Control of DNA replication by cyclin-dependent kinases in development

Results and Problems in Cell Differentiation

Volumn 53, Issue , 2011, Pages 201-217

  Fisher, Daniel ^a  

^a INSTITUT DE GÉNÉTIQUE MOLÉCULAIRE DE MONTPELLIER   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIN DEPENDENT KINASE;

ANIMAL; ARTICLE; CELL DIVISION; DNA REPLICATION; EMBRYO DEVELOPMENT; GENETICS; HUMAN; PHYSIOLOGY;

ANIMALS; CELL DIVISION; CYCLIN-DEPENDENT KINASES; DNA REPLICATION; EMBRYONIC DEVELOPMENT; HUMANS;

EID: 79959721745     PISSN: 00801844     EISSN: 18610412     Source Type: Book Series    
DOI: 10.1007/978-3-642-19065-0_10     Document Type: Article

References (82)

1. Ait-Si-Ali S et al (1998) Histone acetyltransferase activity of CBP is controlled by cycle-dependent kinases and oncoprotein E1A. Nature 396:184-186 (Pubitemid 28523622)
2. Alberio R, Johnson AD, Stick R, Campbell KH (2005) Differential nuclear remodeling of mammalian somatic cells by Xenopus laevis oocyte and egg cytoplasm. Exp Cell Res 307:131-141 (Pubitemid 40732739)
3. Aleem E, Kiyokawa H, Kaldis P (2005) Cdc2-cyclin E complexes regulate the G1/S phase transition. Nat Cell Biol 7:831-836 (Pubitemid 41079056)
4. Alexandrow MG, Hamlin JL (2005) Chromatin decondensation in S-phase involves recruitment of Cdk2 by Cdc45 and histone H1 phosphorylation. J Cell Biol 168:875-886 (Pubitemid 40397002)
5. Almouzni G, Mechali M (1988) Assembly of spaced chromatin promoted by DNA synthesis in extracts from Xenopus eggs. EMBO J 7:665-672
6. Almouzni G, Wolffe AP (1993) Replication-coupled chromatin assembly is required for the repression of basal transcription in vivo. Genes Dev 7:2033-2047 (Pubitemid 23312954)
7. Balestrini A, Cosentino C, Errico A, Garner E, Costanzo V (2010) GEMC1 is a TopBP1-interacting protein required for chromosomal DNA replication. Nat Cell Biol 12:484-491
8. Blow JJ, Laskey RA (1986) Initiation of DNA replication in nuclei and purified DNA by a cell-free extract of Xenopus eggs. Cell 47:577-587 (Pubitemid 17215347)
9. Blow JJ, Nurse P (1990) A cdc2-like protein is involved in the initiation of DNA replication in Xenopus egg extracts. Cell 62:855-862
10. Blow JJ, Gillespie PJ, Francis D, Jackson DA (2001) Replication origins in Xenopus egg extract Are 5-15 kilobases apart and are activated in clusters that fire at different times. J Cell Biol 152:15-25 (Pubitemid 32102433)
11. Brown DD, Littna E (1966) Synthesis and accumulation of DNA-like RNA during embryogenesis of Xenopus laevis. J Mol Biol 20:81-94
12. Byrne JA, Simonsson S, Western PS, Gurdon JB (2003) Nuclei of adult mammalian somatic cells are directly reprogrammed to oct-4 stem cell gene expression by amphibian oocytes. Curr Biol 13:1206-1213 (Pubitemid 36872943)
13. Cadoret JC, Meisch F, Hassan-Zadeh V, Luyten I, Guillet C, Duret L, Quesneville H, Prioleau MN (2008) Genome-wide studies highlight indirect links between human replication origins and gene regulation. Proc Natl Acad Sci USA 105:15837-15842
14. Dimitrov S, Wolffe AP (1996) Remodeling somatic nuclei in Xenopus laevis egg extracts: Molecular mechanisms for the selective release of histones H1 and H1(0) from chromatin and the acquisition of transcriptional competence. EMBO J 15:5897-5906 (Pubitemid 26375511)
15. Fang F, Newport JW (1991) Evidence that the G1-S and G2-M transitions are controlled by different cdc2 proteins in higher eukaryotes. Cell 66:731-742 (Pubitemid 121001707)
16. Fisher D, Mechali M (2003) Vertebrate HoxB gene expression requires DNA replication. Embo J 22:3737-3748 (Pubitemid 36898350)
17. Fisher DL, Nurse P (1996) A single fission yeast mitotic cyclin B p34cdc2 kinase promotes both S-phase and mitosis in the absence of G1 cyclins. Embo J 15:850-860
