Primary thermosensory events in cells

Advances in Experimental Medicine and Biology

Volumn 704, Issue , 2011, Pages 451-468

  Digel, Ilya ^a  

^a AACHEN UNIVERSITY OF APPLIED SCIENCES   (Germany)

Author keywords

molecular dynamics; protein denaturation; Thermosensation; thermotropic reactions; TRP channels

Indexed keywords

DNA; MEMBRANE LIPID; RNA; TRANSIENT RECEPTOR POTENTIAL CHANNEL; PROTEIN;

BIOCHEMISTRY; BIOPHYSICS; CELL FUNCTION; CELL MEMBRANE FLUIDITY; CELL METABOLISM; CELL STRUCTURE; COLD SHOCK RESPONSE; COMPLEX FORMATION; CONFERENCE PAPER; CONFORMATIONAL TRANSITION; HEAT SHOCK RESPONSE; HUMAN; MECHANOTRANSDUCTION; MOLECULAR DYNAMICS; MOLECULAR MECHANICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN POLYMERIZATION; PROTEIN STABILITY; PROTEIN STRUCTURE; REGULATORY MECHANISM; RIBOSWITCH; SIGNAL TRANSDUCTION; TEMPERATURE SENSE; THERMODYNAMICS; ANIMAL; MEMBRANE FLUIDITY; PHYSIOLOGY; REVIEW; THERMOREGULATION;

ANIMALS; BIOPHYSICS; BODY TEMPERATURE REGULATION; DNA; MEMBRANE FLUIDITY; PROTEINS; RNA;

EID: 79959811212     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-94-007-0265-3_25     Document Type: Conference Paper

References (92)

