only 118 base pairs of DNA
-
Bao, Y., Konesky, K., Park, Y.J., Rosu, S., Dyer, P.N., Rangasamy, D., Tremethick, D.J., Laybourn, P.J., and Luger, K. 2004. Nucleosomes containing the histone variant H2A. Bbd organize only 118 base pairs of DNA. Embo J 23: 3314-3324.
-
(2004)
Embo J
, vol.23
, pp. 3314-3324
-
-
Bao, Y.1
Konesky, K.2
Park, Y.J.3
Rosu, S.4
Dyer, P.N.5
Rangasamy, D.6
Tremethick, D.J.7
Laybourn, P.J.8
Luger, K.9
-
11
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski, A., Cuddapah, S., Cui, K., Roh, T.Y., Schones, D.E., Wang, Z., Wei, G., Chepelev, I., and Zhao, K. 2007. High-resolution profiling of histone methylations in the human genome. Cell 129: 823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
12
-
-
0041828954
-
FACT facilitates transcription-dependent nucleosome alteration
-
Belotserkovskaya, R., Oh, S., Bondarenko, V.A., Orphanides, G., Studitsky, V.M., and Reinberg, D. 2003. FACT facilitates transcription-dependent nucleosome alteration. Science 301: 1090- 1093.
-
(2003)
Science
, vol.301
, pp. 1090-1093
-
-
Belotserkovskaya, R.1
Oh, S.2
Bondarenko, V.A.3
Orphanides, G.4
Studitsky, V.M.5
Reinberg, D.6
-
13
-
-
12744263842
-
Computational identification of developmental enhancers: Conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura
-
Berman, B.P., Pfeiffer, B.D., Laverty, T.R., Salzberg, S.L., Rubin, G.M., Eisen, M.B., and Celniker, S.E. 2004. Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. Genome Biol 5: R61.
-
(2004)
Genome Biol
, vol.5
, pp. R61
-
-
Berman, B.P.1
Pfeiffer, B.D.2
Laverty, T.R.3
Salzberg, S.L.4
Rubin, G.M.5
Eisen, M.B.6
Celniker, S.E.7
-
14
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B.E., Mikkelsen, T.S., Xie, X., Kamal, M., Huebert, D.J., Cuff, J., Fry, B., Meissner, A., Wernig, M., Plath, K., Jaenisch, R., Wagschal, A., Feil, R., Schreiber, S.L., and Lander, E.S. 2006. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125: 315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
Jaenisch, R.11
Wagschal, A.12
Feil, R.13
Schreiber, S.L.14
Lander, E.S.15
-
15
-
-
0035116038
-
Sequence and analysis of the Arabidopsis genome
-
Bevan, M., Mayer, K., White, O., Eisen, J.A., Preuss, D., Bureau, T., Salzberg, S.L., and Mewes, H.-W. 2001. Sequence and analysis of the Arabidopsis genome. Current Opinions in Plant Biology 4: 105-110.
-
(2001)
Current Opinions in Plant Biology
, vol.4
, pp. 105-110
-
-
Bevan, M.1
Mayer, K.2
White, O.3
Eisen, J.A.4
Preuss, D.5
Bureau, T.6
Salzberg, S.L.7
Mewes, H.-W.8
-
16
-
-
0036830642
-
Role of histone H3 lysine 27 methylation in Polycomb-group silencing
-
Cao, R., Wang, L., Wang, H., Xia, L., Erdjument-Bromage, H., Tempst, P., Jones, R.S., and Zhang, Y. 2002. Role of histone H3 lysine 27 methylation in Polycomb-group silencing. Science 298: 1039-1043.
-
(2002)
Science
, vol.298
, pp. 1039-1043
-
-
Cao, R.1
Wang, L.2
Wang, H.3
Xia, L.4
Erdjument-Bromage, H.5
Tempst, P.6
Jones, R.S.7
Zhang, Y.8
-
17
-
-
33745020770
-
Determinants of histone H1 mobility and chromatin binding in living cells
-
Catez, F., Ueda, T., and Bustin, M. 2006. Determinants of histone H1 mobility and chromatin binding in living cells. Nat Struct Mol Biol 13: 305-310.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 305-310
-
-
Catez, F.1
Ueda, T.2
Bustin, M.3
-
19
-
-
0035931749
-
A novel chromatin protein, distantly related to histone H2A, is largely excluded from the inactive X chromosome
-
Chadwick, B.P. and Willard, H.F. 2001. A novel chromatin protein, distantly related to histone H2A, is largely excluded from the inactive X chromosome. J Cell Biol 152: 375-384.
