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Volumn 41, Issue 8, 2011, Pages 620-627

Are structural proteins in insect cuticles dominated by intrinsically disordered regions?

Author keywords

Helix; Strands; Disordered regions; Predictors; R R consensus; Resilin

Indexed keywords

INSECT PROTEIN; RESILIN;

EID: 79959512137     PISSN: 09651748     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibmb.2011.03.015     Document Type: Article
Times cited : (24)

References (50)
  • 1
    • 50549192159 scopus 로고
    • The cross-links in resilin identified as dityrosine and trityrosine
    • Andersen S.O. The cross-links in resilin identified as dityrosine and trityrosine. Biochim. Biophys. Acta 1964, 93:213-215.
    • (1964) Biochim. Biophys. Acta , vol.93 , pp. 213-215
    • Andersen, S.O.1
  • 2
    • 0034084617 scopus 로고    scopus 로고
    • Studies on proteins in post-ecdysial nymphal cuticle of locust, Locusta migratoria, and the cockroach, Blaberus craniifer
    • Andersen S.O. Studies on proteins in post-ecdysial nymphal cuticle of locust, Locusta migratoria, and the cockroach, Blaberus craniifer. Insect Biochem. Mol. Biol. 2000, 30:569-577.
    • (2000) Insect Biochem. Mol. Biol. , vol.30 , pp. 569-577
    • Andersen, S.O.1
  • 3
    • 0035100280 scopus 로고    scopus 로고
    • Matrix proteins from insect pliable cuticles: are they flexible and easily deformed?
    • Andersen S.O. Matrix proteins from insect pliable cuticles: are they flexible and easily deformed?. Insect Biochem. Mol. Biol. 2001, 31:445-452.
    • (2001) Insect Biochem. Mol. Biol. , vol.31 , pp. 445-452
    • Andersen, S.O.1
  • 4
    • 0036712301 scopus 로고    scopus 로고
    • Characteristic properties of proteins from pre-ecdysial cuticle of larvae and pupae of the mealworm Tenebrio molitor
    • Andersen S.O. Characteristic properties of proteins from pre-ecdysial cuticle of larvae and pupae of the mealworm Tenebrio molitor. Insect Biochem. Mol. Biol. 2002, 32:1077-1087.
    • (2002) Insect Biochem. Mol. Biol. , vol.32 , pp. 1077-1087
    • Andersen, S.O.1
  • 5
    • 77953916933 scopus 로고    scopus 로고
    • Studies on resilin-like gene products in insects
    • Andersen S.O. Studies on resilin-like gene products in insects. Insect Biochem. Mol. Biol. 2010, 40:541-551.
    • (2010) Insect Biochem. Mol. Biol. , vol.40 , pp. 541-551
    • Andersen, S.O.1
  • 7
    • 0034866354 scopus 로고    scopus 로고
    • Tentative identification of a resilin gene in Drosophila melanogaster
    • Ardell D.H., Andersen S.O. Tentative identification of a resilin gene in Drosophila melanogaster. Insect Biochem. Mol. Biol. 2001, 31:965-970.
    • (2001) Insect Biochem. Mol. Biol. , vol.31 , pp. 965-970
    • Ardell, D.H.1    Andersen, S.O.2
  • 8
  • 9
    • 27944488680 scopus 로고    scopus 로고
    • Accurate prediction of protein disordered regions by mining protein structure data
    • Cheng J.L., Sweredoski M.J., Baldi P. Accurate prediction of protein disordered regions by mining protein structure data. Data Mining Knowledge Discov. 2005, 11:213-222.
    • (2005) Data Mining Knowledge Discov. , vol.11 , pp. 213-222
    • Cheng, J.L.1    Sweredoski, M.J.2    Baldi, P.3
  • 10
    • 48449106792 scopus 로고    scopus 로고
    • Jpred 3 secondary structure prediction server
    • Cole C., Barber J.D., Barton G.J. Jpred 3 secondary structure prediction server. Nucleic Acid Res. 2008, 36(Suppl. 2):W197-W201.
    • (2008) Nucleic Acid Res. , vol.36 , Issue.SUPPL. 2
    • Cole, C.1    Barber, J.D.2    Barton, G.J.3
  • 11
    • 24044538903 scopus 로고    scopus 로고
    • IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
    • Dosztanyi Z., Csizmok V., Tompa P., István S. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 2005, 21:3433-3434.
