The histone variant macroH2A interferes with transcription factor binding and SWI/SNF nucleosome remodeling

Molecular Cell

Volumn 11, Issue 4, 2003, Pages 1033-1041

  Angelov, Dimitar ^b   Molla, Annie ^a   Perche, Pierre Yves ^a   Hans, Fabienne ^a   Côté, Jacques ^c   Khochbin, Saadi ^a   Bouvet, Philippe ^b   Dimitrov, Stefan ^a  

^a INSTITUT ALBERT BONNIOT   (France)

^b UNIVERSITÉ DE LYON   (France)

^c LAVAL UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; HISTONE H2A; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; TRANSCRIPTION FACTOR;

ARTICLE; BINDING AFFINITY; CELL STRUCTURE; CONTROLLED STUDY; DNA TRANSCRIPTION; HUMAN; NONHUMAN; NUCLEOSOME; PROTEIN DOMAIN; PROTEIN FUNCTION; TRANSCRIPTION REGULATION;

EID: 0037961635     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(03)00100-X     Document Type: Article

References (54)

1. Abbott D.W., Ivanova V.S., Wang X., Bonner W.M., Ausio J. Characterization of the stability and folding of H2A.Z chromatin particles. Implications for transcriptional activation. J. Biol. Chem. 276:2001;41945-41949.
2. Adams C.C., Workman J.L. The binding of disparate transcription factors to nucleosomal DNA is inherently cooperative. Mol. Cell. Biol. 15:1995;1405-1421.
3. Ahmad K., Henikoff S. Epigenetic consequences of nucleosome dynamics. Cell. 111:2002;281-284. a.
4. Ahmad K., Henikoff S. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol. Cell. 9:2002;1191-1200. b.
5. Angelov D., Charra M., Seve M., Côté J., Khochbin S., Dimitrov S. Differential remodeling of the HIV-1 nucleosome upon transcription activators and SWI/SNF complex binding. J. Mol. Biol. 302:2000;315-326.
6. Arents G., Burlingame R.W., Wang B.-C., Love W.E., Moudrianakis E.N. The nucleosomal core histone octamer at 3.1 Å resolution. a tripartite protein assembly and a left-handed superhelix Proc. Natl. Acad. Sci. USA. 88:1991;10148-10152.
7. Beato M., Eisfeld K. Transcription factor access to chromatin. Nucleic Acids Res. 25:1997;3559-3563.
8. Becker P.B. Nucleosome sliding. facts and fiction EMBO J. 21:2002;4749-4753.
9. Bochar D.A., Savard J., Wang W., Lafleur D.W., Moore P., Cote J., Shiekhattar R. A family of chromatin remodeling factors related to Williams syndrome transcription factor. Proc. Natl. Acad. Sci. USA. 97:2000;1038-1043.
10. Cairns B.R., Lorch Y., Li Y., Zhang M., Lacomis L., Erdjument-Bromage H., Tempst P., Du J., Laurent B., Kornberg R.D. RSC, an essential, abundant chromatin-remodeling complex. Cell. 87:1996;1249-1260.
11. Chadwick B.P., Willard H.F. Histone H2A variants and the inactive X chromosome. identification of a second macroH2A variant Hum. Mol. Genet. 10:2001;1101-1113.
12. Changolkar L.N., Pehrson J.R. Reconstitution of nucleosomes with histone macroH2A1.2. Biochemistry. 41:2002;179-184.
13. Costanzi C., Pehrson J.R. Histone macroH2A1 is concentrated in the inactive X chromosome of female mammals. Nature. 393:1998;599-601.
14. Costanzi C., Pehrson J.R. MacroH2A2, a new member of the macroH2A core histone family. J. Biol. Chem. 276:2001;21776-21784.
15. Côté J., Quinn J., Workman J.L., Peterson C.L. Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science. 265:1994;53-60.
16. Côté J., Peterson C.L., Workman J.L. Perturbation of nucleosome core structure by the SWI/SNF complex persists after its detachement, enhancing subsequent transcription factor binding. Proc. Natl. Acad. Sci. USA. 95:1998;4947-4952.
17. Dhillon N., Kamakaka R.T. A histone variant, Htz1p, and a Sir1p-like protein, Esc2p, mediate silencing at HMR. Mol. Cell. 6:2000;769-780.
18. FitzGerald P.C., Simpson R.T. Effects of sequence alterations in a DNA fragment containing the 5S RNA gene from Lytechinus variegatus on positioning of a nucleosome core particle in vitro. J. Biol. Chem. 260:1985;15318-15324.
19. Hamiche A., Sandaltzopoulos R., Gdula D.A., Wu C. ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF. Cell. 97:1999;833-842.
20. Hans F., Dimitrov S. Histone H3 phosphorylation and cell division. Oncogene. 20:2001;3021-3027.
21. Hayes J.J., Lee K.M. In vitro reconstitution and analysis of mononucleosomes containing defined DNAs and proteins. Methods. 12:1997;2-9.
22. Hayes J.J., Clark D.J., Wolffe A.P. Histone contributions to the structure of DNA in the nucleosome. Proc. Natl. Acad. Sci. USA. 88:1991;6829-6833.
23. Hill D.A., Imbalzano A.N. Human SWI/SNF nucleosome remodeling activity is partially inhibited by linker histone H1. Biochemistry. 39:2000;11649-11656.
