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Volumn 19, Issue 6, 2005, Pages 677-682

Replication-independent core histone dynamics at transcriptionally active loci in vivo

Author keywords

Chromatin; Chromatin assembly; Histone exchange; Histones

Indexed keywords

ALPHA AMANITIN; HISTONE; HISTONE H3; HISTONE H4; RIBOSOME RNA; TETRAMER;

EID: 15444376394     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.1265205     Document Type: Article
Times cited : (118)

References (44)
  • 1
    • 0036299092 scopus 로고    scopus 로고
    • The histone variant H3.3 marks active chromatin by replication- independent nucleosome assembly
    • Ahmad, K. and Henikoff, S. 2002. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol. Cell 9: 1191-1200.
    • (2002) Mol. Cell , vol.9 , pp. 1191-1200
    • Ahmad, K.1    Henikoff, S.2
  • 2
    • 0020660260 scopus 로고
    • Eukaryotic RNA polymerase II binds to nucleosome cores from transcribed genes
    • Baer, B.W. and Rhodes, D. 1983. Eukaryotic RNA polymerase II binds to nucleosome cores from transcribed genes. Nature 301: 482-488.
    • (1983) Nature , vol.301 , pp. 482-488
    • Baer, B.W.1    Rhodes, D.2
  • 4
    • 0029070940 scopus 로고
    • Site-specific initiation of DNA replication within the non-transcribed spacer of Physarum rDNA
    • Benard, M., Lagnel, C., and Pierron, G. 1995. Site-specific initiation of DNA replication within the non-transcribed spacer of Physarum rDNA. Nucleic Acids Res. 23: 1447-1453.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 1447-1453
    • Benard, M.1    Lagnel, C.2    Pierron, G.3
  • 5
    • 0038094501 scopus 로고    scopus 로고
    • Nucleosomes unfold completely at a transcriptionally active promoter
    • Boeger, H., Griesenbeck, J., Strattan, J.S., and Kornberg, R.D. 2003. Nucleosomes unfold completely at a transcriptionally active promoter. Mol. Cell 11: 1587-1598.
    • (2003) Mol. Cell , vol.11 , pp. 1587-1598
    • Boeger, H.1    Griesenbeck, J.2    Strattan, J.S.3    Kornberg, R.D.4
  • 6
    • 0016337102 scopus 로고
    • Molecular basis of control of mitotic cell division in eukaryotes
    • Bradbury, E.M., Inglis, R.J., Matthews, H.R., and Langan, T.A. 1974. Molecular basis of control of mitotic cell division in eukaryotes. Nature 249: 553-556.
    • (1974) Nature , vol.249 , pp. 553-556
    • Bradbury, E.M.1    Inglis, R.J.2    Matthews, H.R.3    Langan, T.A.4
  • 7
    • 0347539781 scopus 로고    scopus 로고
    • Histone H2A/H2B dimer exchange by ATP-dependent chromatin remodeling activities
    • Bruno, M., Flaus, A., Stockdale, C., Rencurel, C., Ferreira, H., and Owen-Hughes, T. 2003. Histone H2A/H2B dimer exchange by ATP-dependent chromatin remodeling activities. Mol. Cell 12: 1599-1606.
    • (2003) Mol. Cell , vol.12 , pp. 1599-1606
    • Bruno, M.1    Flaus, A.2    Stockdale, C.3    Rencurel, C.4    Ferreira, H.5    Owen-Hughes, T.6
  • 8
    • 0037022279 scopus 로고    scopus 로고
    • Structural basis of transcription: α-amanitin-RNA polymerase II cocrystal at 2.8 a resolution
    • Bushnell, D.A., Cramer, P., and Kornberg, R.D. 2002. Structural basis of transcription: α-amanitin-RNA polymerase II cocrystal at 2.8 A resolution. Proc. Natl. Acad. Sci. 99: 1218-1222.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 1218-1222
    • Bushnell, D.A.1    Cramer, P.2    Kornberg, R.D.3
  • 9
    • 0022455529 scopus 로고
    • Transcription of α-tubulin and histone H4 genes begins at the same point in the Physarum cell cycle
    • Carrino, J.J. and Laffler, T.G. 1986. Transcription of α-tubulin and histone H4 genes begins at the same point in the Physarum cell cycle. J. Cell Biol. 102: 1666-1670.
