Engineering highly thermostable xylanase variants using an enhanced combinatorial library method

Protein Engineering, Design and Selection

Volumn 24, Issue 8, 2011, Pages 597-605

  Hokanson, Craig A ^a   Cappuccilli, Guido ^a   Odineca, Tatjana ^a   Bozic, Marino ^a   Behnke, Craig A ^b   Mendez, Michael ^b   Coleman, William J ^a   Crea, Roberto ^a  

^a Sapphire Energy Inc ^*  (United States)

^b Sapphire Energy Inc   (United States)

Author keywords

Combinatorial beneficial mutagenesis ; directed evolution; Look Through Mutagenesis ; thermostability

Indexed keywords

ENZYMES; STABILITY;

COMBINATORIAL LIBRARY METHOD; DIRECTED EVOLUTION; DIRECTED EVOLUTION METHODS; PROTEIN SEQUENCES; THERAPEUTIC ENZYME; THERMOSTABILITY; THERMOSTABLE XYLANASE; TRICHODERMA REESEI;

MUTAGENESIS;

XYLAN ENDO 1,3 BETA XYLOSIDASE;

AMINO ACID SEQUENCE; ARTICLE; COMBINATORIAL LIBRARY; ENZYME STABILITY; GENE MUTATION; HYPOCREA JECORINA; MUTAGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYSICAL CHEMISTRY; PRIORITY JOURNAL; PROTEIN ENGINEERING;

HYPOCREA JECORINA;

EID: 79960335077     PISSN: 17410126     EISSN: 17410134     Source Type: Journal    
DOI: 10.1093/protein/gzr028     Document Type: Article

References (44)

