Cloning and characterization of alginate lyase from a marine bacterium Streptomyces sp. ALG-5

Marine Biotechnology

Volumn 11, Issue 1, 2009, Pages 10-16

  Kim, Dong Eun ^a   Lee, Eun Yeol ^b   Kim, Hee Sook ^a  

^a Kyungsung University   (South Korea)

^b Kyung Hee University   (South Korea)

Author keywords

Alginate lyase; Alginate oligosaccharide; Streptomyces sp. ALG 5; Unsaturated uronate

Indexed keywords

16S RIBOSOMAL DNAS; ALGINATE LYASE; ALGINATE OLIGOSACCHARIDE; CONSENSUS SEQUENCES; DEGRADED PRODUCTS; GEL-FILTRATION CHROMATOGRAPHIES; MARINE BACTERIUM; MASS SPECTROSCOPIES; N TERMINALS; NUCLEOTIDE SEQUENCES; PENTASACCHARIDES; SPECIFIC PRIMERS; STREPTOMYCES SP. ALG-5; UNSATURATED URONATE;

AFFINITY CHROMATOGRAPHY; CHARACTERIZATION; CHROMATOGRAPHIC ANALYSIS; CHROMATOGRAPHY; CLONING; GEL PERMEATION CHROMATOGRAPHY; GELATION; GENETIC ENGINEERING; MASS SPECTROMETRY; NUCLEIC ACIDS; ORGANIC ACIDS; POROUS MATERIALS; PORT TERMINALS; SPECTROSCOPIC ANALYSIS;

ALGINATE;

ALGINIC ACID; BACTERIAL PROTEIN; GLUCURONIC ACID; HEXURONIC ACID; POLY(BETA D MANNURONATE) LYASE; POLY(BETA-D-MANNURONATE) LYASE; POLYSACCHARIDE LYASE;

ALGINATE; BACTERIUM; CHROMATOGRAPHY; CLONE; DNA; GENE; IONIZATION; MASS SPECTROMETRY; WEED;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; ENZYMOLOGY; GENETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; PHYLOGENY; STREPTOMYCES;

ALGINATES; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CLONING, MOLECULAR; GLUCURONIC ACID; HEXURONIC ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYSACCHARIDE-LYASES; STREPTOMYCES;

BACTERIA (MICROORGANISMS); STREPTOMYCES; STREPTOMYCES SP.; TETRA;

EID: 58849111747     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-008-9114-9     Document Type: Article

References (20)

1. H Akiyama T Endo R Nakakita K Murata Y Yonemoto K Okayama 1992 Effect of depolymerized alginates on the growth of bifidobacteria Biosci Biotechnol Biochem 56 355 356
2. L Cao L Xie X Xue H Tan Y Liu S Zhou 2007 Purification and characterization of alginate lyase from Streptomyces species strain A5 isolated from banana rhizosphere J Agric Food Chem 55 5113 5117
3. GL Cote LH Krull 1988 Characterization of the extracellular polysaccharides from Azotobacter chroococcum Carbohydr Res 181 143 152
4. MY Fan ZP Lum XW Fu L Levesque IT Tai AM Sun 1990 Reversal of diabetes in BB rats by transplantation of encapsulated pancreatic islets Diabetes 39 519 522
5. M Fujihara T Nagumo 1992 The effect of the content of d-mannuronic acid and l-guluronic acid blocks in alginates on antitumor activity Carbohydr Res 224 343 347
6. JRW Grovan JAM Fyfe TR Jarman 1981 Isolation of alginate-producing mutants of Pseudomonas fluorescens, Pseudomonas putida and Pseudomonas mendocina J Gen Microbiol 125 217 220
7. A Haug B Larsen O Smidsrot 1966 A study of the constitution of alginic acid by partial acid hydrolysis Acta Chem Scand 20 183 190
8. N Iizima-Mizui M Fujihara H Himeno K Komiyama I Umezawa T Nagumo 1985 Antitumor activity of polysaccharide fractions from the brown seaweed Sargassum kjelimanianum Kitasato Arch Exp Med 58 59 71
9. M Iwamoto M Kurachi T Nakashima D Kim K Yamaguch T Oda Y Iwamoto T Muramatsu 2005 Structure-activity relationship of alginate oligosaccharides in the induction of cytokine production from RAW264.7 cells FEBS Lett 579 4423 4429
10. A Kawada N Hiura S Tajima H Takahara 1999 Alginate oligosaccharides stimulate VEGF-mediated growth and migration of human endothelial cells Arch Dermatol Res 291 542 547
11. H Kawamoto A Horibe Y Miki T Kimura K Tanaka T Nakagawa M Kawamukai H Matsuda 2006 Cloning and sequencing analysis of alginate lyase genes from the marine bacterium Vibrio sp O2. Mar Biotechnol 8 481 490
12. HS Kim OK Lee SJ Lee S Hwang SJ Kim S-H Yang S Park EY Lee 2006 Enantioselective epoxide hydrolase activity of a newly isolated microorganism, Sphingomonas echinoides EH-983, from seawater J Mol Catal B Enzym 41 130 135
13. Y Matsubara R Kawada K Iwasaki Y Kimura T Oda T Muramatsu 2000 Cloning and sequence analysis of a gene (aly PG) encoding poly(a-l-guluronate) lyase from Corynebacterium sp Strain ALY-1. J Biosci Bioeng 89 199 202
14. TCR Ndowora LL Kinkel RK Jones NA Anderson 1996 Fatty acid analysis of pathogenic and suppressive strains of Streoptomyces species isolated in Minnesota Phytopathology 86 138 143
15. T Osawa Y Matsubara T Muramatsu M Kimura Y Kakuta 2005 Crystal structure of the alginate (poly-a-l-guluronate) lyase from Corynebacterium sp. at 1.2Å resolution J Mol Biol 345 1111 1118
16. CD Scott 1987 Immobilized cells: a review of recent literature Enzyme Microb Technol 9 66 73
17. TY Wong LA Preston NL Schiller 2000 Alginate lyase: review of major sources and enzyme characteristics, structure-function analysis, biological roles, and application Annu Rev Microbiol 54 289 340
18. Y Yanemoto H Tanaka T Yamashita N Kitabatake Y Ishida A Kimura K Murata 1993 Promotion of germination and shoot elongation of some plants by alginate oligomers prepared with bacterial alginate lyase Ferment Bioeng 75 68 70
19. H-J Yoon W Hashimoto O Miyake M Okamoto B Mikami K Murata 2000 Overexpression in Escherichia coli, purification, and characterization of Sphingomonas sp. A1 alginate lyase Protein Expr Purif 19 84 90
20. Z Zhang G Yu H Guan X Zhao Y Du X Jiang 2004 Preparation and structure elucidation of alginate oligosaccharides degraded by alginate lyase from Vibrio sp. 510 Carbohydr Res 258 187 197