-
1
-
-
38849088221
-
Diffusion of glycerol through Escherichia coli aquaglyceroporin GlpF
-
DOI 10.1529/biophysj.107.115105
-
Hénin J, Tajkhorshid E, Schulten K, Chipot C (2008) Diffusion of glycerol through Escherichia coli aquaglyceroporin GlpF. Biophys J 94:832-839. (Pubitemid 351187687)
-
(2008)
Biophysical Journal
, vol.94
, Issue.3
, pp. 832-839
-
-
Henin, J.1
Tajkhorshid, E.2
Schulten, K.3
Chipot, C.4
-
2
-
-
58049154645
-
Water as a biomolecule
-
Ball P (2008) Water as a biomolecule. Chemphyschem 9:2677-2685.
-
(2008)
Chemphyschem
, vol.9
, pp. 2677-2685
-
-
Ball, P.1
-
3
-
-
33750286994
-
Opinion - Do we underestimate the importance of water in cell biology?
-
Chaplin M (2006) Opinion - Do we underestimate the importance of water in cell biology? Nat Rev Mol Cell Biol 7:861-866.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 861-866
-
-
Chaplin, M.1
-
5
-
-
77749285768
-
Equilibrium study of protein denaturation by urea
-
Canchi DR, Paschek D, Garcia AE (2010) Equilibrium study of protein denaturation by urea. J Am Chem Soc 132:2338-2344.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 2338-2344
-
-
Canchi, D.R.1
Paschek, D.2
Garcia, A.E.3
-
6
-
-
77951669557
-
Chemistry of Hofmeister anions and osmolytes
-
Zhang YJ, Cremer PS (2010) Chemistry of Hofmeister anions and osmolytes. Annu Rev Phys Chem 61:63-83.
-
(2010)
Annu Rev Phys Chem
, vol.61
, pp. 63-83
-
-
Zhang, Y.J.1
Cremer, P.S.2
-
7
-
-
55949132427
-
Protein denaturation by urea: Slash and bond
-
Rossky PJ (2008) Protein denaturation by urea: Slash and bond. Proc Natl Acad Sci USA 105:16825-16826.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 16825-16826
-
-
Rossky, P.J.1
-
8
-
-
76749109966
-
Hydrogen bonding progressively strengthens upon transfer of the protein urea-denatured state to water and protecting osmolytes
-
Holthauzen LMF, Rosgen J, Bolen DW (2010) Hydrogen bonding progressively strengthens upon transfer of the protein urea-denatured state to water and protecting osmolytes. Biochemistry 49:1310-1318.
-
(2010)
Biochemistry
, vol.49
, pp. 1310-1318
-
-
Holthauzen, L.M.F.1
Rosgen, J.2
Bolen, D.W.3
-
9
-
-
51649087154
-
Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model
-
O'Brien EP, Ziv G, Haran G, Brooks BR, Thirumalai D (2008) Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model. Proc Natl Acad Sci USA 105:13403-13408.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13403-13408
-
-
O'Brien, E.P.1
Ziv, G.2
Haran, G.3
Brooks, B.R.4
Thirumalai, D.5
-
12
-
-
0034604660
-
Femtochemistry: Atomic-scale dynamics of the chemical bond using ultrafast lasers-(Nobel lecture)
-
Zewail AH (2000) Femtochemistry: Atomic-scale dynamics of the chemical bond using ultrafast lasers-(Nobel lecture). Angew Chem Int Ed Engl 39:2586-2631.
-
(2000)
Angew Chem Int Ed Engl
, vol.39
, pp. 2586-2631
-
-
Zewail, A.H.1
-
13
-
-
42149186359
-
Solvent molecules bridge the mechanical unfolding transition state of a protein
-
DOI 10.1073/pnas.0706075105
-
Dougan L, Fang G, Lu H, Fernandez JM (2008) Solvent molecules bridge the mechanical unfolding transition state of a protein. Proc Natl Acad Sci USA 105:3185-3190. (Pubitemid 351723529)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.9
, pp. 3185-3190
-
-
Dougan, L.1
Feng, G.2
Lu, H.3
Fernandez, J.M.4
-
14
-
-
1542513548
-
Force-Clamp Spectroscopy Monitors the Folding Trajectory of a Single Protein
-
DOI 10.1126/science.1092497
-
Fernandez JM, Li H (2004) Force-clamp spectroscopy monitors the folding trajectory of a single protein. Science 303:1674-1678. (Pubitemid 38338326)
-
(2004)
Science
, vol.303
, Issue.5664
, pp. 1674-1678
-
-
Fernandez, J.M.1
Li, H.2
-
15
-
-
58049172322
-
A single-molecule perspective on the role of solvent hydrogen bonds in protein folding and chemical reactions
-
Dougan L, Koti ASR, Genchev G, Lu H, Fernandez JM (2008) A single-molecule perspective on the role of solvent hydrogen bonds in protein folding and chemical reactions. Chemphyschem 9:2836-2847.