    • (1986) J. Cell Biol. , vol.102 , pp. 1666-1670
    • Carrino, J.J.1    Laffler, T.G.2
  • 10
    • 0036671407 scopus 로고    scopus 로고
    • Ordered recruitment: Gene-specific mechanism of transcription activation
    • Cosma, M.P. 2002. Ordered recruitment: Gene-specific mechanism of transcription activation. Mol. Cell 10: 227-236.
    • (2002) Mol. Cell , vol.10 , pp. 227-236
    • Cosma, M.P.1
  • 11
    • 0033064319 scopus 로고    scopus 로고
    • Mapping DNA interaction sites of chromosomal proteins using immunoprecipitation and polymerase chain reaction
    • Hecht, A. and Grunstein, M. 1999. Mapping DNA interaction sites of chromosomal proteins using immunoprecipitation and polymerase chain reaction. Methods Enzymol. 304: 399-414.
    • (1999) Methods Enzymol. , vol.304 , pp. 399-414
    • Hecht, A.1    Grunstein, M.2
  • 12
    • 0025089206 scopus 로고
    • Nucleosomal histones of transcriptionally active/competent chromatin preferentially exchange with newly synthesized histones in quiescent chicken erythrocytes
    • Hendzel, M.J. and Davie, J.R. 1990. Nucleosomal histones of transcriptionally active/competent chromatin preferentially exchange with newly synthesized histones in quiescent chicken erythrocytes. Biochem. J. 271: 67-73.
    • (1990) Biochem. J. , vol.271 , pp. 67-73
    • Hendzel, M.J.1    Davie, J.R.2
  • 13
    • 0022393483 scopus 로고
    • Histone synthesis and deposition in the G1 and S phases of hepatoma tissue culture cells
    • Jackson, V. and Chalkley, R. 1985. Histone synthesis and deposition in the G1 and S phases of hepatoma tissue culture cells. Biochemistry 24: 6921-6930.
    • (1985) Biochemistry , vol.24 , pp. 6921-6930
    • Jackson, V.1    Chalkley, R.2
  • 14
    • 0019401409 scopus 로고
    • DNase I hypersensitive sites in Drosophila chromatin occur at the 5′ ends of regions of transcription
    • Keene, M.A., Corces, V., Lowenhaupt, K., and Elgin, S.C. 1981. DNase I hypersensitive sites in Drosophila chromatin occur at the 5′ ends of regions of transcription. Proc. Natl. Acad. Sci. 78: 143-146.
    • (1981) Proc. Natl. Acad. Sci. , vol.78 , pp. 143-146
    • Keene, M.A.1    Corces, V.2    Lowenhaupt, K.3    Elgin, S.C.4
  • 15
    • 0035954427 scopus 로고    scopus 로고
    • Kinetics of core histones in living human cells: Little exchange of H3 and H4 and some rapid exchange of H2B
    • Kimura, H. and Cook, P.R. 2001. Kinetics of core histones in living human cells: Little exchange of H3 and H4 and some rapid exchange of H2B. J. Cell. Biol. 153: 1341-1353.
    • (2001) J. Cell. Biol. , vol.153 , pp. 1341-1353
    • Kimura, H.1    Cook, P.R.2
  • 16
    • 0036203807 scopus 로고    scopus 로고
    • Nucleosome remodeling induced by RNA polymerase II: Loss of the H2A/H2B dimer during transcription
    • Kireeva, M.L., Walter, W., Tchernajenko, V., Bondarenko, V., Kashlev, M., and Studitsky, V.M. 2002. Nucleosome remodeling induced by RNA polymerase II: Loss of the H2A/H2B dimer during transcription, Mol. Cell 9: 541-552.
