Histidine kinases: Diversity of domain organization

Molecular Microbiology

Volumn 34, Issue 4, 1999, Pages 633-640

  Dutta, Rinku ^a   Qin, Ling ^a   Inouye, Masayori ^a  

^a RUTGERS ROBERT WOOD JOHNSON MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; PROTEIN HISTIDINE KINASE; PROTEIN KINASE; UNCLASSIFIED DRUG;

ENZYME ACTIVE SITE; ENZYME LOCALIZATION; ENZYME REGULATION; ENZYME STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; REVIEW; SIGNAL TRANSDUCTION;

PROKARYOTA;

EID: 0032730205     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1999.01646.x     Document Type: Review

References (45)

1. Appleby, J.L., Parkinson, J.S., and Bourret, R.B. (1996) Signal transduction via the multi-step phosphorelay: Not necessarily a road less traveled. Cell 86: 845-848.
2. Ban, C., and Yang, W. (1998) Crystal structure and ATPase activity of MutL: Implications for DNA repair and mutagenesis. Cell 95: 541-552.
3. Berg, H.C., and Turner, L. (1995) Cells of Escherichia coli swim either end forward. Proc Natl Acad Sci USA 92: 477-479.
4. Bilwes, A.M., Alex, L.A., Crane, B.R., and Simon, M.I. (1999) Structure of CheA, a signal-transducing histidine kinase. Cell 96: 131-141.
5. Falke, J.J., Bass, R.B., Butler, S.L., Chervitz, S.A., and Danielson, M.A. (1997) The two-component signaling pathway of bacterial chemotaxis: A molecular view of signal transduction by receptor kinases, and adaptation enzymes. Annu Rev Cell Dev Biol 13: 457-512.
6. Hoch, J.A., and Silhavy, T.J. (eds). (1995) Two-Component Signal Transduction. Washington, DC: American Society for Microbiology Press.
7. Hsing, W., Russo, F.D., Bernd, K.K., and Silhavy, T. (1998) Mutations that alter the kinase and phospatase activities of the two-component sensor EnvZ. J Bacteriol 180: 4538-4546.
8. Jackson, A.P., and Maxwell, A. (1993) Identifying the catalytic residue of the ATPase reaction of DNA gyrase. Proc Natl Acad Sci USA 90: 11232-11236.
9. Jin, T., and Inouye, M. (1993) Ligand binding to the receptor domain regulates the ratio of kinase to phosphatase activities of the signaling domain of the hybrid Escherichia coli transmemebrane receptor, Taz1. J Mol Biol 232: 484-492.
10. Kato, M., Mizuno, T., Shimizu, T., and Hakoshima, T. (1997) Insights into multistep phosphorelay from the crystal structure of the C-terminal HPt domain of ArcB. Cell 88: 717-723.
11. Kofoid, E.C., and Parkinson, J.S. (1988) Transmitter and receiver modules in bacterial signaling proteins. Proc Natl Acad Sci USA 85: 4981-4985.
12. Kramer, G., and Weiss, V. (1999) Functional dissection of the transmitter module of the histidine kinase NtrB in Escherichia coli. Proc Natl Acad Sci USA 96: 604-609.
13. Levit, M., Liu, I., Surette, M.G., and Stock, J.B. (1996) Active site interference and asymmetric activation in the chemotaxis protein histidine kinase CheA. J Biol Chem 271: 32057-32063.
14. Levit, M., Liu, Y., and Stock, J.B. (1999) Mechanism of CheA protein kinase activation in receptor signaling complexes. Biochemistry 38: 6651-6658.
15. Li, J., Swanson, R.V., Simon, M.I., and Weis, R.M. (1995) The response regulators CheB and CheY exhibit competitive binding to the kinase CheA. Biochemistry 34: 14626-14636.
16. Liu, Y., Levit, M., Lurz, R., Surette, M., and Stock, J. (1997) Receptor-mediated protein kinase activation and the mechanism of transmembrane signaling in bacterial chemotaxis. EMBO J 16: 7231-7240.
17. Loomis, W.F., Shaulsky, G., and Wang, N. (1997) Histidine kinases in signal transduction pathways of eukaryotes. J Cell Sci 110: 1141-1145.
18. Maddock, J.R., and Shapiro, L. (1993) Polar-location of the chemoreceptor complex in the Escherichia coli cell. Science 259: 1717-1723.
19. McEvoy, M.M., Hausrath, A.C., Randolph, G.B., Remington, S.J., and Dahlquist, F.W. (1998) Two binding modes reveal flexibility in kinase/response regulator interactions in the bacterial chemotaxis pathway. Proc Natl Acad Sci USA 95: 7333-7338.
20. Mizuno, T. (1997) Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli. DNA Res 4: 161-168.
21. Mizuno, T., Kaneko, T., and Tabata, S. (1996) Compilation of all genes encoding bacterial two-component signal transducers in the genome of the cyanobacterium, Synechocystis sp. strain PCC 6803. DNA Res 3: 407-414.