-
(2008)
Chemphyschem
, vol.9
, pp. 2836-2847
-
-
Dougan, L.1
Koti, A.S.R.2
Genchev, G.3
Lu, H.4
Fernandez, J.M.5
-
16
-
-
67649774601
-
Osmolyte-induced separation of the mechanical folding phases of ubiquitin
-
Garcia-Manyes S, Dougan L, Fernandez JM (2009) Osmolyte-induced separation of the mechanical folding phases of ubiquitin. Proc Natl Acad Sci USA 106:10540-10545.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 10540-10545
-
-
Garcia-Manyes, S.1
Dougan, L.2
Fernandez, J.M.3
-
17
-
-
0037162798
-
Water and ice
-
Soper AK (2002) Water and ice. Science 297:1288-1289.
-
(2002)
Science
, vol.297
, pp. 1288-1289
-
-
Soper, A.K.1
-
18
-
-
0033151955
-
Steered molecular dynamics simulations of force-induced protein domain unfolding
-
DOI 10.1002/(SICI)1097-0134(19990601)35:4<453::AID-PROT9>3.0.CO;2-M
-
Lu H, Schulten K (1999) Steered molecular dynamics simulations of force-induced protein domain unfolding. Proteins 35:453-463. (Pubitemid 29264842)
-
(1999)
Proteins: Structure, Function and Genetics
, vol.35
, Issue.4
, pp. 453-463
-
-
Lu, H.1
Schulten, K.2
-
19
-
-
0033917135
-
The key event in force-induced unfolding of titin's immunoglobulin domains
-
Lu H, Schulten K (2000) The key event in force-induced unfolding of titin's immunoglobulin domains. Biophys J 79:51-65. (Pubitemid 30436727)
-
(2000)
Biophysical Journal
, vol.79
, Issue.1
, pp. 51-65
-
-
Lu, H.1
Schulten, K.2
-
20
-
-
0031848099
-
Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation
-
Lu H, Isralewitz B, Krammer A, Vogel V, Schulten K (1998) Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation. Biophys J 75:662-671. (Pubitemid 28357508)
-
(1998)
Biophysical Journal
, vol.75
, Issue.2
, pp. 662-671
-
-
Lu, H.1
Isralewitz, B.2
Krammer, A.3
Vogel, V.4
Schulten, K.5
-
21
-
-
78650617915
-
Water's role in the force-induced unfolding of ubiquitin
-
Li JY, Fernandez JM, Berne BJ (2010) Water's role in the force-induced unfolding of ubiquitin. Proc Natl Acad Sci USA 107:19284-19289.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 19284-19289
-
-
Li, J.Y.1
Fernandez, J.M.2
Berne, B.J.3
-
22
-
-
0020336190
-
Living with water stress: Evolution of osmolyte systems
-
Yancey PH, Clark ME, Hand SC, Bowlus RD, Somero GN (1982) Living with water-stress -Evolution of osmolyte systems. Science 217:1214-1222. (Pubitemid 13283134)
-
(1982)
Science
, vol.217
, Issue.4566
, pp. 1214-1222
-
-
Yancey, P.H.1
Clark, M.E.2
Hand, S.C.3
Bowlus, R.D.4
Somero, G.N.5
-
23
-
-
0030010453
-
Relative stability of hydrogen and deuterium bonds
-
DOI 10.1021/ja9530376
-
Scheiner S, Cuma M (1996) Relative stability of hydrogen and deuterium bonds. J Am Chem Soc 118:1511-1521. (Pubitemid 26080422)
-
(1996)
Journal of the American Chemical Society
, vol.118
, Issue.6
, pp. 1511-1521
-
-
Scheiner, S.1
Cuma, M.2
-
24
-
-
0033616713
-
Mechanical and chemical unfolding of a single protein: A comparison
-
DOI 10.1073/pnas.96.7.3694
-
Carrion-Vazquez M, et al. (1999) Mechanical and chemical unfolding of a single protein: A comparison. Proc Natl Acad Sci USA 96:3694-3699. (Pubitemid 29168972)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.7
, pp. 3694-3699
-
-
Carrion-Vazquez, M.1
Oberhauser, A.F.2
Fowler, S.B.3
Marszalek, P.E.4
Broedel, S.E.5
Clarke, J.6
Fernandez, J.M.7
-
25
-
-
0037194788
-
Reverse engineering of the giant muscle protein titin
-
Li HB, et al. (2002) Reverse engineering of the giant muscle protein titin. Nature 418:998-1002.