18. Forlani S, Bonnerot C, Capgras S, Nicolas JF (1998) Relief of a repressed gene expression state in the mouse 1-cell embryo requires DNA replication. Development 125:3153-3166 (Pubitemid 28434414)
19. Gambus A, Jones RC, Sanchez-Diaz A, Kanemaki M, van Deursen F, Edmondson RD, Labib K (2006) GINS maintains association of Cdc45 with MCM in replisome progression complexes at eukaryotic DNA replication forks. Nat Cell Biol 8:358-366
20. Geng Y et al (2003) Cyclin E ablation in the mouse. Cell 114:431-443 (Pubitemid 37100992)
21. Geng Y et al (2007) Kinase-independent function of cyclin E. Mol Cell 25:127-139 (Pubitemid 46049064)
22. Gladden AB, Diehl JA (2003) The cyclin D1-dependent kinase associates with the pre-replication complex and modulates RB.MCM7 binding. J Biol Chem 278:9754-9760 (Pubitemid 36800474)
23. Goisset C, Boucaut JC, Shi DL (1998) Identification and developmental expression of cyclindependent kinase 4 gene in Xenopus laevis. Mech Dev 70:197-200 (Pubitemid 28116494)
24. Goldman MA, Holmquist GP, Gray MC, Caston LA, Nag A (1984) Replication timing of genes and middle repetitive sequences. Science 224:686-692 (Pubitemid 14140041)
25. Gurdon JB (2006) From nuclear transfer to nuclear reprogramming: The reversal of cell differentiation. Annu Rev Cell Dev Biol 22:1-22
26. Harris WA, Hartenstein V (1991) Neuronal determination without cell division in Xenopus embryos. Neuron 6:499-515
27. Hochegger H, Dejsuphong D, Sonoda E, Saberi A, Rajendra E, Kirk J, Hunt T, Takeda S (2007) An essential role for Cdk1 in S phase control is revealed via chemical genetics in vertebrate cells. J Cell Biol 178:257-268 (Pubitemid 47076462)
28. Hofmann F, Livingston DM (1996) Differential effects of cdk2 and cdk3 on the control of pRb and E2F function during G1 exit. Genes Dev 10:851-861 (Pubitemid 26114739)
29. Hyrien O, Mechali M (1993) Chromosomal replication initiates and terminates at random sequences but at regular intervals in the ribosomal DNA of Xenopus early embryos. EMBO J 12:4511-4520 (Pubitemid 23330257)
30. Hyrien O, Maric C, Mechali M (1995) Transition in specification of embryonic metazoan DNA replication origins. Science 270:994-997
31. Kalaszczynska I et al (2009) Cyclin A is redundant in fibroblasts but essential in hematopoietic and embryonic stem cells. Cell 138:352-365
32. Katsuno Y et al (2009) Cyclin A-Cdk1 regulates the origin firing program in mammalian cells. Proc Natl Acad Sci USA 106:3184-3189
33. Kimelman D, Kirschner M, Scherson T (1987) The events of the midblastula transition in Xenopus are regulated by changes in the cell cycle. Cell 48:399-407 (Pubitemid 18095355)
34. Krasinska L, Besnard E, Cot E, Dohet C, Mechali M, Lemaitre JM, Fisher D (2008a) Cdk1 and Cdk2 activity levels determine the efficiency of replication origin firing in Xenopus. EMBO J 27:758-769 (Pubitemid 351506679)
35. Krasinska L, Cot E, Fisher D (2008b) Selective chemical inhibition as a tool to study Cdk1 and Cdk2 functions in the cell cycle. Cell Cycle 7:1702-1708 (Pubitemid 351988734)
36. Kumagai A, Shevchenko A, Dunphy WG (2010) Treslin collaborates with TopBP1 in triggering the initiation of DNA replication. Cell 140:349-359
37. Labit H, Perewoska I, Germe T, Hyrien O, Marheineke K (2008) DNA replication timing is deterministic at the level of chromosomal domains but stochastic at the level of replicons in Xenopus egg extracts. Nucleic Acids Res 36:5623-5634
38. Lemaitre JM, Danis E, Pasero P, Vassetzky Y, Mechali M (2005) Mitotic remodeling of the replicon and chromosome structure. Cell 123:787-801 (Pubitemid 41721027)
39. Loog M, Morgan DO (2005) Cyclin specificity in the phosphorylation of cyclin-dependent kinase substrates. Nature 434:104-108 (Pubitemid 40349393)