22. Najafi, S.M., Willis, A.C., and Yudkin, M.D. (1995) Site of phosphorylation of SpoIIAA, the anti-anti-sigma factor for sporulation-specific sigma f of Bacillus subtilis. J Bacteriol 177: 2912-2913.
23. Ninfa, E.G., Atkinson, M.R., Kamberov, E.S., and Ninfa, A.J. (1993) Mechanism of autophosphorylation of Escherichia coli nitrogen regulator II (NRII or NtrB): Trans-autophosphorylation between subunits. J Bacteriol 175: 7024-7032.
24. Orengo, C.A., Jones, D.T., and Thornton, J.M. (1994) Protein superfamilies and domain superfolds. Nature 372: 631-634.
25. Ota, I.M., and Varshavsky, A. (1993) A yeast protein similar to bacterial two-component regulators. Science 262: 566-569.
26. Park, H., Saha, S.K., and Inouye, M. (1998) Two-domain reconstitution of a functional protein histidine kinase, Proc Natl Acad Sci USA 95: 6728-6732.
27. Parkinson, J.S. (1993) Signal transduction schemes of bacteria. Cell 73: 857-871.
28. Parldnson, J.S Parkinson, J,S., and Kofoid, E.C. (1992) Communication modules in bacterial signaling proteins. Annu Rev Genet 26: 71-112.
29. Perego, M., and Hoch, J.A. (1996) Protein aspartate phosphatases control the output of two-component signal transduction systems. Trends Genet 12: 97-101.
30. Popov, K.M., Zhao, Y., Shimomura, Y., Kuntz, M.J., and Harris, R.A. (1992) Branched-chain alpha-ketoacid dehydrogenase kinase. Molecular cloning, expression, and sequence similarity with histidine protein kinases. J Biol Chem 267: 13127-13130.
31. Prodromou, C., Roe, S.M., O'Brien, R., Ladbury, J.E., Piper, P.W., and Pearl, L.H. (1997) Identification and structural characterization of the ATP/ADP-binding site in the Hsp90 molecular chaperone. Cell 90: 65-75.
32. Riese, D.J.I.I. and Stern, D.F. (1998) Specificity within the EGF family/ErbB receptor family signaling network. Bioessays 20: 41-48.
33. Ronson, C.W., Nixon, B.T., and Ausubel, F.M. (1987) Conserved domains in bacterial regulatory proteins that respond to environmental stimuli. Cell 49: 579-581.
34. Ryazanov, A.G., Pavur, K.S., and Dorovkov, M.V. (1999) Alpha-kinases: A new class of protein kinases with a novel catalytic domain. Curr Biol 9: R43-R45.
35. Swanson, R.V., Bourret, R.B., and Simon, M.I. (1993a) Intermolecular complementation of the kinase activity of CheA. Mol Microbiol 8: 435-441.
36. Swanson, R.V., Schuster, S.C., and Simon, M.I. (1993b) Expression of CheA fragments which define domains encoding kinase, phosphotransfer, and CheY binding activities. Biochemistry 32: 7623-7629.
37. Swanson, R.V., Alex, L.A., and Simon, M.I. (1994) Histidine and aspartate phosphorylation: Two-component systems and the limits of homology. Trends Biochem Sci 19: 485-490.
38. Tanaka, T., Saha, S.K., Tomomori, C., Ishima, R., Liu, D., Tong, K.I., et al. (1998) NMR structure of the histidine kinase domain of the E. coli osmosensor EnvZ. Nature 396: 88-92.
39. Tomomori, C., Tanaka, T., Dutta, R., Park, H., Saha, S.K., Zhu, Y. et al. (1999) Solution structure of the homodimeric core domain of Escherichia coli histidine kinase EnvZ. Nat Struct Biol 6: 729-734.
40. Tsuzuki, M., Ishige, K., and Mizuno, T. (1995) Phosphotransfer circuity of the putative multi-signal transducer, ArcB, of Escherichia coli: In vitro studies with mutants. Mol Microbiol 18: 953-962.
41. Varughese, K.I., Madhusudan, Zhou, X.Z., Whiteley, J.M., and Hoch, J.A. (1998) Formation of a novel four-helix bundle and molecular recognition sites by dimerization of a response regulator phosphotransferase. Mol Cell 2: 485-493.
42. Wigley, D.B., Davies, G.J., Dodson, E.J., Maxwell, A., and Dodson, G. (1991) Crystal structure of an N-terminal fragment of the DNA gyrase B protein. Nature 351: 624-629.
43. Yang, Y., and Inouye, M. (1991) Intermolecular complementation between two defective mutant signal transducing receptors of Escherichia coli. Proc Natl Acad Sci USA 88:11057-11061.
44. Yang, Y., Park, H., and Inouye, M. (1993) Ligand binding induces an asymmetrical transmembrane signal through a receptor dimer. J Mol Biol 232: 493-498.
45. Zhou, H., Lowry, D.F., Swanson, R.V., Simon, M.I., and Dahlquist, F.W. (1995) NMR studies of the phosphotransfer domain of the histidine kinase CheA from Escherichia coli: Assignments, secondary structure, general fold and backbone dynamics. Biochemistry 34: 13858-13870.