-
(2001)
J Cell Biol
, vol.152
, pp. 375-384
-
-
Chadwick, B.P.1
Willard, H.F.2
-
20
-
-
10644221120
-
Multiple spatially distinct types of facultative heterochromatin on the human inactive X chromosome
-
Chadwick, B.P. and Willard, H.F. 2004. Multiple spatially distinct types of facultative heterochromatin on the human inactive X chromosome. Proc Natl Acad Sci USA 101: 17450-17455.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 17450-17455
-
-
Chadwick, B.P.1
Willard, H.F.2
-
21
-
-
36049013749
-
Structure, dynamics, and evolution of centromeric nucleosomes
-
Dalal, Y., Furuyama, T., Vermaak, D., and Henikoff, S. 2007a. Structure, dynamics, and evolution of centromeric nucleosomes. Proc Natl Acad Sci USA 104: 15974-15981.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 15974-15981
-
-
Dalal, Y.1
Furuyama, T.2
Vermaak, D.3
Henikoff, S.4
-
22
-
-
34548267126
-
Tetrameric structure of centromeric nucleosomes in Drosophila cells
-
Dalal, Y., Wang, H., Lindsay, S., and Henikoff, S. 2007b. Tetrameric structure of centromeric nucleosomes in Drosophila cells. PLoS Biol 5: e218.
-
(2007)
PLoS Biol
, vol.5
, pp. e218
-
-
Dalal, Y.1
Wang, H.2
Lindsay, S.3
Henikoff, S.4
-
23
-
-
0038611015
-
Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice
-
de Boer, E., Rodriguez, P., Bonte, E., Krijgsveld, J., Katsantoni, E., Heck, A., Grosveld, F., and Strouboulis, J. 2003. Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice. Proc Natl Acad Sci USA 100: 7480-7485.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7480-7485
-
-
De Boer, E.1
Rodriguez, P.2
Bonte, E.3
Krijgsveld, J.4
Katsantoni, E.5
Heck, A.6
Grosveld, F.7
Strouboulis, J.8
-
24
-
-
33947137710
-
Dynamics of replication-independent histone turnover in budding yeast
-
Dion, M., Kaplan, T., Friedman, N., and Rando, O.J. 2007. Dynamics of replication-independent histone turnover in budding yeast. Science 315: 1405-1408.
-
(2007)
Science
, vol.315
, pp. 1405-1408
-
-
Dion, M.1
Kaplan, T.2
Friedman, N.3
Rando, O.J.4
-
25
-
-
34250305146
-
ENCODE project consortium et al. 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
ENCODE project consortium et al. 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447: 799-816.
-
Nature
, vol.447
, pp. 799-816
-
-
-
26
-
-
33750477650
-
Structural basis for the histone chaperone activity of Asf1
-
English, C.M., Adkins, M.W., Carson, J.J., Churchill, M.E., and Tyler, J.K. 2006. Structural basis for the histone chaperone activity of Asf1. Cell 127: 495-508.
-
(2006)
Cell
, vol.127
, pp. 495-508
-
-
English, C.M.1
Adkins, M.W.2
Carson, J.J.3
Churchill, M.E.4
Tyler, J.K.5
-
27
-
-
35548985820
-
Centromere identity is specified by a single centromeric nucleosome in budding yeast
-
Furuyama, S. and Biggins, S. 2007. Centromere identity is specified by a single centromeric nucleosome in budding yeast. Proc Natl Acad Sci USA 104: 14706-14711.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 14706-14711
-
-
Furuyama, S.1
Biggins, S.2
-
28
-
-
33646589676
-
Chaperone-mediated assembly of centromeric chromatin in vitro
-
Furuyama, T., Dalal, Y., and Henikoff, S. 2006. Chaperone-mediated assembly of centromeric chromatin in vitro. Proc Natl Acad Sci U S A 103: 6172-6177.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 6172-6177
-
-
Furuyama, T.1
Dalal, Y.2
Henikoff, S.3
-
29
-
-
33846567551
-
Pericentric heterochromatin reprogramming by new histone variants during mouse spermiogenesis
-
Govin, J., Escoffier, E., Rousseaux, S., Kuhn, L., Ferro, M., Thevenon, J., Catena, R., Davidson, I., Garin, J., Khochbin, S., and Caron, C. 2007. Pericentric heterochromatin reprogramming by new histone variants during mouse spermiogenesis. J Cell Biol 176: 283-294.