    • (2005) Bioinformatics , vol.21 , pp. 3433-3434
    • Dosztanyi, Z.1    Csizmok, V.2    Tompa, P.3    István, S.4
  • 12
    • 14644435825 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins and their functions
    • Dyson H.J., Wright P.E. Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol. 2005, 6:197-208.
    • (2005) Nat. Rev. Mol. Cell Biol. , vol.6 , pp. 197-208
    • Dyson, H.J.1    Wright, P.E.2
  • 14
    • 13844255387 scopus 로고    scopus 로고
    • Natively unfolded proteins
    • Fink A.L. Natively unfolded proteins. Curr. Opin. Struct. Biol. 2005, 15:35-41.
    • (2005) Curr. Opin. Struct. Biol. , vol.15 , pp. 35-41
    • Fink, A.L.1
  • 15
    • 0029595442 scopus 로고
    • SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments
    • Geourjon C., Deleage G. SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments. Comput. Appl. Biosci. 1995, 11:681-684.
    • (1995) Comput. Appl. Biosci. , vol.11 , pp. 681-684
    • Geourjon, C.1    Deleage, G.2
  • 16
    • 0033026514 scopus 로고    scopus 로고
    • Improved performance in protein secondary structure prediction by inhomogeneous score combination
    • Guermeur Y., Geourjon C., Gallinari P., Deleage G. Improved performance in protein secondary structure prediction by inhomogeneous score combination. Bioinformatics 1999, 15:413-421.
    • (1999) Bioinformatics , vol.15 , pp. 413-421
    • Guermeur, Y.1    Geourjon, C.2    Gallinari, P.3    Deleage, G.4
  • 20
    • 17844379783 scopus 로고    scopus 로고
    • Unique features of the structural model of 'hard' cuticle proteins: implications for chitin-protein interactions and cross-linking in cuticle
    • Iconomidou V.A., Willis J.H., Hamodrakas S.J. Unique features of the structural model of 'hard' cuticle proteins: implications for chitin-protein interactions and cross-linking in cuticle. Insect Biochem. Mol. Biol. 2005, 35:553-560.
    • (2005) Insect Biochem. Mol. Biol. , vol.35 , pp. 553-560
    • Iconomidou, V.A.1    Willis, J.H.2    Hamodrakas, S.J.3
  • 21
    • 34547588389 scopus 로고    scopus 로고
    • PrDOS: prediction of disordered protein regions from amino acid sequence
    • Ishida T., Kinoshita K. PrDOS: prediction of disordered protein regions from amino acid sequence. Nucleic Acid Res. 2007, 35:W460-W464.
    • (2007) Nucleic Acid Res. , vol.35
    • Ishida, T.1    Kinoshita, K.2
  • 22
    • 44349192171 scopus 로고    scopus 로고
    • Prediction of disordered regions in proteins based on the meta approach
    • Ishida T., Kinoshita K. Prediction of disordered regions in proteins based on the meta approach. Bioinformatics 2008, 24:1344-1348.
    • (2008) Bioinformatics , vol.24 , pp. 1344-1348
    • Ishida, T.1    Kinoshita, K.2
  • 23
    • 0001095981 scopus 로고
    • Biology and physics of locust flight. V. Strength and elasticity of locust cuticle
    • Jensen M., Weis-Fogh T. Biology and physics of locust flight. V. Strength and elasticity of locust cuticle. Phil. Trans. Royal Soc. London. Ser. B. Biol. Sci. 1962, 245:137-169.
    • (1962) Phil. Trans. Royal Soc. London. Ser. B. Biol. Sci. , vol.245 , pp. 137-169
    • Jensen, M.1    Weis-Fogh, T.2
  • 24
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • Jones D.T. Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 1999, 292:195-202.
    • (1999) J. Mol. Biol. , vol.292 , pp. 195-202
    • Jones, D.T.1
  • 25
    • 34447095720 scopus 로고    scopus 로고
    • Drosophila cuticular proteins with the R&R Consensus: annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences
    • Karouzou M.V., Spyropoulos Y., Iconomidou V.A., Cornman R.S., Hamodrakas S.J., Willis J.H. Drosophila cuticular proteins with the R&R Consensus: annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences. Insect Biochem. Mol. Biol. 2007, 37:754-760.