    • (2002) Mol. Cell , vol.9 , pp. 541-552
    • Kireeva, M.L.1    Walter, W.2    Tchernajenko, V.3    Bondarenko, V.4    Kashlev, M.5    Studitsky, V.M.6
  • 17
    • 3543023310 scopus 로고    scopus 로고
    • Evidence for nucleosome depletion at active regulatory regions genome-wide
    • Lee, C.K., Shibata, Y., Rao, B., Strahl, B.D., and Lieb J.D. 2004. Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat. Genet. 36: 900-905.
    • (2004) Nat. Genet. , vol.36 , pp. 900-905
    • Lee, C.K.1    Shibata, Y.2    Rao, B.3    Strahl, B.D.4    Lieb, J.D.5
  • 18
    • 0023664692 scopus 로고
    • Histone synthesis during the cell cycle of Physarum polycephalum. Synthesis of different histone species is not under a common regulatory control
    • Loidl, P. and Grobner, P. 1987. Histone synthesis during the cell cycle of Physarum polycephalum. Synthesis of different histone species is not under a common regulatory control. J. Biol. Chem. 262: 10195-10199.
    • (1987) J. Biol. Chem. , vol.262 , pp. 10195-10199
    • Loidl, P.1    Grobner, P.2
  • 19
    • 0344198456 scopus 로고    scopus 로고
    • Chromatin remodeling by ATP-dependent molecular machines
    • Lusser, A. and Kadonaga, J.T. 2003. Chromatin remodeling by ATP-dependent molecular machines. BioEssays 25: 1192-1200.
    • (2003) BioEssays , vol.25 , pp. 1192-1200
    • Lusser, A.1    Kadonaga, J.T.2
  • 20
    • 0242407193 scopus 로고    scopus 로고
    • Phylogenomics of the nucleosome
    • Malik, H.S. and Henikoff, S 2003. Phylogenomics of the nucleosome. Nat. Struct. Biol. 10: 882-891.
    • (2003) Nat. Struct. Biol. , vol.10 , pp. 882-891
    • Malik, H.S.1    Henikoff, S.2
  • 21
    • 0038449280 scopus 로고    scopus 로고
    • Developmentally regulated usage of Physazum DNA replication origins
    • Maric, C., Benard, M., and Pierron, G. 2003. Developmentally regulated usage of Physazum DNA replication origins. EMBO Rep. 4: 474-478.
    • (2003) EMBO Rep. , vol.4 , pp. 474-478
    • Maric, C.1    Benard, M.2    Pierron, G.3
  • 22
    • 1242342240 scopus 로고    scopus 로고
    • Histone H3.3 is enriched in covalent modifications associated with active chromatin
    • McKittrick, E., Gafken, P.R., Ahmad, K., and Henikoff, S. 2004. Histone H3.3 is enriched in covalent modifications associated with active chromatin. Proc. Natl. Acad. Sci. 101: 1525-1530.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 1525-1530
    • McKittrick, E.1    Gafken, P.R.2    Ahmad, K.3    Henikoff, S.4
  • 23
    • 0035313802 scopus 로고    scopus 로고
    • The ins and outs of nucleosome assembly
    • Mello, J.A. and Almouzni, G. 2001. The ins and outs of nucleosome assembly. Curr. Opin. Genet. Dev. 11: 136-141.
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 136-141
    • Mello, J.A.1    Almouzni, G.2
  • 24
    • 0037154963 scopus 로고    scopus 로고
    • Cooperation between complexes that regulate chromatin structure and transcription
    • Narlikar, G.J., Fan, H.Y., and Kingston, R.E. 2002. Cooperation between complexes that regulate chromatin structure and transcription. Cell 108: 475-487.
    • (2002) Cell , vol.108 , pp. 475-487
    • Narlikar, G.J.1    Fan, H.Y.2    Kingston, R.E.3
  • 25
    • 0024280814 scopus 로고
    • A method for isolation of nuclei containing undegraded RNA from RNase-rich plasmodia of Physarum polycephalum
    • Nothacker, K.D. and Hildebrandt, A. 1988. A method for isolation of nuclei containing undegraded RNA from RNase-rich plasmodia of Physarum polycephalum. Biochim. Biophys. Acta 950: 403-410.