-
(2007)
J Cell Biol
, vol.176
, pp. 283-294
-
-
Govin, J.1
Escoffier, E.2
Rousseaux, S.3
Kuhn, L.4
Ferro, M.5
Thevenon, J.6
Catena, R.7
Davidson, I.8
Garin, J.9
Khochbin, S.10
Caron, C.11
-
30
-
-
4544275776
-
Mis16 and Mis18 are required for CENP-A loading and histone deacetylation at centromeres
-
Hayashi, T., Fujita, Y., Iwasaki, O., Adachi, Y., Takahashi, K., and Yanagida, M. 2004. Mis16 and Mis18 are required for CENP-A loading and histone deacetylation at centromeres. Cell 118: 715-729.
-
(2004)
Cell
, vol.118
, pp. 715-729
-
-
Hayashi, T.1
Fujita, Y.2
Iwasaki, O.3
Adachi, Y.4
Takahashi, K.5
Yanagida, M.6
-
31
-
-
27144544622
-
Assembly of variant histones into chromatin
-
Henikoff, S. and Ahmad, K. 2005. Assembly of variant histones into chromatin. Ann Rev Cell Dev Biol 21: 133-153.
-
(2005)
Ann Rev Cell Dev Biol
, vol.21
, pp. 133-153
-
-
Henikoff, S.1
Ahmad, K.2
-
32
-
-
33644542460
-
Mislocalization of the Drosophila centromere-specific histone CID promotes formation of functional ectopic kinetochores
-
Heun, P., Erhardt, S., Blower, M.D., Weiss, S., Skora, A.D., and Karpen, G.H. 2006. Mislocalization of the Drosophila centromere-specific histone CID promotes formation of functional ectopic kinetochores. Dev Cell 10: 303-315.
-
(2006)
Dev Cell
, vol.10
, pp. 303-315
-
-
Heun, P.1
Erhardt, S.2
Blower, M.D.3
Weiss, S.4
Skora, A.D.5
Karpen, G.H.6
-
33
-
-
28844480448
-
Genomics in C. Elegans: So many genes, such a little worm
-
Hillier, L.W., Coulson, A., Murray, J.I., Bao, Z., Sulston, J.E., and Waterston, R.H. 2005. Genomics in C. elegans: so many genes, such a little worm. Genome Res 15: 1651-1660.
-
(2005)
Genome Res
, vol.15
, pp. 1651-1660
-
-
Hillier, L.W.1
Coulson, A.2
Murray, J.I.3
Bao, Z.4
Sulston, J.E.5
Waterston, R.H.6
-
34
-
-
36549021060
-
Genome-wide in situ exon capture for selective resequencing
-
Hodges, E., Xuan, Z., Balija, V., Kramer, M., Molla, M.N., Smith, S.W., Middle, C.M., Rodesch, M.J., Albert, T.J., Hannon, G.J., and McCombie, W.R. 2007. Genome-wide in situ exon capture for selective resequencing. Nat Genet 39: 1522-1527.
-
(2007)
Nat Genet
, vol.39
, pp. 1522-1527
-
-
Hodges, E.1
Xuan, Z.2
Balija, V.3
Kramer, M.4
Molla, M.N.5
Smith, S.W.6
Middle, C.M.7
Rodesch, M.J.8
Albert, T.J.9
Hannon, G.J.10
McCombie, W.R.11
-
35
-
-
33644844520
-
Microarray technology: Beyond transcript profiling and genotype analysis
-
Hoheisel, J.D. 2006. Microarray technology: beyond transcript profiling and genotype analysis. Nat Rev Genet 7: 200-210.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 200-210
-
-
Hoheisel, J.D.1
-
36
-
-
35548973892
-
DNA sequencing: Bench to bedside and beyond
-
Hutchison, C.A. 3rd. 2007. DNA sequencing: bench to bedside and beyond. Nucleic Acids Res 35: 6227-6237.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6227-6237
-
-
Hutchison, C.A.1
-
37
-
-
0035945567
-
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
-
Iyer, V.R., Horak, C.E., Scafe, C.S., Botstein, D., Snyder, M., and Brown, P.O. 2001. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 409: 533-538.
-
(2001)
Nature
, vol.409
, pp. 533-538
-
-
Iyer, V.R.1
Horak, C.E.2
Scafe, C.S.3
Botstein, D.4
Snyder, M.5
Brown, P.O.6
-
38
-
-
0023945277
-
Deposition of newly synthesized histones: Hybrid nucleosomes are not tandemly arranged on daughter DNA strands
-
Mosc
-
Jackson, V. 1988. Deposition of newly synthesized histones: hybrid nucleosomes are not tandemly arranged on daughter DNA strands. Biochemistry (Mosc) 27: 2109-2120.
