Advances in algae toolenzymes: alginate lyases

Shengwu Gongcheng Xuebao/Chinese Journal of Biotechnology

Volumn 27, Issue 6, 2011, Pages 838-845

  Li, Liyan ^a   Guan, Huashi ^a   Jiang, Xiaolu ^a   Hao, Jianjun ^a  

^a OCEAN UNIVERSITY OF CHINA   (China)

Author keywords

Alginate; Alginate lyase; Guluronic acid; Mannuronic acid; Oligosaccharide

Indexed keywords

ALGAE;

ALGINIC ACID; GLUCURONIC ACID; HEXURONIC ACID; OLIGOSACCHARIDE; POLY(BETA D MANNURONATE) LYASE; POLY(BETA-D-MANNURONATE) LYASE; POLYSACCHARIDE LYASE;

BROWN ALGA; CLASSIFICATION; ENZYME SPECIFICITY; ENZYMOLOGY; ISOLATION AND PURIFICATION; MARINE BIOLOGY; METABOLISM; METHODOLOGY; REVIEW;

ALGINATES; GLUCURONIC ACID; HEXURONIC ACIDS; MARINE BIOLOGY; OLIGOSACCHARIDES; PHAEOPHYTA; POLYSACCHARIDE-LYASES; SUBSTRATE SPECIFICITY;

EID: 79960983303     PISSN: 10003061     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (48)