    • (1988) Biochim. Biophys. Acta , vol.950 , pp. 403-410
    • Nothacker, K.D.1    Hildebrandt, A.2
  • 26
    • 0033566129 scopus 로고    scopus 로고
    • The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins
    • Orphanides, G., Wu, W.H., Lane, W.S., Hampsey, M., and Reinberg, D. 1999. The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins. Nature 400: 284-288.
    • (1999) Nature , vol.400 , pp. 284-288
    • Orphanides, G.1    Wu, W.H.2    Lane, W.S.3    Hampsey, M.4    Reinberg, D.5
  • 27
    • 0021947243 scopus 로고
    • Genomic organization and nucleotide sequence of two distinct histone gene clusters from Xenopus laevis. Identification of novel conserved upstream sequence elements
    • Perry, M., Thomsen, G.H., and Roeder, R.G. 1985. Genomic organization and nucleotide sequence of two distinct histone gene clusters from Xenopus laevis. Identification of novel conserved upstream sequence elements. J. Mol. Biol. 185: 479-499.
    • (1985) J. Mol. Biol. , vol.185 , pp. 479-499
    • Perry, M.1    Thomsen, G.H.2    Roeder, R.G.3
  • 28
    • 0027743318 scopus 로고
    • Analysis of nucleosome assembly and histone exchange using antibodies specific for acetylated H4
    • Perry, C.A., Dadd, C.A., Allis, C.D., and Annunziato, A.T. 1993. Analysis of nucleosome assembly and histone exchange using antibodies specific for acetylated H4. Biochemistry 32: 13605-13614.
    • (1993) Biochemistry , vol.32 , pp. 13605-13614
    • Perry, C.A.1    Dadd, C.A.2    Allis, C.D.3    Annunziato, A.T.4
  • 29
    • 0018908916 scopus 로고
    • More evidence for replication-transcription-coupling in Physarum polycephalum
    • Pierron, G. and Sauer, H.W. 1980. More evidence for replication- transcription-coupling in Physarum polycephalum. J. Cell. Sci. 41: 105-113.
    • (1980) J. Cell. Sci. , vol.41 , pp. 105-113
    • Pierron, G.1    Sauer, H.W.2
  • 30
    • 0018891793 scopus 로고
    • Incorporation of exogenous pyrene-labeled histone into Priysarum chromatin: A system for studying changes in nucleosomes assembled in vivo
    • Prior, C.P., Cantor, C.R., Johnson, E.M., and Allfrey, V.G. 1980. Incorporation of exogenous pyrene-labeled histone into Priysarum chromatin: A system for studying changes in nucleosomes assembled in vivo. Cell 20: 597-608.
    • (1980) Cell , vol.20 , pp. 597-608
    • Prior, C.P.1    Cantor, C.R.2    Johnson, E.M.3    Allfrey, V.G.4
  • 31
    • 0038094502 scopus 로고    scopus 로고
    • Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter
    • Reinke, H. and Horz, W. 2003. Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. Mol. Cell 11: 1599-1607.
    • (2003) Mol. Cell , vol.11 , pp. 1599-1607
    • Reinke, H.1    Horz, W.2
  • 33
    • 0033522911 scopus 로고    scopus 로고
    • RNA polymerase-specific nucleosome disruption by transcription in vivo
    • Sathyanarayana, U.G., Freeman, L.A., Lee, M.S., and Ganard, W.T. 1999. RNA polymerase-specific nucleosome disruption by transcription in vivo. J. Biol. Chem. 274: 16431-16436.
    • (1999) J. Biol. Chem. , vol.274 , pp. 16431-16436
    • Sathyanarayana, U.G.1    Freeman, L.A.2    Lee, M.S.3    Ganard, W.T.4
  • 34
    • 0042830962 scopus 로고    scopus 로고
    • Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo
    • Saunders, A., Werner, J., Andrulis, A.D., Nakayama, T., Hirose, S., Reinberg, D., and Lis, J.T. 2003. Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science 301: 1094-1096.