1. Arase, A., Yomo, T., Urabe, I., Hata, Y., Katsube, Y. and Okada, H. (1993) FEBS Lett., 316, 123-127.
2. Bajpai, P. (2004) Crit. Rev. Biotechnol., 24, 1-58.
3. Beg, Q.K., Kapoor, M., Mahajan, L. and Hoondal, G.S. (2001) Appl. Microbiol. Biotechnol., 56, 326-338.
4. Cereghino, J.L. and Cregg, J.M. (2000) FEMS Microbiol. Rev., 24, 45-66.
5. Chen, K.Q. and Arnold, F.H. (1991) Biotechnology (NY), 9, 1073-1077.
6. Chen, K. and Arnold, F.H. (1993) Proc. Natl Acad. Sci. USA, 90, 5618-5622.
7. Cunningham, B.C. and Wells, J.A. (1989) Science, 244, 1081-1085.
8. Damaso, M.C., Almeida, M.S., Kurtenbach, E., Martins, O.B., Pereira, N., Jr., Andrade, C.M. and Albano, R.M. (2003) Appl. Environ. Microbiol., 69, 6064-6072.
9. Delagrave, S. and Murphy, D.J. (2003) Assay Drug Dev. Technol., 1, 187-198.
10. Delagrave, S., Goldman, E.R. and Youvan, D.C. (1993) Protein Eng., 6, 327-331.
11. Dumon, C., et al. (2008) J. Biol. Chem., 283, 22557-22564.
12. Fenel, F., Leisola, M., Jänis, J. and Turunen, O. (2004) J. Biotechnol., 108, 137-143.
13. Hancock, S.M., Vaughan, M.D. and Withers, S.G. (2006) Curr. Opin. Chem. Biol., 10, 509-519.
14. He, J., Yu, B., Zhang, K., Ding, X. and Chen, D. (2009) BMC Biotechnol., 9, 56.
15. Jäckel, C. and Hilvert, D. (2110) Curr. Opin. Biotechnol., 21, 753-759.
16. Kaur, J. and Sharma, R. (2006) Crit. Rev. Biotechnol., 26, 165-199.
17. Luetz, S., Giver, L. and Lalonde, J. (2008) Biotechnol. Bioeng., 101, 647-653.
18. Mchunu, N.P., Singh, S. and Permaul, K. (2009) J. Biotechnol., 141, 26-30.
19. Morley, K.L. and Kazlauskas, R.J. (2005) Trends Biotechnol., 23, 231-237
20. Oliphant, A.R. and Struhl, K. (1989) Proc. Natl Acad. Sci. USA, 86, 9094-9098.
21. Palackal, N., et al. (2004) Protein Sci., 13, 494-503.
22. Polizeli, M.L., Rizzatti, A.C., Monti, R., Terenzi, H.F., Jorge, J.A. and Amorin, D.S. (2005) Appl. Microbiol. Biotechnol., 67, 577-591.
23. Polizzi, K.M., Spencer, C.U., Dubey, A., Matsumura, I., Lee, J.H., Realff, M.J. and Bommarius, A.S. (2005) J Biomol. Screen., 10, 856-864.
24. Polizzi, K.M., Parikh, M., Spencer, C.U., Matsumura, I., Lee, J.H., Realff, M.J. and Bommarius, A.S. (2006) Biotechnol. Prog., 22, 961-967.
25. Rajpal, A., Beyaz, N., Haber, L., Cappuccilli, G., Yee, H., Bhatt, R.R., Takeuchi, T., Lerner, R.A. and Crea, R. (2005) Proc. Natl Acad. Sci. USA, 102, 8466-8471.
26. Reetz, M.T. and Carballeira, J.D. (2007) Nat. Protoc., 2, 891-903.
27. Ruller, R., Deliberto, L., Ferreira, T.L. and Ward, R.J. (2008) Proteins, 70, 1280-1293.
28. Sen, S., Venkata Dasu, V. and Mandal, B. (2007) Appl. Biochem. Biotechnol., 143, 212-223.
29. Shibuya, H., Kaneko, S. and Hayashi, K. (2000) Biochem. J., 349, 651-656.
30. Short, J.M. (2001) Saturation Mutagenesis in Directed Evolution. US Patent 6, 171, 820.
31. Sriprang, R., Asano, K., Gobsuk, J., Tanapongpipat, S., Champreda, V. and Eurwilaichitr, L. (2006) J. Biotechnol., 126, 454-462.
32. Stemmer, W.P. (1994) Proc. Natl Acad. Sci. USA, 91, 10747-10751.
33. Stephens, D.E., Rumbold, K., Permaul, K., Prior, B.A. and Singh, S. (2007) J. Biotechnol., 127, 348-354.
34. Stephens, D.E., Singh, S. and Permaul, K. (2009) FEMS Microbiol. Lett., 293, 42-47.
35. Subramaniyan, S. and Prema, P. (2002) Crit. Rev. Biotechnol., 22, 33-64.
36. Sung, W.L., Yaguchi, M. and Ishikawa, K. (1998) Modification of xylanase to improve thermophilicity, alkalophilicity and thermostability. US Patent 5, 759, 840.
37. Törrönen, A. and Rouvinen, J. (1995) Biochemistry, 34, 847-856.
38. Turner, N.J. (2009) Nat. Chem. Biol., 5, 567-573.
39. Turunen, O., Etuaho, K., Fenel, F., Vehmaanperä, J., Wu, X., Rouvinen, J. and Leisola, M. (2001) J. Biotechnol., 88, 37-46.
40. Turunen, O., Vuorio, M., Fenel, F. and Leisola, M. (2002) Protein Eng., 15, 141-145.
41. Uniewicz, K.A., Ori, A., Xu, R., Ahmed, Y., Wilkinson, M.C., Fernig, D.G. and Yates, E.A. (2010) Anal Chem., 82, 3796-3802.
42. Wakarchuk, W.W., Sung, W.L., Campbell, R.L., Cunningham, A., Watson, D.C. and Yaguchi, M. (1994) Protein Eng., 7, 1379-1386.
43. Winter, G., Fersht, A.R., Wilkinson, A.J., Zoller, M. and Smith, M. (1982) Nature, 299, 756-758.
44. Xiong, H., Fenel, F., Leisola, M. and Turunen, O. (2004) Extremophiles, 8, 393-400.