1. Kaiser P, Leborgne L, Hardisso C, et al. An exocellular alginate-lyase isolated from Clostridium alginolyticum cultures. C R Acad Sci D, 1968, 267 (3): 376-379.
2. Wong T Y, Preston L A, Schiller N L. Alginate lyase: review of major sources and enzyme characteristics, structure- function analysis, biological roles, and applications. Annu Rev Microbiol, 2000, 54: 289-340.
3. Miyake O, Ochiai A, Hashimoto W, et al. Origin and diversity of alginate lyases of families PL-5 and-7 in Sphingomonas sp. strain A1. J Bacteriol, 2004, 186 (9): 2891-2896.
4. Miyake O, Hashimoto W, Murata K. An exotype alginate lyase in Sphingomonas sp. A: overexpression in Escherichia coli, purification, and characterization of alginate lyse IV (A1-IV). Protein Expr Purif, 2003, 29(1): 33-41.
5. Xiao L, Han F, Yang Z, et al. A novel alginate lyase with high activity on acetylated alginate of Pseudomonas aeruginosa FRD1 from Pseudomonas sp. QD03. World J Microbiol Biotechnol, 2006, 22: 81-88.
6. Miyazaki M, Obata J, Iwamoto Y, et al. Calcium-sensitive extracellular poly (α-L-guluronate) lyase from a marine bacterium Pseudomonas sp. strain F6: purification and some properties. Fisheries Sci, 2001, 67(5): 956-964.
7. Bakkevig K, Sletta H, Gimmestad M, et al. Role of the Pseudomonas fluorescens alginate lyase (AlgL) in clearing the periplasm of alginates not exported to the extracellular environment. J Bacteriol, 2005, 187(24): 8375-8384.
8. Rehm B H A. Alginate lyase from Pseudomonas aeruginosa CF1/M1 prefers the hexameric oligomannuronate as substrate. FEMS Microbiol Lett, 1998, 165(1): 175-180.
9. Kraiwattanapong J, Motomura K, Ooi T, et al. Characterization of alginate lyase (ALYII) from Pseudomonas sp. OS-ALG-9 expressed in recombinant Escherichia coli. World J Microbiol Biotechnol, 1999, 15(1): 105-109.
10. Preston L A, Wong T Y, Bender C L, et al. Characterization of alginate lyase from Pseudomonas syringae pv. syringae. J Bacteriol, 2000, 182(21): 6268-6271.
11. Kawamoto H, Horibe A, Miki Y, et al. Cloning and sequencing analysis of alginate lyase genes from the marine bacterium Vibrio sp. O2. Mar Biotechnol, 2006, 8(5): 481-490.
12. Gimmestad M, Ertesvag H, Heggeset T M B, et al. Characterization of three new Azotobacter vinelandii alginate lyases, one of which is involved in cyst germination. J Bacteriol, 2009, 191(15): 4845-4853.
13. Østgaard K, Knutsena S H, Dyrset N, et al. M. Production and characterization of guluronate lyase from Klebsiella pneumoniae for applications in seaweed biotechnology. Enzyme Microb Technol, 1993, 15(9): 756-763.
14. An Q D, Zhang G L, Wu H T, et al. Alginate-deriving oligosaccharide production by alginase from newly isolated Flavobacterium sp. LXA and its potential application in protection against pathogens. J Appl Microbiol, 2009, 106(1): 161-170.
15. Matsubara Y, Kawada R, Iwasaki K, et al. Cloning and sequence analysis of a gene (aly PG) encoding poly (alpha-L-guluronate) lyase from Corynebacterium sp. strain ALY-1. J Biosci Bioeng, 2000, 89(2): 199-202.
16. Nakagawa A, Ozaki T, Chubachi K, et al. An effective method for isolating alginate lyase-producing Bacillus sp. ATB-1015 strain and purification and characterization of the lyase. J Appl Microbiol, 1998, 84(3): 328-335.
17. Iwamoto Y, Araki R, Iriyama K I, et al. Purification and characterization of bifunctional alginate lyase from Alteromonas sp. No. 272 and its action on saturated oligomeric substrates. Biosci Biotechnol Biochem, 2001, 65(1): 133-142.
18. Ma L Y, Chi Z M, Li J, et al. Overexpression of alginate lyase of Pseudoaltetmonas elyakovii in Escherichia coli, purification, and characterization of the recombinant alginate lyase. World J Microbiol Biotechnol, 2008, 24(1): 89-96.
19. Duan G F, Han F, Yu W G. Cloning, sequence analysis, and expression of gene alyPI encoding an alginate lyase from marine bacterium Pseudoalteromonas sp. CY24. Can J Microbiol, 2009, 55: 1113-1118.
20. Shimokawa T, Yoshida S, Kusakabe I, et al. Some properties and action mode of (1 → 4)-α-L-guluronan lyase from Enterobacter cloacae M-1. Carbohydr Res, 1997, 304(2), 125-132.
21. Cao L X, Xie L J, Xue X L, et al. Purification and characterization of alginate lyase from Streptomyces species strain A5 isolated from banana rhizosphere. J Agric Food Chem, 2007, 55(13), 5113-5117.
22. Kim D E, Lee E Y, Kim H S. Cloning and characterization of alginate lyase from a marine bacterium Streptomyces sp. ALG-5. Mar Biotechnol, 2009, 11(1): 10-16.