-
(1988)
Biochemistry
, vol.27
, pp. 2109-2120
-
-
Jackson, V.1
-
39
-
-
33846663256
-
Continuous histone H2B and transcriptiondependent histone H3 exchange in yeast cells outside of replication
-
Jamai, A., Imoberdorf, R.M., and Strubin, M. 2007. Continuous histone H2B and transcriptiondependent histone H3 exchange in yeast cells outside of replication. Mol Cell 25: 345-355.
-
(2007)
Mol Cell
, vol.25
, pp. 345-355
-
-
Jamai, A.1
Imoberdorf, R.M.2
Strubin, M.3
-
40
-
-
34548806446
-
Assigning functions to genes-the main challenge of the post-genomics era
-
Janitz, M. 2007. Assigning functions to genes-the main challenge of the post-genomics era. Rev Physiol Biochem Pharmacol 159: 115-129.
-
(2007)
Rev Physiol Biochem Pharmacol
, vol.159
, pp. 115-129
-
-
Janitz, M.1
-
41
-
-
31444437043
-
Distribution of histone H3.3 in hematopoietic cell lineages
-
Jin, C. and Felsenfeld, G. 2006. Distribution of histone H3.3 in hematopoietic cell lineages. Proc Natl Acad Sci U S A 103: 574-579.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 574-579
-
-
Jin, C.1
Felsenfeld, G.2
-
42
-
-
34250745886
-
Nucleosome stability mediated by histone variants H3.3 and H2A.Z
-
Jin, C. and Felsenfeld, G. 2007. Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev 21: 1519-1529.
-
(2007)
Genes Dev
, vol.21
, pp. 1519-1529
-
-
Jin, C.1
Felsenfeld, G.2
-
43
-
-
29244457579
-
A blueprint for a human epigenome project: The AACR human epigenome workshop
-
Jones, P.A. and Martienssen, R. 2005. A blueprint for a Human Epigenome Project: The AACR Human Epigenome Workshop. Cancer Res 65: 11241-11246.
-
(2005)
Cancer Res
, vol.65
, pp. 11241-11246
-
-
Jones, P.A.1
Martienssen, R.2
-
44
-
-
34548272156
-
CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo
-
Konev, A.Y., Tribus, M., Park, S.Y., Podhraski, V., Lim, C.Y., Emelyanov, A.V., Vershilova, E., Pirrotta, V., Kadonaga, J.T., Lusser, A., and Fyodorov, D.V. 2007. CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo. Science 317: 1087-1090.
-
(2007)
Science
, vol.317
, pp. 1087-1090
-
-
Konev, A.Y.1
Tribus, M.2
Park, S.Y.3
Podhraski, V.4
Lim, C.Y.5
Emelyanov, A.V.6
Vershilova, E.7
Pirrotta, V.8
Kadonaga, J.T.9
Lusser, A.10
Fyodorov, D.V.11
-
45
-
-
22144437998
-
Splicing regulates NAD metabolite binding to histone macroH2A
-
Kustatscher, G., Hothorn, M., Pugieux, C., Scheffzek, K., and Ladurner, A.G. 2005. Splicing regulates NAD metabolite binding to histone macroH2A. Nat Struct Mol Biol 12: 624-625.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 624-625
-
-
Kustatscher, G.1
Hothorn, M.2
Pugieux, C.3
Scheffzek, K.4
Ladurner, A.G.5
-
46
-
-
1542298307
-
Histone chaperones, a supporting role in the limelight
-
Loyola, A. and Almouzni, G. 2004. Histone chaperones, a supporting role in the limelight. Biochim Biophys Acta 1677: 3-11.
-
(2004)
Biochim Biophys Acta
, vol.1677
, pp. 3-11
-
-
Loyola, A.1
Almouzni, G.2
-
47
-
-
0242407193
-
Phylogenomics of the nucleosome
-
Malik, H.S. and Henikoff, S. 2003. Phylogenomics of the nucleosome. Nat Struct Biol 10: 882-891.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 882-891
-
-
Malik, H.S.1
Henikoff, S.2
-
48
-
-
0037423930
-
Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent chromatin
-
Meneghini, M.D., Wu, M., and Madhani, H.D. 2003. Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent chromatin. Cell 112: 725-736.