-
(2002)
Nature
, vol.418
, pp. 998-1002
-
-
Li, H.B.1
-
26
-
-
34848909232
-
Force-clamp spectroscopy of single-protein monomers reveals the individual unfolding and folding pathways of i27 and ubiquitin
-
DOI 10.1529/biophysj.107.104422
-
Garcia-Manyes S, Brujic J, Fernandez JM (2007) Force-clamp spectroscopy of single protein monomers reveals the individual unfolding and folding pathways of 127 and ubiquitin. Biophys J 93:2436-2446. (Pubitemid 47511144)
-
(2007)
Biophysical Journal
, vol.93
, Issue.7
, pp. 2436-2446
-
-
Garcia-Manyes, S.1
Brujic, J.2
Badilla, C.L.3
Fernandez, J.M.4
-
28
-
-
67649774600
-
Direct observation of an ensemble of stable collapsed states in the mechanical folding of ubiquitin
-
Garcia-Manyes S, Dougan L, Badilla CL, Brujic J, Fernandez JM (2009) Direct observation of an ensemble of stable collapsed states in the mechanical folding of ubiquitin. Proc Natl Acad Sci USAmerica 106:10534-10539.
-
(2009)
Proc Natl Acad Sci USAmerica
, vol.106
, pp. 10534-10539
-
-
Garcia-Manyes, S.1
Dougan, L.2
Badilla, C.L.3
Brujic, J.4
Fernandez, J.M.5
-
29
-
-
0025843589
-
Volumetric properties of polyols (ethylene-glycol, glycerol, mesoerythritol, xylitol and mannitol) in relation to their membrane-permeability - Group additivity and estimation of the maximum radius of their molecules
-
Kiyosawa K (1991) Volumetric properties of polyols (ethylene-glycol, glycerol, mesoerythritol, xylitol and mannitol) in relation to their membrane-permeability - Group additivity and estimation of the maximum radius of their molecules. Biochim Biophys Acta 1064:251-255.
-
(1991)
Biochim Biophys Acta
, vol.1064
, pp. 251-255
-
-
Kiyosawa, K.1
-
30
-
-
0028862864
-
The peptide backbone plays a dominant role in protein stabilization by naturally-occurring osmolytes
-
Liu YF, Bolen DW (1995) The peptide backbone plays a dominant role in protein stabilization by naturally-occurring osmolytes. Biochemistry 34:12884-12891.
-
(1995)
Biochemistry
, vol.34
, pp. 12884-12891
-
-
Liu, Y.F.1
Bolen, D.W.2
-
31
-
-
33645765218
-
Single-molecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin
-
DOI 10.1038/nphys269, PII N269
-
Brujic J, Hermans RI, Walther KA, Fernandez JM (2006) Single-molecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin. Nature Phys 2:282-286. (Pubitemid 43553651)
-
(2006)
Nature Physics
, vol.2
, Issue.4
, pp. 282-286
-
-
Brujic, J.1
Hermans, R.I.Z.2
Walther, K.A.3
Fernandez, J.M.4
-
32
-
-
34147138772
-
Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy
-
DOI 10.1529/biophysj.106.099481
-
Brujic J, Hermans RIZ, Garcia-Manyes S, Walther KA, Fernandez JM (2007) Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy. Biophys J 92:2896-2903. (Pubitemid 46557863)
-
(2007)
Biophysical Journal
, vol.92
, Issue.8
, pp. 2896-2903
-
-
Brujic, J.1
Hermans, R.I.Z.2
Garcia-Manyes, S.3
Walther, K.A.4
Fernandez, J.M.5
-
33
-
-
0003242435
-
The Jackknife, the Bootstrap, and other Resampling Plans
-
Society of Industrial and Applied Mathematics, Philadelphia, PA
-
Efron B (1982) The Jackknife, the Bootstrap, and other Resampling Plans, , CBMS-NSF Monographs (Society of Industrial and Applied Mathematics, Philadelphia, PA), Vol 38.
-
(1982)
CBMS-NSF Monographs
, vol.38
-
-
Efron, B.1
-
34
-
-
35948932620
-
Probing the chemistry of thioredoxin catalysis with force
-
DOI 10.1038/nature06231, PII NATURE06231
-
Wiita AP, et al. (2007) Probing the chemistry of thioredoxin catalysis with force. Nature 450:124-127. (Pubitemid 350070567)
-
(2007)
Nature
, vol.450
, Issue.7166
, pp. 124-127
-
-
Wiita, A.P.1
Perez-Jimenez, R.2
Walther, K.A.3
Grater, F.4
Berne, B.J.5
Holmgren, A.6
Sanchez-Ruiz, J.M.7
Fernandez, J.M.8
-
35
-
-
56749155582
-
The effects of macromolecular crowding on the mechanical stability of protein molecules
-
Yuan JM, et al. (2008) The effects of macromolecular crowding on the mechanical stability of protein molecules. Protein Sci 17:2156-2166.