40. Lu ZH, Sittman DB, Romanowski P, Leno GH (1998) Histone H1 reduces the frequency of initiation in Xenopus egg extract by limiting the assembly of prereplication complexes on sperm chromatin. Mol Biol Cell 9:1163-1176 (Pubitemid 28457307)
41. Ma T et al (2000) Cell cycle-regulated phosphorylation of p220(NPAT) by cyclin E/Cdk2 in Cajal bodies promotes histone gene transcription. Genes Dev 14:2298-2313
42. Magnaghi-Jaulin L, Groisman R, Naguibneva I, Robin P, Lorain S, Le Villain JP, Troalen F, Trouche D, Harel-Bellan A (1998) Retinoblastoma protein represses transcription by recruiting a histone deacetylase. Nature 391:601-605 (Pubitemid 28157604)
43. Mailand N, Diffley JF (2005) CDKs promote DNA replication origin licensing in human cells by protecting Cdc6 from APC/C-dependent proteolysis. Cell 122:915-926 (Pubitemid 41345208)
44. Marheineke K, Hyrien O (2004) Control of replication origin density and firing time in Xenopus egg extracts: Role of a caffeine-sensitive, ATR-dependent checkpoint. J Biol Chem 279:28071-28081 (Pubitemid 38900079)
45. Masumoto H, Muramatsu S, Kamimura Y, Araki H (2002) S-Cdk-dependent phosphorylation of Sld2 essential for chromosomal DNA replication in budding yeast. Nature 415:651-655 (Pubitemid 34136393)
46. Matsuno K, Kumano M, Kubota Y, Hashimoto Y, Takisawa H (2006) The N-terminal noncatalytic region of Xenopus RecQ4 is required for chromatin binding of DNA polymerase alpha in the initiation of DNA replication. Mol Cell Biol 26:4843-4852 (Pubitemid 43955802)
47. Moore JD, Kirk JA, Hunt T (2003) Unmasking the S-phase-promoting potential of cyclin B1. Science 300:987-990 (Pubitemid 36548887)
48. Mukherjee P, Winter SL, Alexandrow MG (2010) Cell cycle arrest by transforming growth factor beta1 near G1/S is mediated by acute abrogation of prereplication complex activation involving an Rb-MCM interaction. Mol Cell Biol 30:845-856
49. Newport J, Kirschner M (1982a) A major developmental transition in early Xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage. Cell 30:675-686 (Pubitemid 13204657)
50. Newport J, Kirschner M (1982b) A major developmental transition in early Xenopus embryos: II. Control of the onset of transcription. Cell 30:687-696 (Pubitemid 13204658)
51. Nightingale K, Dimitrov S, Reeves R, Wolffe AP (1996) Evidence for a shared structural role for HMG1 and linker histones B4 and H1 in organizing chromatin. EMBO J 15:548-561 (Pubitemid 26044568)
52. Okuno Y, McNairn AJ, den Elzen N, Pines J, Gilbert DM (2001) Stability, chromatin association and functional activity of mammalian pre-replication complex proteins during the cell cycle. EMBO J 20:4263-4277 (Pubitemid 32751842)
53. Ortega S, Prieto I, Odajima J, Martin A, Dubus P, Sotillo R, Barbero JL, Malumbres M, Barbacid M (2003) Cyclin-dependent kinase 2 is essential for meiosis but not for mitotic cell division in mice. Nat Genet 35:25-31 (Pubitemid 37048592)
54. Pacek M, Walter JC (2004) A requirement for MCM7 and Cdc45 in chromosome unwinding during eukaryotic DNA replication. Embo J 23:3667-3676 (Pubitemid 39336288)
55. Pacek M, Tutter AV, Kubota Y, Takisawa H, Walter JC (2006) Localization of MCM2-7, Cdc45, and GINS to the site of DNA unwinding during eukaryotic DNA replication. Mol Cell 21:581-587 (Pubitemid 43228013)
56. Pederson T (2000) Half a century of "the nuclear matrix". Mol Biol Cell 11:799-805
57. Prioleau MN, Huet J, Sentenac A, Mechali M (1994) Competition between chromatin and transcription complex assembly regulates gene expression during early development. Cell 77:439-449 (Pubitemid 24145204)
58. Ren S, Rollins BJ (2004) Cyclin C/cdk3 promotes Rb-dependent G0 exit. Cell 117:239-251 (Pubitemid 38496243)
59. RenB,Cam H, TakahashiY,Volkert T, Terragni J, Young RA,DynlachtBD(2002) E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpoints. Genes Dev 16:245-256 (Pubitemid 34075816)
