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Volumn 10, Issue 8, 2005, Pages 856-864

Simulation modeling of pooling for combinatorial protein engineering

Author keywords

Directed evolution; High throughput screening; Monte Carlo simulation; Protein engineering

Indexed keywords

BETA GALACTOSIDASE; BETA GLUCURONIDASE; ENZYME; GENOMIC DNA; PROTEIN;

EID: 29144520637     PISSN: 10870571     EISSN: 1552454X     Source Type: Journal    
DOI: 10.1177/1087057105280134     Document Type: Article
Times cited : (8)

References (27)
  • 2
    • 0038359109 scopus 로고    scopus 로고
    • Error-tolerant pooling designs with inhibitors
    • Hwang F. Liu Y: Error-tolerant pooling designs with inhibitors. J Comput Biol 2003:10:231-236.
    • (2003) J Comput Biol , vol.10 , pp. 231-236
    • Hwang, F.1    Liu, Y.2
  • 3
    • 0031170571 scopus 로고    scopus 로고
    • The design of pooling experiments for screening a clone map
    • Balding DJ. Torney DC: The design of pooling experiments for screening a clone map. Fungal Genet Biol 1997:21:302-307.
    • (1997) Fungal Genet Biol , vol.21 , pp. 302-307
    • Balding, D.J.1    Torney, D.C.2
  • 4
    • 0026072844 scopus 로고
    • Theoretical analysis of library screening using a n-dimensional pooling strategy
    • Barillot E, Lacroix B, Cohen D: Theoretical analysis of library screening using a n-dimensional pooling strategy. Nucleic Acids Res 1991:19:6241-6247.
    • (1991) Nucleic Acids Res , vol.19 , pp. 6241-6247
    • Barillot, E.1    Lacroix, B.2    Cohen, D.3
  • 6
    • 0034760329 scopus 로고    scopus 로고
    • A clone-array pooled shotgun strategy for sequencing large genomes
    • Cai W-W, Chen R, Gibbs RA. Bradley A: A clone-array pooled shotgun strategy for sequencing large genomes. Genome Res 2001:11:1619-1623.
    • (2001) Genome Res , vol.11 , pp. 1619-1623
    • Cai, W.-W.1    Chen, R.2    Gibbs, R.A.3    Bradley, A.4
  • 8
    • 1842680967 scopus 로고    scopus 로고
    • Reproducibility, sources of variability, pooling, and sample size: Important considerations for the design of high-density oligonucleotide array experiments
    • Han E-S, Wu Y, McCarter R, Nelson JF: Reproducibility, sources of variability, pooling, and sample size: important considerations for the design of high-density oligonucleotide array experiments. J Gerontol 2004:59A:306-315.
    • (2004) J Gerontol , vol.59 A , pp. 306-315
    • Han, E.-S.1    Wu, Y.2    McCarter, R.3    Nelson, J.F.4
  • 10
    • 0034886250 scopus 로고    scopus 로고
    • Pooling of samples for seroepidemiological surveillance of human T-cell lymphotrophic virus types I and II
    • Andersson S, Gessain A, Taylor GP: Pooling of samples for seroepidemiological surveillance of human T-cell lymphotrophic virus types I and II. Virus Res 2001:78:101-106.
    • (2001) Virus Res , vol.78 , pp. 101-106
    • Andersson, S.1    Gessain, A.2    Taylor, G.P.3
  • 11
    • 1542712384 scopus 로고    scopus 로고
    • Plasma pooling methodology as a faster and cheaper tool to evaluate bioequivalence of rifampicin component of FDCs of antitubercular drugs
    • Panchagnula R, Sharma A, Agrawal S: Plasma pooling methodology as a faster and cheaper tool to evaluate bioequivalence of rifampicin component of FDCs of antitubercular drugs. Pharmacol Res 2003:48:655-663.
    • (2003) Pharmacol Res , vol.48 , pp. 655-663
    • Panchagnula, R.1    Sharma, A.2    Agrawal, S.3
  • 12
    • 0033005491 scopus 로고    scopus 로고
    • Analysis of multistage pooling studies of biological specimens for estimating disease incidence and prevalence
    • Brookmeyer R: Analysis of multistage pooling studies of biological specimens for estimating disease incidence and prevalence. Biometrics 1999:55:608-612.
    • (1999) Biometrics , vol.55 , pp. 608-612