-
(2003)
Cell
, vol.112
, pp. 725-736
-
-
Meneghini, M.D.1
Wu, M.2
Madhani, H.D.3
-
49
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen, T.S., Ku, M., Jaffe, D.B., Issac, B., Lieberman, E., Giannoukos, G., Alvarez, P., Brockman, W., Kim, T.K., Koche, R.P., Lee, W., Mendenhall, E., O'Donovan, A., Presser, A., Russ, C., Xie, X., Meissner, A., Wernig, M., Jaenisch, R., Nusbaum, C., Lander, E.S., and Bernstein, B.E. 2007. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448: 553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
-
50
-
-
27144510368
-
Genome-scale profiling of histone H3.3 replacement patterns
-
Mito, Y., Henikoff, J., and Henikoff, S. 2005. Genome-scale profiling of histone H3.3 replacement patterns. Nat Genet 37: 1090-1097.
-
(2005)
Nat Genet
, vol.37
, pp. 1090-1097
-
-
Mito, Y.1
Henikoff, J.2
Henikoff, S.3
-
51
-
-
33947098453
-
Histone replacement marks the boundaries of cisregulatory domains
-
Mito, Y., Henikoff, J., and Henikoff, S. 2007. Histone replacement marks the boundaries of cisregulatory domains. Science 315: 1408-1411.
-
(2007)
Science
, vol.315
, pp. 1408-1411
-
-
Mito, Y.1
Henikoff, J.2
Henikoff, S.3
-
52
-
-
0348184963
-
ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
-
Mizuguchi, G., Shen, X., Landry, J., Wu, W.H., Sen, S., and Wu, C. 2004. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303: 343-348.
-
(2004)
Science
, vol.303
, pp. 343-348
-
-
Mizuguchi, G.1
Shen, X.2
Landry, J.3
Wu, W.H.4
Sen, S.5
Wu, C.6
-
53
-
-
33845672697
-
Proteolysis restricts localization of CID, the centromere-specific histone H3 variant of Drosophila, to centromeres
-
Moreno-Moreno, O., Torras-Llort, M., and Azorin, F. 2006. Proteolysis restricts localization of CID, the centromere-specific histone H3 variant of Drosophila, to centromeres. Nucleic Acids Res 34: 6247-6255.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 6247-6255
-
-
Moreno-Moreno, O.1
Torras-Llort, M.2
Azorin, F.3
-
54
-
-
0842289255
-
Sequencing of a rice centromere uncovers active genes
-
Nagaki, K., Cheng, Z., Ouyang, S., Talbert, P.B., Kim, M., Jones, K.M., Henikoff, S., Buell, C.R., and Jiang, J. 2004. Sequencing of a rice centromere uncovers active genes. Nat Genet 36: 138-145.
-
(2004)
Nat Genet
, vol.36
, pp. 138-145
-
-
Nagaki, K.1
Cheng, Z.2
Ouyang, S.3
Talbert, P.B.4
Kim, M.5
Jones, K.M.6
Henikoff, S.7
Buell, C.R.8
Jiang, J.9
-
55
-
-
33847226680
-
Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4
-
Natsume, R., Eitoku, M., Akai, Y., Sano, N., Horikoshi, M., and Senda, T. 2007. Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4. Nature 446: 338-341.
-
(2007)
Nature
, vol.446
, pp. 338-341
-
-
Natsume, R.1
Eitoku, M.2
Akai, Y.3
Sano, N.4
Horikoshi, M.5
Senda, T.6
-
56
-
-
37749051130
-
Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription
-
Ng, R.K. and Gurdon, J.B. 2008. Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription. Nat Cell Biol 10: 102-109.
-
(2008)
Nat Cell Biol
, vol.10
, pp. 102-109
-
-
Ng, R.K.1
Gurdon, J.B.2
-
57
-
-
35748959649
-
Microarray-based genomic selection for high-throughput resequencing
-
Okou, D.T., Steinberg, K.M., Middle, C., Cutler, D.J., Albert, T.J., and Zwick, M.E. 2007. Microarray-based genomic selection for high-throughput resequencing. Nat Methods 4: 907-909.