    • (2003) Science , vol.301 , pp. 1094-1096
    • Saunders, A.1    Werner, J.2    Andrulis, A.D.3    Nakayama, T.4    Hirose, S.5    Reinberg, D.6    Lis, J.T.7
  • 35
    • 8644287437 scopus 로고    scopus 로고
    • Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II
    • Schwabish, M.A. and Struhl, K. 2004. Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II. Mol. Cell. Biol. 24: 10111-10117.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 10111-10117
    • Schwabish, M.A.1    Struhl, K.2
  • 36
    • 1642346956 scopus 로고    scopus 로고
    • Analysis of chromatin assembled in vivo using exogenous histones in Physarum polycephalum
    • Thiriet, C. 2004. Analysis of chromatin assembled in vivo using exogenous histones in Physarum polycephalum. Methods 33: 86-92.
    • (2004) Methods , vol.33 , pp. 86-92
    • Thiriet, C.1
  • 37
    • 0033031267 scopus 로고    scopus 로고
    • Chromatin remodeling by cell cycle stage-specific extracts from Physarum polycephalum
    • Thiriet, C. and Hayes, J.J. 1999a. Chromatin remodeling by cell cycle stage-specific extracts from Physarum polycephalum. Eur. J. Cell. Biol. 78: 214-220.
    • (1999) Eur. J. Cell. Biol. , vol.78 , pp. 214-220
    • Thiriet, C.1    Hayes, J.J.2
  • 38
    • 0032824943 scopus 로고    scopus 로고
    • Histone proteins in vivo: Cell-cycle-dependent physiological effects of exogenous linker histones incorporated into Physarum polycephalum
    • _. 1999b. Histone proteins in vivo: Cell-cycle-dependent physiological effects of exogenous linker histones incorporated into Physarum polycephalum. Methods 17: 140-150.
    • (1999) Methods , vol.17 , pp. 140-150
  • 39
    • 0035881855 scopus 로고    scopus 로고
    • A novel labeling technique reveals a function for histone H2A/H2B dimer tail domains in chromatin assembly in vivo
    • _. 2001. A novel labeling technique reveals a function for histone H2A/H2B dimer tail domains in chromatin assembly in vivo. Genes & Dev. 15: 2048-2053.
    • (2001) Genes & Dev. , vol.15 , pp. 2048-2053
  • 40
    • 0021009137 scopus 로고
    • Intranuclear localization of histone acetylation in Physarum polycephalum and the structure of functionally active chromatin
    • Waterborg, J.H. and Matthews, H.R. 1983. Intranuclear localization of histone acetylation in Physarum polycephalum and the structure of functionally active chromatin. Cell Biophys. 5: 265-279.
    • (1983) Cell Biophys. , vol.5 , pp. 265-279
    • Waterborg, J.H.1    Matthews, H.R.2
  • 42
    • 0019303186 scopus 로고
    • The 5′ ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I
    • Wu, C. 1980. The 5′ ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I. Nature 286: 854-860.
    • (1980) Nature , vol.286 , pp. 854-860
    • Wu, C.1
  • 43
    • 0018359588 scopus 로고
    • The chromatin structure of specific genes: II, Disruption of chromatin structure during gene activity
    • Wu, C., Wong, Y.C., and Elgin, S.C. 1979. The chromatin structure of specific genes: II, Disruption of chromatin structure during gene activity. Cell 16: 807-814.
    • (1979) Cell , vol.16 , pp. 807-814
    • Wu, C.1    Wong, Y.C.2    Elgin, S.C.3
  • 44
    • 0035883954 scopus 로고    scopus 로고
    • Transcription regulation by histone methylation: Interplay between different covalent modifications of the core histone tails
    • Zhang, Y. and Reinberg, D. 2001. Transcription regulation by histone methylation: Interplay between different covalent modifications of the core histone tails. Genes & Dev. 15: 2343-2360.
    • (2001) Genes & Dev. , vol.15 , pp. 2343-2360
    • Zhang, Y.1    Reinberg, D.2


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