24. Ito T., Bulger M., Pazin M.J., Kobayashi R., Kadonaga J.T. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell. 90:1997;145-155.
25. Kornberg R.D., Lorch Y. Chromatin-modifying and -remodeling complexes. Curr. Opin. Genet. Dev. 9:1999;148-151.
26. Langst G., Becker P.B. Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors. J. Cell Sci. 114:2001;2561-2568.
27. Langst G., Bonte E.J., Corona D.F., Becker P.B. Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer. Cell. 97:1999;843-852.
28. Lee K.-M., Hayes J.J. Linker DNA and H1-dependent reorganization of histone-DNA interactions within the nucleosome. Biochemistry. 37:1998;8622-8628.
29. Luger K., Mäder A.W., Richmond R.K., Sargent D.F., Richmond T.J. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature. 389:1997;251-260.
30. Luger K., Rechsteiner T.J., Richmond T.J. Expression and purification of recombinant histones and nucleosome reconstitution. Methods Mol. Biol. 119:1999;1-16.
31. Luger K., Richmond T.J. The histone tails of the nucleosome. Curr. Opin. Genet. Dev. 8:1998;140-146.
32. Mermoud J.E., Costanzi C., Pehrson J.R., Brockdorff N. Histone macroH2A1.2 relocates to the inactive X chromosome after initiation and propagation of X-inactivation. J. Cell Biol. 147:1999;1399-1408.
33. Mutskov V., Gerber D., Angelov D., Ausio J., Workman J., Dimitrov S. Persistent interactions of core histone tails with nucleosomal DNA following acetylation and transcription factor binding. Mol. Cell. Biol. 18:1998;6293-6304.
34. Pahl H.L. Activators and target genes of Rel/NF-kB transcription factors. Oncogene. 18:1999;6853-6866.
35. Pehrson J.R., Fried V.A. MacroH2A, a core histone containing a large nonhistone region. Science. 257:1992;1398-1400.
36. Pehrson J., Fuji R.N. Evolutionary conservation of histone macroH2A subtypes and domains. Nucleic Acids Res. 26:1998;2837-2842.
37. Perche P., Vourch C., Souchier C., Robert-Nicoud M., Dimitrov S., Khochbin C. Higher concentrations of histone macroH2A in the Barr body are correlated with higher nucleosome density. Curr. Biol. 10:2000;1531-1534.
38. Peterson C.L., Tamkun J.W. The SWI-SNF complex. a chromatin remodeling machine? Trends Biochem. Sci. 20:1995;143-146.
39. Peterson C.L., Workman J.L. Promoter targeting and chromatin remodeling by the SWI/SNF complex. Curr. Opin. Genet. Dev. 10:2000;187-192.
40. Santisteban M.S., Kalashnikova T., Smith M.M. Histone H2A.Z regulates transcription and is partially redundant with nucleosome remodeling complexes. Cell. 103:2000;411-422.
41. Steger D.J., Workman J.L. Stable co-occupancy of transcription factors and histones at the HIV-1 enhancer. EMBO J. 16:1997;2463-2472.
42. Strahl B.D., Allis C.D. The language of covalent histone modifications. Nature. 403:2000;41-45.
43. Sudarsanam P., Winston F. The Swi/Snf family nucleosome-remodeling complexes and transcriptional control. Trends Genet. 16:2000;345-351.
44. Sudarsanam P., Cao Y., Wu L., Laurent B.C., Winston F. The nucleosome remodeling complex, Snf/Swi, is required for the maintenance of transcription in vivo and is partially redundant with the histone acetyltransferase, Gcn5. EMBO J. 18:1999;3101-3106.
45. Sudarsanam P., Iyer V.R., Brown P.O., Winston F. Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA. 97:2000;3364-3369.
46. Suto R.K., Clarkson M.J., Tremethick D.J., Luger K. Crystal structure of a nucleosome core particle containing the variant histone H2A.Z. Nat. Struct. Biol. 7:2000;1121-1124.
47. Thiriet C., Hayes J.J. Functionally relevant histone-DNA interactions extend beyond the classically defined nucleosome core region. J. Biol. Chem. 273:1998;21352-21358.
48. Travers A. An engine for nucleosome remodeling. Cell. 96:1999;311-314.
49. Tsanev R., Russev G., Pashev I., Zlatanova J. Replication and Transcription of Chromatin. 1993;CRC Press, Boca Raton, FL.
50. Tsukiyama T., Wu C. Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell. 83:1995;1011-1020.
51. Tsukiyama T., Wu C. Chromatin remodeling and transcription. Curr. Opin. Genet. Dev. 10:1997;182-191.
52. van Holde K. Chromatin. 1988;Springer-Verlag KG, Berlin.
53. Varga-Weisz P.D., Wilm M., Bonte E., Dumas K., Mann M., Becker P.B. Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II. Nature. 388:1997;598-602.
54. Wu C., Tsukiyama T., Gdula D., Georgel P., Martinez-Balbas M., Mizuguchi G., Ossipow V., Sandaltzopoulos R., Wang H.M. ATP-dependent remodeling of chromatin. Cold Spring Harb. Symp. Quant. Biol. 63:1998;525-534.