-
(2007)
Nat Methods
, vol.4
, pp. 907-909
-
-
Okou, D.T.1
Steinberg, K.M.2
Middle, C.3
Cutler, D.J.4
Albert, T.J.5
Zwick, M.E.6
-
58
-
-
27944478598
-
Assembly and disassembly of nucleosome core particles containing histone variants by human nucleosome assembly protein I
-
Okuwaki, M., Kato, K., Shimahara, H., Tate, S., and Nagata, K. 2005. Assembly and disassembly of nucleosome core particles containing histone variants by human nucleosome assembly protein I. Mol Cell Biol 25: 10639-10651.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 10639-10651
-
-
Okuwaki, M.1
Kato, K.2
Shimahara, H.3
Tate, S.4
Nagata, K.5
-
59
-
-
12544258222
-
Nucleosome assembly protein 1 exchanges histone H2A-H2B dimers and assists nucleosome sliding
-
Park, Y.J., Chodaparambil, J.V., Bao, Y., McBryant, S.J., and Luger, K. 2005. Nucleosome assembly protein 1 exchanges histone H2A-H2B dimers and assists nucleosome sliding. J Biol Chem 280: 1817-1825.
-
(2005)
J Biol Chem
, vol.280
, pp. 1817-1825
-
-
Park, Y.J.1
Chodaparambil, J.V.2
Bao, Y.3
McBryant, S.J.4
Luger, K.5
-
60
-
-
2642515598
-
A new fluorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome
-
Park, Y.J., Dyer, P.N., Tremethick, D.J., and Luger, K. 2004. A new fluorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome. J Biol Chem 279: 24274-24282.
-
(2004)
J Biol Chem
, vol.279
, pp. 24274-24282
-
-
Park, Y.J.1
Dyer, P.N.2
Tremethick, D.J.3
Luger, K.4
-
61
-
-
0028791330
-
Mechanism of protein access to specific DNA sequences in chromatin: A dynamic equilibrium model for gene regulation
-
Polach, K.J. and Widom, J. 1995. Mechanism of protein access to specific DNA sequences in chromatin: A dynamic equilibrium model for gene regulation. J Mol Biol 254: 130-149.
-
(1995)
J Mol Biol
, vol.254
, pp. 130-149
-
-
Polach, K.J.1
Widom, J.2
-
62
-
-
33750449326
-
New histone incorporation marks sites of UV repair in human cells
-
Polo, S.E., Roche, D., and Almouzni, G. 2006. New histone incorporation marks sites of UV repair in human cells. Cell 127: 481-493.
-
(2006)
Cell
, vol.127
, pp. 481-493
-
-
Polo, S.E.1
Roche, D.2
Almouzni, G.3
-
63
-
-
26844511498
-
Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin
-
Raisner, R.M., Hartley, P.D., Meneghini, M.D., Bao, M.Z., Liu, C.L., Schreiber, S.L., Rando, O.J., and Madhani, H.D. 2005. Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin. Cell 123: 233-248.
-
(2005)
Cell
, vol.123
, pp. 233-248
-
-
Raisner, R.M.1
Hartley, P.D.2
Meneghini, M.D.3
Bao, M.Z.4
Liu, C.L.5
Schreiber, S.L.6
Rando, O.J.7
Madhani, H.D.8
-
64
-
-
0034704248
-
Genomewide location and function of DNA binding proteins
-
Ren, B., Robert, F., Wyrick, J.J., Aparicio, O., Jennings, E.G., Simon, I., Zeitlinger, J., Schreiber, J., Hannett, N., Kanin, E., Volkert, T.L., Wilson, C.J., Bell, S.P., and Young, R.A. 2000. Genomewide location and function of DNA binding proteins. Science 290: 2306-2309.
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
Simon, I.6
Zeitlinger, J.7
Schreiber, J.8
Hannett, N.9
Kanin, E.10
Volkert, T.L.11
Wilson, C.J.12
Bell, S.P.13
Young, R.A.14
-
65
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
Robertson, G., Hirst, M., Bainbridge, M., Bilenky, M., Zhao, Y., Zeng, T., Euskirchen, G., Bernier, B., Varhol, R., Delaney, A., Thiessen, N., Griffith, O.L., He, A., Marra, M., Snyder, M., and Jones, S. 2007. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat Methods 4: 651-657.
-
(2007)
Nat Methods
, vol.4
, pp. 651-657
-
-
Robertson, G.1
Hirst, M.2
Bainbridge, M.3
Bilenky, M.4
Zhao, Y.5
Zeng, T.6
Euskirchen, G.7
Bernier, B.8
Varhol, R.9
Delaney, A.10
Thiessen, N.11
Griffith, O.L.12
He, A.13
Marra, M.14
Snyder, M.15
Jones, S.16
-
66
-
-
0032489520
-
DNA doublestranded breaks induce histone H2AX phosphorylation on serine 139
-
Rogakou, E.P., Pilch, D.R., Orr, A.H., Ivanova, V.S., and Bonner, W.M. 1998. DNA doublestranded breaks induce histone H2AX phosphorylation on serine 139. J Biol Chem 273: 5858- 5868.