1. Yamanaka K, Fang L, Inouye M (1998) The CspA family in Escherichia coli: Multiple gene duplication for stress adaptation. Mol Microbiol 27:247-255
2. Narberhaus F, Waldminghaus T, Chowdhury S (2006) RNA thermometers. FEMS Microbiol Rev 30:3-16
3. Hurme R, Rhen M (1998) Temperature sensing in bacterial gene regulation-what it all boils down to. Mol Microbiol 30:1-6
4. Ramos L (2001) Scaling with temperature and concentration of the nonlinear rheology of a soft hexagonal phase. Phys Rev E Stat Nonlin Soft Matter Phys 64:061502
5. Lemaux PG, Herendeen SL, Bloch PL, Neidhardt FC (1978) Transient rates of synthesis of individual polypeptides in E. coli following temperature shifts. Cell 13:427-434
6. Hazel JR (1995) Thermal adaptation in biological membranes: Is homeoviscous adaptation the explanation? Annu Rev Physiol 57:19-42
7. Al Fageeh MB, Smales CM (2006) Control and regulation of the cellular responses to cold shock: The responses in yeast and mammalian systems. Biochem J 397:247-259
8. Maurelli AT, Sansonetti PJ (1988) Identification of a chromosomal gene controlling temperature-regulated expression of Shigella virulence. Proc Natl Acad Sci USA 85: 2820-2824
9. Straley SC, Perry RD (1995) Environmental modulation of gene expression and pathogenesis in Yersinia. Trends Microbiol 3:310-317
10. Collins AC, Smolen A, Wayman AL, Marks MJ (1984) Ethanol and temperature effects on five membrane bound enzymes. Alcohol 1:237-246
11. Ferrer-Montiel A, Garcia-Martinez C, Morenilla-Palao C, Garcia-Sanz N, Fernandez-Carvajal A, Fernandez-Ballester G, Planells-Cases R (2004) Molecular architecture of the vanilloid receptor. Insights for drug design. Eur J Biochem 271:1820-1826
12. Ginsberg L, Gilbert DL, Gershfeld NL (1991) Membrane bilayer assembly in neural tissue of rat and squid as a critical phenomenon: Influence of temperature and membrane proteins. J Membr Biol 119:65-73
13. Mandal M, Breaker RR (2004) Gene regulation by riboswitches. Nat Rev Mol Cell Biol 5:451-463
14. Oppenheimer CH, Drost-Hansen W (1960) A relationship between multiple temperature optima for biological systems and the properties of water. J Bacteriol 80:21-24
15. Drost-Hansen W (2001) Temperature effects on cell-functioning-a critical role for vicinal water. Cell Mol Biol (Noisy-le-grand) 47:865-883
16. Vigh L, Maresca B, Harwood JL (1998) Does the membrane's physical state control the expression of heat shock and other genes? Trends Biochem Sci 23:369-374
17. Aguilar PS, Cronan JE Jr., de Mendoza D (1998) A Bacillus subtilis gene induced by cold shock encodes a membrane phospholipid desaturase. J Bacteriol 180:2194-2200
18. Aguilar PS, Hernandez-Arriaga AM, Cybulski LE, Erazo AC, de Mendoza D (2001) Molecular basis of thermosensing: A two-component signal transduction thermometer in Bacillus subtilis. EMBO J 20:1681-1691
19. Suzuki T, Nakayama T, Kurihara T, Nishino T, Esaki N (2001) Cold-active lipolytic activity of psychrotrophic Acinetobacter sp. strain no. 6. J Biosci Bioeng 92:144-148
20. Dutta R, Qin L, Inouye M (1999) Histidine kinases: Diversity of domain organization. Mol Microbiol 34:633-640
21. Andersen J, Forst SA, Zhao K, Inouye M, Delihas N (1989) The function of micF RNA. micF RNA is a major factor in the thermal regulation of OmpF protein in Escherichia coli. J Biol Chem 264:17961-17970
22. Lease RA, Belfort M (2000) A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures. Proc Natl Acad Sci USA 97: 9919-9924
23. Mandal M, Breaker RR (2004) Adenine riboswitches and gene activation by disruption of a transcription terminator. Nat Struct Mol Biol 11:29-35
24. Winkler WC, Breaker RR (2005) Regulation of bacterial gene expression by riboswitches. Annu Rev Microbiol 59:487-517
25. Brunel C, Romby P, Sacerdot C, de Smit M, Graffe M, Dondon J, van Duin J, Ehresmann B, Ehresmann C, Springer M (1995) Stabilised secondary structure at a ribosomal binding site enhances translational repression in E. coli. J Mol Biol 253:277-290
26. Kaempfer R (2003) RNA sensors: Novel regulators of gene expression. EMBO Rep 4: 1043-1047
27. Tucker BJ, Breaker RR (2005) Riboswitches as versatile gene control elements. Curr Opin Struct Biol 15:342-348
28. Johansson J, Mandin P, Renzoni A, Chiaruttini C, Springer M, Cossart P (2002) An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes. Cell 110:551-561
29. Morita MT, Tanaka Y, Kodama TS, Kyogoku Y, Yanagi H, Yura T (1999) Translational induction of heat shock transcription factor sigma32: Evidence for a built-in RNA thermosensor. Genes Dev 13:655-665
30. Nocker A, Hausherr T, Balsiger S, Krstulovic NP, Hennecke H, Narberhaus F (2001) A mRNA-based thermosensor controls expression of rhizobial heat shock genes. Nucleic Acids Res 29:4800-4807