23. Kobayashi T, Uchimura K, Miyazaki M, et al. A new high-alkaline alginate lyase from a deep-sea bacterium Agarivorans sp.. Extremophiles, 2009, 13(1): 121-129.
24. Hata M, Kumagai Y, Rahman M M, et al. Comparative study on general properties of alginate lyases from some marine gastropod mollusks. Fisheries Sci, 2009, 75(3): 755-763.
25. Suda K, Tanji Y, Hori K, et al. Evidence for a novel Chlorella virus-enconded alginate lyase. FEMS Microbiol Lett, 1999, 180(1): 45-53.
26. Gacesa P. Enzymic degradation of alginates. Int J Biochem, 1992, 24: 545-552.
27. Yonemoto Y, Tanaka H, Hisano T, et al. Bacterial alginate lyase gene: nucleotide sequence and molecular route for generation o alginate lyase species. J Ferment Bioeng, 1993, 75(5): 336-342.
28. Hashimoto W, Okamoto M, Hisano T, et al. Sphingomonas sp. A1 lyase active on both poly-β-D-mannuronate and heteropolymeric regions in alginate. J Ferment Bioeng, 1998, 86(2): 236-238.
29. Yoon H J, Mikami B, Hashimoto W, et al. Crystal structure of alginate lyase A1-III from Sphingomonas species A1 at 1.78 Å resolution. J Mol Biol, 1999, 290(2): 505-514.
30. Miyake O, Hashimoto W, Murata K. An exotype alginate lyase in Sphingomonas sp. A1: overexpression in Escherichia coli, purification, and characterization of alginate lyase IV (A1-IV). Protein Expr Purif, 2003, 29(1): 33-41.
31. Yoon H J, Choi Y J, Miyake O, et al. Effect of His192 mutation on the activity of alginate lyase A1-III from Sphingomonas species A1. J Microbiol Biotechnol, 2001, 11(1): 118-123.
32. Hashimoto W, Miyake O, Ochiai A, et al. Molecular identification of Sphingomonas sp. A1 alginate lyase (A1-IV') as a member of novel polysaccharide lyase family 15 and implications in alginate lyase evolution. J Biosci Bioeng, 2005, 99(1): 48-54.
33. Yamasaki M, Ogura K, Moriwaki S, et al. Crystallization and preliminary X-ray analysis of alginate lyases A1-II and A1-II' from Sphingomonas sp. A1. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2005, 61(Pt 3): 288-290.
34. Ogura K, Yamasaki M, Mikami B, et al. Substrate recognition by family 7 alginate lyase from Sphingomonas sp. A1. J Mol Biol, 2008, 380(2): 373-385.
35. Preiss J, Ashwell G. Alginic acid metabolism in bacteria. J Biol Chem, 1962, 237(2): 309-316.
36. Sawabe T, Ohtsuka M, Ezura Y. Novel alginate lyases from marine bacterium Alteromonas sp. strain H-4. Carbohydr Res, 1997, 304(1): 69-76.
37. Nelson N. A photometric adaptation of the somogyi method for the determination of glucose. J Biol Chem 1944, 153: 375-380.
38. Hu X K, Jiang X L, Hwang H M. Purification and characterization of an alginate lyase from marine bacterium Vibrio sp. Mutant strain 510-64. Curr Microbiol, 2006, 53(2): 135-140.
39. Song K, Yu W G, Han F, et al. Purification and characterization of aginate lyase from marine bacterium Vibrio sp. QY101. Acta Biochem Biophys Sin, 2003, 35(5): 473-477.
40. Wang Y H, Yu G L, Wang X M, et al. Purification and characterization of alginate lyase from marine Vibrio sp. YWA. Acta Biochem Biophys Sin, 2006, 38(9): 633-638.
41. + dependent alginate lyase from turban shell gut Vibrio sp. YKW-34. Enzym Microb Technol, 2007, 41(6/7): 828-834.
42. Lange B, Wingender J, Winkler U K. Isolation and characterization of an alginate lyase from Klebsiella aerogenes. Arch Microbiol, 1989, 152(3): 302-308.
43. Ertesvag H, Erlien F, Skjak-Braek G, et al. Biochemical properties and substrate specificities of a recombinantly produced Azotobacter vinelandii alginate lyase. J Bacteriol, 1998, 180(15): 3779-3784.
44. Heyraud A, Colin-Morel P, Girond S, et al. HPLC analysis of saturated or unsaturated oligoguluronates and oligomannuronates. Application to the determination of the action pattern of Haliotis tuberculata alginate lyase. Carbohydr Res, 1996, 291(23): 115-126.
45. Sawabe T, Takahashi H, Saeki H, et al. Enhanced expression of active recombinant alginate lyase AlyPEEC cloned from a marine bacterium Pseudomonas elyakovii in Escherichia coli by calcium compounds. Enzyme Microb Technol, 2007(2), 40: 285-291.
46. Matsubara Y, Kawada R, Iwasaki K I, et al. Extracellular poly (alpha-L-guluronate) lyase from Corynebacterium sp.: purification, characteristics and conformational properties. J Protein Chem, 1998, 17(1): 29-36.
47. Davidson I W, Sutherland I W, Lawson C J. Purification and properties of an alginate lyase form a marine bacterium. Biochem J, 1976, 159: 707-713.
48. Tang J C, Taniguchi H, Chu H, et al. Isolation and characterization of alginate-degrading bacteria for disposal of seaweed wastes. Lett Appl Microbiol, 2009, 48(1): 38-43.