60. Rollins MB, Andrews MT (1991) Morphogenesis and regulated gene activity are independent of DNA replication in Xenopus embryos. Development 112:559-569
61. Saka Y, Smith JC (2001) Spatial and temporal patterns of cell division during early Xenopus embryogenesis. Dev Biol 229:307-318 (Pubitemid 32108693)
62. Sanchez-Pulido L, Diffley JF, Ponting CP (2010) Homology explains the functional similarities of Treslin/Ticrr and Sld3. Curr Biol 20:R509-R510
63. Sangrithi MN, Bernal JA, Madine M, Philpott A, Lee J, Dunphy WG, Venkitaraman AR (2005) Initiation of DNA replication requires the RECQL4 protein mutated in Rothmund-Thomson syndrome. Cell 121:887-898 (Pubitemid 40806420)
64. Santamaria D et al (2007) Cdk1 is sufficient to drive the mammalian cell cycle. Nature 448:6046-6050
65. Satyanarayana A, Berthet C, Lopez-Molina J, Coppola V, Tessarollo L, Kaldis P (2008) Genetic substitution of Cdk1 by Cdk2 leads to embryonic lethality and loss of meiotic function of Cdk2. Development 135:3389-3400
66. Sherr CJ (1995) D-type cyclins. Trends Biochem Sci 20:187-190
67. Shinomiya T, Ina S (1991) Analysis of chromosomal replicons in early embryos of Drosophila melanogaster by two-dimensional gel electrophoresis. Nucleic Acids Res 19:3935-3941 (Pubitemid 21912764)
68. Smith RC, Dworkin-Rastl E, Dworkin MB (1988) Expression of a histone H1-like protein is restricted to early Xenopus development. Genes Dev 2:1284-1295
69. Sterner JM, Dew-Knight S, Musahl C, Kornbluth S, Horowitz JM (1998) Negative regulation of DNA replication by the retinoblastoma protein is mediated by its association with MCM7. Mol Cell Biol 18:2748-2757 (Pubitemid 28183444)
70. Strausfeld UP, Howell M, Descombes P, Chevalier S, Rempel RE, Adamczewski J, Maller JL, Hunt T, Blow JJ (1996) Both cyclin A and cyclin E have S-phase promoting (SPF) activity in Xenopus egg extracts. J Cell Sci 109:1555-1563 (Pubitemid 26190504)
71. Tanaka S, Umemori T, Hirai K, Muramatsu S, Kamimura Y, Araki H (2007) CDK-dependent phosphorylation of Sld2 and Sld3 initiates DNA replication in budding yeast. Nature 445:328-332 (Pubitemid 46122821)
72. Tetsu O, McCormick F (2003) Proliferation of cancer cells despite CDK2 inhibition. Cancer Cell 3:233-245 (Pubitemid 37443879)
73. Thomson AM, Gillespie PJ, Blow JJ (2010) Replication factory activation can be decoupled from the replication timing program by modulating Cdk levels. J Cell Biol 188:209-221
74. Trouche D, Le Chalony C, Muchardt C, Yaniv M, Kouzarides T (1997) RB and hbrm cooperate to repress the activation functions of E2F1. Proc Natl Acad Sci USA 94:11268-11273 (Pubitemid 27450987)
75. Vassetzky Y, Hair A, Mechali M (2000) Rearrangement of chromatin domains during development in Xenopus. Genes Dev 14:1541-1552 (Pubitemid 30421845)
76. Walter J, Newport J (2000) Initiation of eukaryotic DNA replication: Origin unwinding and sequential chromatin association of Cdc45, RPA, and DNA polymerase alpha. Mol Cell 5:617-627
77. Wolffe AP (1997) Histone H1. Int J Biochem Cell Biol 29:1463-1466 (Pubitemid 28153494)
78. Worcel A, Han S, Wong ML (1978) Assembly of newly replicated chromatin. Cell 15:969-977
79. Yoshida K, Inoue I (2004) Regulation of Geminin and Cdt1 expression by E2F transcription factors. Oncogene 23:3802-3812 (Pubitemid 38725693)
80. Zegerman P, Diffley JF (2007) Phosphorylation of Sld2 and Sld3 by cyclin-dependent kinases promotes DNA replication in budding yeast. Nature 445:281-285 (Pubitemid 46122811)
81. Zhang J, Xu F, Hashimshony T, Keshet I, Cedar H (2002) Establishment of transcriptional competence in early and late S phase. Nature 420:198-202 (Pubitemid 35340126)
82. Zhao J, Kennedy BK, Lawrence BD, Barbie DA, Matera AG, Fletcher JA, Harlow E (2000) NPAT links cyclin E-Cdk2 to the regulation of replication-dependent histone gene transcription. Genes Dev 14:2283-2297