31. Yamanaka K (1999) Cold shock response in Escherichia coli. J Mol Microbiol Biotechnol 1:193-202
32. Dorman CJ (1996) Flexible response: DNA supercoiling, transcription and bacterial adaptation to environmental stress. Trends Microbiol 4:214-216
33. Dorman CJ, Hinton JC, Free A (1999) Domain organization and oligomerization among HNS- like nucleoid-associated proteins in bacteria. Trends Microbiol 7:124-128
34. Dorman CJ (1991) DNA supercoiling and environmental regulation of gene expression in pathogenic bacteria. Infect Immun 59:745-749
35. Grau R, Gardiol D, Glikin GC, de Mendoza D (1994) DNA supercoiling and thermal regulation of unsaturated fatty acid synthesis in Bacillus subtilis. Mol Microbiol 11:933-941
36. Lupski JR, Projan SJ, Ozaki LS, Godson GN (1986) A temperature-dependent pBR322 copy number mutant resulting from a Tn5 position effect. Proc Natl Acad Sci USA 83: 7381-7385
37. Wereszczynski J, Andricioaei I (2010) Conformational and solvent entropy contributions to the thermal response of nucleic acid-based nanothermometers. J Phys Chem B 114:2076-2082
38. Kumar SV, Wigge PA (2010) H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis. Cell 140:136-147
39. Williams RM, Rimsky S (1997) Molecular aspects of the E. coli nucleoid protein, H-NS: A central controller of gene regulatory networks. FEMS Microbiol Lett 156:175-185
40. Drlica K (1992) Control of bacterial DNA supercoiling. Mol Microbiol 6:425-433
41. Tse-Dinh YC, Qi H, Menzel R (1997) DNA supercoiling and bacterial adaptation: Thermotolerance and thermoresistance. Trends Microbiol 5:323-326
42. Carmel-Harel O, Storz G (2000) Roles of the glutathione- and thioredoxin-dependent reduction systems in the Escherichia coli and saccharomyces cerevisiae responses to oxidative stress. Annu Rev Microbiol 54:439-461
43. Turner L, Samuel AD, Stern AS, Berg HC (1999) Temperature dependence of switching of the bacterial flagellar motor by the protein CheY(13DK106YW). Biophys J 77:597-603
44. Alon U, Camarena L, Surette MG, Arcas B, Liu Y, Leibler S, Stock JB (1998) Response regulator output in bacterial chemotaxis. EMBO J 17:4238-4248
45. Monod J, Wyman J, Changeux JP (1965) On the nature of allosteric transitions: A plausible model. J Mol Biol 12:88-118
46. Scharf BE, Fahrner KA, Turner L, Berg HC (1998) Control of direction of flagellar rotation in bacterial chemotaxis. Proc Natl Acad Sci USA 95:201-206
47. Nara T, Lee L, Imae Y (1991) Thermosensing ability of Trg and Tap chemoreceptors in Escherichia coli. J Bacteriol 173:1120-1124
48. Eriksson S, Hurme R, Rhen M (2002) Low-temperature sensors in bacteria. Philos Trans R Soc Lond B Biol Sci 357:887-893
49. Harteneck C, Plant TD, Schultz G (2000) From worm to man: Three subfamilies of TRP channels. Trends Neurosci 23:159-166
50. Montell C (2005) The TRP superfamily of cation channels. Sci STKE 2005:re3
51. Yang XR, Lin MJ, Sham JS (2010) Physiological functions of transient receptor potential channels in pulmonary arterial smooth muscle cells. Adv Exp Med Biol 661:109-122
52. Caterina MJ (2007) Transient receptor potential ion channels as participants in thermosensation and thermoregulation. Am J Physiol Regul Integr Comp Physiol 292:R64-R76
53. Moran MM, Xu H, Clapham DE (2004) TRP ion channels in the nervous system. Curr Opin Neurobiol 14:362-369
54. Peier AM, Reeve AJ, Andersson DA, Moqrich A, Earley TJ, Hergarden AC, Story GM, Colley S, Hogenesch JB, McIntyre P, Bevan S, Patapoutian A (2002) A heat-sensitive TRP channel expressed in keratinocytes. Science 296:2046-2049
55. McKemy DD (2005) How cold is it? TRPM8 and TRPA1 in the molecular logic of cold sensation. Mol Pain 1:16
56. Story GM, Peier AM, Reeve AJ, Eid SR, Mosbacher J, Hricik TR, Earley TJ, Hergarden AC, Andersson DA, Hwang SW, McIntyre P, Jegla T, Bevan S, Patapoutian A (2003) ANKTM1, a TRP-like channel expressed in nociceptive neurons, is activated by cold temperatures. Cell 112:819-829
57. Liu B, Hui K, Qin F (2003) Thermodynamics of heat activation of single capsaicin ion channels VR1. Biophys J 85:2988-3006
58. Brauchi S, Orio P, Latorre R (2004) Clues to understanding cold sensation: Thermodynamics and electrophysiological analysis of the cold receptor TRPM8. Proc Natl Acad Sci USA 101:15494-15499
59. Brauchi S, Orta G, Salazar M, Rosenmann E, Latorre R (2006) A hot-sensing cold receptor: C-terminal domain determines thermosensation in transient receptor potential channels. J Neurosci 26:4835-4840
60. Huang HW (1976) Allosteric linkage and phase transition. Physiol Chem Phys 8:143-150
61. DeLucas LJ, Moore KM, LongMM(1999) Protein crystal growth and the International Space Station. Gravit Space Biol Bull 12:39-45
62. Leeson DT, Gai F, Rodriguez HM, Gregoret LM, Dyer RB (2000) Protein folding and unfolding on a complex energy landscape. Proc Natl Acad Sci USA 97:2527-2532
63. Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN (2008) The unfoldomics decade: An update on intrinsically disordered proteins. BMC Genomics 9(Suppl 2):S1
64. Uversky VN (2010) The mysterious unfoldome: Structureless, underappreciated, yet vital part of any given proteome. J Biomed Biotechnol 2010:568068
65. Artmann GM, Kelemen C, Porst D, Buldt G, Chien S (1998) Temperature transitions of protein properties in human red blood cells. Biophys J 75:3179-3183
66. Ip SH, Ackers GK (1977) Thermodynamic studies on subunit assembly in human hemoglobin. Temperature dependence of the dimer-tetramer association constants for oxygenated and unliganded hemoglobins. J Biol Chem 252:82-87
67. Valdes R Jr., Ackers GK (1977) Thermodynamic studies on subunit assembly in human hemoglobin. Calorimetric measurements on the reconstitution of oxyhemoglobin from isolated chains. J Biol Chem 252:88-91
68. Bowler BE (2007) Thermodynamics of protein denatured states. Mol Biosyst 3:88-99
69. Levy Y, Onuchic JN (2006) Water mediation in protein folding and molecular recognition. Annu Rev Biophys Biomol Struct 35:389-415
70. Nilius B, Talavera K, Owsianik G, Prenen J, Droogmans G, Voets T (2005) Gating of TRP channels: A voltage connection? J Physiol 567:35-44
71. Nilius B, Owsianik G, Voets T, Peters JA (2007) Transient receptor potential cation channels in disease. Physiol Rev 87:165-217
72. Rodger A, Marrington R, Geeves MA, Hicks M de Alwis, L, Halsall, DJ, Dafforn, TR (2006) Looking at long molecules in solution: What happens when they are subjected to Couette flow? Phys Chem Phys 8:3161-3171
73. Urry DW (1988) Entropic elastic processes in protein mechanisms. I. Elastic structure due to an inverse temperature transition and elasticity due to internal chain dynamics. J Protein Chem 7:1-34
74. Artmann GM, Digel I, Zerlin KF, Maggakis-Kelemen C, Linder P, Porst D, Kayser P, Stadler AM, Dikta G, Temiz AA (2009) Hemoglobin senses body temperature. Eur Biophys J 38: 589-600
75. Smith JC, Merzel F, Bondar AN, Tournier A, Fischer S (2004) Structure, dynamics and reactions of protein hydration water. Philos Trans R Soc Lond B Biol Sci 359:1181-1189
76. Stadler AM, Digel I, Embs JP, Unruh T, Tehei M, Zaccai G, Buldt G, Artmann GM (2009) From powder to solution: Hydration dependence of human hemoglobin dynamics correlated to body temperature. Biophys J 96:5073-5081
77. Zaccai G (2004) The effect of water on protein dynamics. Philos Trans R Soc Lond B Biol Sci 359:1269-1275
78. Doster W (2010) The protein-solvent glass transition. Biochim Biophys Acta 1804:3-14
79. Muthuselvi L, Dhathathreyan A (2009) Understanding dynamics of myoglobin in heterogeneous aqueous environments using coupled water fractions. Adv Colloid Interface Sci 150:55-62
80. Matveev VV (2005) Protoreaction of protoplasm. Cell Mol Biol (Noisy-le-grand) 51:715-723
81. Matveev VV, Wheatley DN (2005) "Fathers" and "sons" of theories in cell physiology: The membrane theory. Cell Mol Biol (Noisy-le-grand) 51:797-801
82. Kim SH, Wang W, Kim KK (2002) Dynamic and clustering model of bacterial chemotaxis receptors: Structural basis for signaling and high sensitivity. Proc Natl Acad Sci USA 99:11611-11615
83. Sourjik V (2004) Receptor clustering and signal processing in E. coli chemotaxis. Trends Microbiol 12:569-576
84. Hamill OP,Martinac B (2001) Molecular basis of mechanotransduction in living cells. Physiol Rev 81:685-740
85. Sachs F, Morris CE (1998) Mechanosensitive ion channels in nonspecialized cells. Rev Physiol Biochem Pharmacol 132:1-77
86. Kedei N, Szabo T, Lile JD, Treanor JJ, Olah Z, Iadarola MJ, Blumberg PM (2001) Analysis of the native quaternary structure of vanilloid receptor 1. J Biol Chem 276:28613-28619
87. McKemy DD (2007) Temperature sensing across species. Pflugers Arch 454:777-791
88. Rohacs T, Nilius B (2007) Regulation of transient receptor potential (TRP) channels by phosphoinositides. Pflugers Arch 455:157-168
89. Stockwell BR (2000) Frontiers in chemical genetics. Trends Biotechnol 18:449-455
90. Artmann GM, Burns L, Canaves JM, Temiz-Artmann A, Schmid-Schonbein GW, Chien S, Maggakis-Kelemen C (2004) Circular dichroism spectra of human hemoglobin reveal a reversible structural transition at body temperature. Eur Biophys J 33:490-496
91. Digel I, Maggakis-Kelemen C, Zerlin KF, Linder P, Kasischke N, Kayser P, Porst D, Temiz AA, Artmann GM (2006) Body temperature-related structural transitions of monotremal and human hemoglobin. Biophys J 91:3014-3021
92. Zerlin KF, Kasischke N, Digel I, Maggakis-Kelemen C, Temiz AA, Porst D, Kayser P, Linder P, Artmann GM (2007) Structural transition temperature of hemoglobins correlates with species' body temperature. Eur Biophys J 37:1-10