-
(1998)
J Biol Chem
, vol.273
, pp. 5858-5868
-
-
Rogakou, E.P.1
Pilch, D.R.2
Orr, A.H.3
Ivanova, V.S.4
Bonner, W.M.5
-
67
-
-
3543008920
-
High-resolution genome-wide mapping of histone modifications
-
Roh, T.Y., Ngau, W.C., Cui, K., Landsman, D., and Zhao, K. 2004. High-resolution genome-wide mapping of histone modifications. Nat Biotechnol 22: 1013-1016.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1013-1016
-
-
Roh, T.Y.1
Ngau, W.C.2
Cui, K.3
Landsman, D.4
Zhao, K.5
-
68
-
-
34547277498
-
Genome-wide replicationindependent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1
-
Rufiange, A., Jacques, P.E., Bhat, W., Robert, F., and Nourani, A. 2007. Genome-wide replicationindependent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1. Mol Cell 27: 393-405.
-
(2007)
Mol Cell
, vol.27
, pp. 393-405
-
-
Rufiange, A.1
Jacques, P.E.2
Bhat, W.3
Robert, F.4
Nourani, A.5
-
69
-
-
0141888374
-
Transcription within a functional human centromere
-
Saffery, R., Sumer, H., Hassan, S., Wong, L.H., Craig, J.M., Todokoro, K., Ansderson, M., Stafford, A., and Andy Choo, K.H. 2003. Transcription within a functional human centromere. Mol Cell 12: 509-516.
-
(2003)
Mol Cell
, vol.12
, pp. 509-516
-
-
Saffery, R.1
Sumer, H.2
Hassan, S.3
Wong, L.H.4
Craig, J.M.5
Todokoro, K.6
Ansderson, M.7
Stafford, A.8
Andy Choo, K.H.9
-
70
-
-
0034721645
-
Histone H2A.Z regulates transcription and is partially redundant with nucleosome remodeling complexes
-
Santisteban, M.S., Kalashnikova, T., and Smith, M.M. 2000. Histone H2A.Z regulates transcription and is partially redundant with nucleosome remodeling complexes. Cell 103: 411-422.
-
(2000)
Cell
, vol.103
, pp. 411-422
-
-
Santisteban, M.S.1
Kalashnikova, T.2
Smith, M.M.3
-
71
-
-
33745225872
-
Genome-wide analysis of Polycomb targets in Drosophila melanogaster
-
Schwartz, Y.B., Kahn, T.G., Nix, D.A., Li, X.Y., Bourgon, R., Biggin, M., and Pirrotta, V. 2006. Genome-wide analysis of Polycomb targets in Drosophila melanogaster. Nat Genet 38: 700-705.
-
(2006)
Nat Genet
, vol.38
, pp. 700-705
-
-
Schwartz, Y.B.1
Kahn, T.G.2
Nix, D.A.3
Li, X.Y.4
Bourgon, R.5
Biggin, M.6
Pirrotta, V.7
-
72
-
-
0024372060
-
Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro
-
Smith, S. and Stillman, B. 1989. Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. Cell 58: 15-25.
-
(1989)
Cell
, vol.58
, pp. 15-25
-
-
Smith, S.1
Stillman, B.2
-
73
-
-
36148991452
-
Phosphorylated serine 28 of histone H3 is associated with destabilized nucleosomes in transcribed chromatin
-
Sun, J.M., Chen, H.Y., Espino, P.S., and Davie, J.R. 2007. Phosphorylated serine 28 of histone H3 is associated with destabilized nucleosomes in transcribed chromatin. Nucleic Acids Res 35: 6640-6647.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6640-6647
-
-
Sun, J.M.1
Chen, H.Y.2
Espino, P.S.3
Davie, J.R.4
-
74
-
-
0742304304
-
Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis
-
Tagami, H., Ray-Gallet, D., Almouzni, G., and Nakatani, Y. 2004. Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. Cell 116: 51-61.
-
(2004)
Cell
, vol.116
, pp. 51-61
-
-
Tagami, H.1
Ray-Gallet, D.2
Almouzni, G.3
Nakatani, Y.4
-
75
-
-
15444376394
-
Replication-independent core histone dynamics at transcriptionally active loci in vivo
-
Thiriet, C. and Hayes, J.J. 2005. Replication-independent core histone dynamics at transcriptionally active loci in vivo. Genes Dev 19: 677-682.