    • Brookmeyer, R.1
  • 13
    • 0028050350 scopus 로고
    • Rapid evolution of a protein in vitro by DNA shuffling
    • Stemmer WPC: Rapid evolution of a protein in vitro by DNA shuffling. Nature 1994:370:389-391.
    • (1994) Nature , vol.370 , pp. 389-391
    • Stemmer, W.P.C.1
  • 15
    • 0033059278 scopus 로고    scopus 로고
    • Evolutionary approaches to protein engineering
    • Steipe B: Evolutionary approaches to protein engineering. Curr Topics Microbiol Immumol 1999:243:55-86.
    • (1999) Curr Topics Microbiol Immumol , vol.243 , pp. 55-86
    • Steipe, B.1
  • 17
    • 0026055308 scopus 로고
    • A classification of glycosyl hydrolases based on amino acid sequence similarities
    • Henrissat B: A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J 1991:280(Pt 2):309-316.
    • (1991) Biochem J , vol.280 , Issue.PART 2 , pp. 309-316
    • Henrissat, B.1
  • 18
    • 0028175669 scopus 로고
    • The active site and mechanism of the beta-galactosidase from Escherichia coli
    • Huber R. Gupta M, Khare S: The active site and mechanism of the beta-galactosidase from Escherichia coli. Int J Biochem 1994:26:309-318.
    • (1994) Int J Biochem , vol.26 , pp. 309-318
    • Huber, R.1    Gupta, M.2    Khare, S.3
  • 19
    • 0041324888 scopus 로고    scopus 로고
    • A comparison of directed evolution approaches using the b-glucuronidase model system
    • Rowe LA, Geddie ML, Alexander OB. Matsumura I: A comparison of directed evolution approaches using the b-glucuronidase model system. J Mol Biol 2003:332:851-860.
    • (2003) J Mol Biol , vol.332 , pp. 851-860
    • Rowe, L.A.1    Geddie, M.L.2    Alexander, O.B.3    Matsumura, I.4
  • 20
    • 0035846958 scopus 로고    scopus 로고
    • In vitro evolution of beta-glucuronidase into a beta-galactosidase proceeds through non-specific intermediates
    • Matsumura I, Ellington AD: In vitro evolution of beta-glucuronidase into a beta-galactosidase proceeds through non-specific intermediates. J Mol Biol 2001:305:331-339.
    • (2001) J Mol Biol , vol.305 , pp. 331-339
    • Matsumura, I.1    Ellington, A.D.2
  • 21
    • 2942739036 scopus 로고    scopus 로고
    • Rapid evolution of b-glucuronidase specificity by saturation mutagenesis of an active site loop
    • Geddie ML, Matsumura I: Rapid evolution of b-glucuronidase specificity by saturation mutagenesis of an active site loop. J Biol Chem 2004:279:26462- 26468.
    • (2004) J Biol Chem , vol.279 , pp. 26462-26468
    • Geddie, M.L.1    Matsumura, I.2
  • 22
    • 0001341735 scopus 로고    scopus 로고
    • Introduction to Monte Carlo methods
    • Jordan MI (ed). Dordrecht, the Netherlands: Kluwer Academic
    • MacKay DJC: Introduction to Monte Carlo methods. In Jordan MI (ed): Learning in Graphical Models. Dordrecht, the Netherlands: Kluwer Academic, 1998:175-204.
    • (1998) Learning in Graphical Models , pp. 175-204
    • MacKay, D.J.C.1
  • 24
    • 29144535149 scopus 로고    scopus 로고
    • Retrieved from http://hoschek.home.cern.ch/hoschek/colt/V1.0.3/doc/ overview-summary.html
  • 25
    • 18044363663 scopus 로고    scopus 로고
    • Whole plasmid mutagenic PCR for directed protein evolution
    • accepted for publication
    • Matsumura I. Rowe LA: Whole plasmid mutagenic PCR for directed protein evolution. Biomol Eng; accepted for publication.
    • Biomol Eng
    • Matsumura, I.1    Rowe, L.A.2
  • 26
    • 0035092559 scopus 로고    scopus 로고
    • Optimization of heterologous gene expression for in vitro evolution
    • Matsumura I. Olsen M, Ellington A: Optimization of heterologous gene expression for in vitro evolution. BioTechniques 2001:30:474-476.
    • (2001) BioTechniques , vol.30 , pp. 474-476
    • Matsumura, I.1    Olsen, M.2    Ellington, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.