-
(2008)
Protein Sci
, vol.17
, pp. 2156-2166
-
-
Yuan, J.M.1
-
36
-
-
36348998132
-
How do chemical denaturants affect the mechanical folding and unfolding of proteins?
-
Cao Y, Li H (2008) How do chemical denaturants affect the mechanical folding and unfolding of proteins? J Mol Biol 375:316-324.
-
(2008)
J Mol Biol
, vol.375
, pp. 316-324
-
-
Cao, Y.1
Li, H.2
-
37
-
-
78649677842
-
Naturally occurring osmolytes modulate the nanomechanical properties of polycystic kidney disease domains
-
Ma L, Xu MX, Oberhauser AF (2010) Naturally occurring osmolytes modulate the nanomechanical properties of polycystic kidney disease domains. J Biol Chem 285:38438-38443.
-
(2010)
J Biol Chem
, vol.285
, pp. 38438-38443
-
-
Ma, L.1
Xu, M.X.2
Oberhauser, A.F.3
-
38
-
-
0035818481
-
Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations
-
DOI 10.1073/pnas.241378398
-
Li L, Shakhnovich EI (2001) Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations. Proc Natl Acad Sci USA 98:13014-13018. (Pubitemid 33051309)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.23
, pp. 13014-13018
-
-
Li, L.1
Shakhnovich, E.I.2
-
39
-
-
55949131241
-
Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding
-
Hua L, Zhou RH, Thirumalai D, Berne BJ (2008) Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding. Proc Natl Acad Sci USA 105:16928-16933.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 16928-16933
-
-
Hua, L.1
Zhou, R.H.2
Thirumalai, D.3
Berne, B.J.4
-
41
-
-
78650617915
-
Water's role in the force-induced unfolding of ubiquitin
-
Berne BJ, Li JY, Fernandez JM (2010) Water's role in the force-induced unfolding of ubiquitin. Proc Natl Acad Sci USA 107:19284-19289.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 19284-19289
-
-
Berne, B.J.1
Li, J.Y.2
Fernandez, J.M.3
-
42
-
-
76649112096
-
Computational and single-molecule force studies of a macro domain protein reveal a key molecular determinant for mechanical stability
-
Guan ZB, Guzman DL, Randall A, Baldi P (2010) Computational and single-molecule force studies of a macro domain protein reveal a key molecular determinant for mechanical stability. Proc Natl Acad Sci USA 107:1989-1994.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 1989-1994
-
-
Guan, Z.B.1
Guzman, D.L.2
Randall, A.3
Baldi, P.4
-
44
-
-
0035861454
-
Water permeation across biological membranes: Mechanism and dynamics of aquaporin-1 and GlpF
-
de Groot BL, Grubmuller H (2001) Water permeation across biological membranes: Mechanism and dynamics of aquaporin-1 and GlpF. Science 294:2353-2357.
-
(2001)
Science
, vol.294
, pp. 2353-2357
-
-
De Groot, B.L.1
Grubmuller, H.2
-
45
-
-
23044496908
-
What makes an aquaporin a glycerol channel? A comparative study of AqpZ and GlpF
-
DOI 10.1016/j.str.2005.05.005, PII S0969212605002054
-
Wang Y, Schulten K, Tajkhorshid E (2005) What makes an aquaporin a glycerol channel? A comparative study of AqpZ and GlpF. Structure 13:1107-1118. (Pubitemid 41111479)
-
(2005)
Structure
, vol.13
, Issue.8
, pp. 1107-1118
-
-
Wang, Y.1
Schulten, K.2
Tajkhorshid, E.3
-
46
-
-
0037073207
-
Aqueous phase separation in giant vesicles
-
DOI 10.1021/ja028157+
-
Helfrich MR, Mangeney-Slavin LK, Long MS, Djoko KY, Keating CD (2002) Aqueous phase separation in giant vesicles. J Am Chem Soc 124:13374-13375. (Pubitemid 35285901)
-
(2002)
Journal of the American Chemical Society
, vol.124
, Issue.45
, pp. 13374-13375
-
-
Helfrich, M.R.1
Mangeney-Slavin, L.K.2
Long, M.S.3
Djoko, K.Y.4
Keating, C.D.5
|