-
(2005)
Genes Dev
, vol.19
, pp. 677-682
-
-
Thiriet, C.1
Hayes, J.J.2
-
76
-
-
0034049167
-
Unusual core histones specifically expressed in male gametic cells of Lilium longiflorum
-
Ueda, K., Kinoshita, Y., Xu, Z.J., Ide, N., Ono, M., Akahori, Y., Tanaka, I., and Inoue, M. 2000. Unusual core histones specifically expressed in male gametic cells of Lilium longiflorum. Chromosoma 108: 491-500.
-
(2000)
Chromosoma
, vol.108
, pp. 491-500
-
-
Ueda, K.1
Kinoshita, Y.2
Xu, Z.J.3
Ide, N.4
Ono, M.5
Akahori, Y.6
Tanaka, I.7
Inoue, M.8
-
77
-
-
20044384522
-
Mapping of genetic and epigenetic regulatory networks using microarrays
-
van Steensel, B. 2005. Mapping of genetic and epigenetic regulatory networks using microarrays. Nat Genet 37 Suppl: S18-S24.
-
(2005)
Nat Genet
, vol.37
, pp. S18-S24
-
-
Van Steensel, B.1
-
78
-
-
0035093828
-
Chromatin profiling using targeted DNA adenine methyltransferase
-
van Steensel, B., Delrow, J., and Henikoff, S. 2001. Chromatin profiling using targeted DNA adenine methyltransferase. Nat Genet 27: 304-308.
-
(2001)
Nat Genet
, vol.27
, pp. 304-308
-
-
Van Steensel, B.1
Delrow, J.2
Henikoff, S.3
-
79
-
-
0035962662
-
ATP-dependent chromatin remodeling factors: Nucleosome shufflers with many missions
-
Varga-Weisz, P.D. 2001. ATP-dependent chromatin remodeling factors: nucleosome shufflers with many missions. Oncogene 20: 3076-3085.
-
(2001)
Oncogene
, vol.20
, pp. 3076-3085
-
-
Varga-Weisz, P.D.1
-
80
-
-
0028789793
-
Serial analysis of gene expression
-
Velculescu, V.E., Zhang, L., Vogelstein, B., and Kinzler, K.W. 1995. Serial analysis of gene expression. Science 270: 484-487.
-
(1995)
Science
, vol.270
, pp. 484-487
-
-
Velculescu, V.E.1
Zhang, L.2
Vogelstein, B.3
Kinzler, K.W.4
-
81
-
-
14044257457
-
Chromosomal dynamics of human neocentromere formation
-
Warburton, P.E. 2004. Chromosomal dynamics of human neocentromere formation. Chromosome Res 12: 617-626.
-
(2004)
Chromosome Res
, vol.12
, pp. 617-626
-
-
Warburton, P.E.1
-
83
-
-
0036730532
-
A user's guide to the human genome
-
Wolfsberg, T.G., Wetterstrand, K.A., Guyer, M.S., Collins, F.S., and Baxevanis, A.D. 2002. A user's guide to the human genome. Nat Genet 32 Suppl: 1-79.
-
(2002)
Nat Genet
, vol.32
, pp. 1-79
-
-
Wolfsberg, T.G.1
Wetterstrand, K.A.2
Guyer, M.S.3
Collins, F.S.4
Baxevanis, A.D.5
-
84
-
-
33644823241
-
Transcription and histone modifications in the recombination-free region spanning a rice centromere
-
Yan, H., Jin, W., Nagaki, K., Tian, S., Ouyang, S., Buell, C.R., Talbert, P.B., Henikoff, S., and Jiang, J. 2005. Transcription and histone modifications in the recombination-free region spanning a rice centromere. Plant Cell 17: 3227-3238.
-
(2005)
Plant Cell
, vol.17
, pp. 3227-3238
-
-
Yan, H.1
Jin, W.2
Nagaki, K.3
Tian, S.4
Ouyang, S.5
Buell, C.R.6
Talbert, P.B.7
Henikoff, S.8
Jiang, J.9
-
85
-
-
26844489856
-
Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
-
Zhang, H., Roberts, D.N., and Cairns, B.R. 2005. Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss. Cell 123: 219-231.
-
(2005)
Cell
, vol.123
, pp. 219-231
-
-
Zhang, H.1
Roberts, D.N.2
Cairns, B.R.3
|