    • (2007) Insect Biochem. Mol. Biol. , vol.37 , pp. 754-760
    • Karouzou, M.V.1    Spyropoulos, Y.2    Iconomidou, V.A.3    Cornman, R.S.4    Hamodrakas, S.J.5    Willis, J.H.6
  • 28
    • 0032510720 scopus 로고    scopus 로고
    • Characterization of two new cuticular genes specifically expressed during the post-ecdysial molting period in Tenebrio molitor
    • Mathelin J., Quennedey B., Bouhin H., Delachambre J. Characterization of two new cuticular genes specifically expressed during the post-ecdysial molting period in Tenebrio molitor. Gene 1998, 211:351-359.
    • (1998) Gene , vol.211 , pp. 351-359
    • Mathelin, J.1    Quennedey, B.2    Bouhin, H.3    Delachambre, J.4
  • 29
    • 0033933636 scopus 로고    scopus 로고
    • Cascaded multiple classifiers for secondary structure prediction
    • Ouali M., King R.D. Cascaded multiple classifiers for secondary structure prediction. Prot. Sci. 2000, 9:1162-1176.
    • (2000) Prot. Sci. , vol.9 , pp. 1162-1176
    • Ouali, M.1    King, R.D.2
  • 31
    • 68949213019 scopus 로고    scopus 로고
    • A generic method for assignment of reliability scores applied to solvent accessibility predictions
    • Petersen B., Petersen T.N., Andersen P., Nielsen M., Lundegaard C. A generic method for assignment of reliability scores applied to solvent accessibility predictions. BMC Struct. Biol. 2009, 9:51.
    • (2009) BMC Struct. Biol. , vol.9 , pp. 51
    • Petersen, B.1    Petersen, T.N.2    Andersen, P.3    Nielsen, M.4    Lundegaard, C.5
  • 32
    • 17444397116 scopus 로고    scopus 로고
    • Porter: a new, accurate server for protein secondary structure prediction
    • Pollastri G., McLysaght A. Porter: a new, accurate server for protein secondary structure prediction. Bioinformatics 2005, 21:1719-1720.
    • (2005) Bioinformatics , vol.21 , pp. 1719-1720
    • Pollastri, G.1    McLysaght, A.2
  • 34
    • 0023688992 scopus 로고
    • Structure and expression of a Manduca sexta larval cuticle gene homologous to Drosophila cuticle genes
    • Rebers J.E., Riddiford L.M. Structure and expression of a Manduca sexta larval cuticle gene homologous to Drosophila cuticle genes. J. Mol. Biol. 1988, 203:411-423.
    • (1988) J. Mol. Biol. , vol.203 , pp. 411-423
    • Rebers, J.E.1    Riddiford, L.M.2
  • 35
    • 0034804735 scopus 로고    scopus 로고
    • A conserved domain in arthropod cuticular proteins binds chitin
    • Rebers J.E., Willis J.H. A conserved domain in arthropod cuticular proteins binds chitin. Insect Biochem. Mol. Biol. 2001, 31:1083-1093.
    • (2001) Insect Biochem. Mol. Biol. , vol.31 , pp. 1083-1093
    • Rebers, J.E.1    Willis, J.H.2
  • 36
    • 34547599318 scopus 로고    scopus 로고
    • Natively unstructured loops differ from other loops
    • Schlessinger A., Liu J., Rost B. Natively unstructured loops differ from other loops. PLoS Comput. Biol. 2007, 3:e140.
    • (2007) PLoS Comput. Biol. , vol.3
    • Schlessinger, A.1    Liu, J.2    Rost, B.3
  • 37
    • 34548750953 scopus 로고    scopus 로고
    • Natively unstructured regions in proteins identified from contact predictions
    • Schlessinger A., Punta M., Rost B. Natively unstructured regions in proteins identified from contact predictions. Bioinformatics 2007, 23:2376-2384.
    • (2007) Bioinformatics , vol.23 , pp. 2376-2384
    • Schlessinger, A.1    Punta, M.2    Rost, B.3
  • 38
    • 84885949386 scopus 로고    scopus 로고
    • Improved disorder prediction by combination of orthogonal approaches
    • Schlessinger A., Punta M., Yachdav G., Kajan L., Rost B. Improved disorder prediction by combination of orthogonal approaches. PLoS ONE 2009, 4:e4433.
    • (2009) PLoS ONE , vol.4
    • Schlessinger, A.1    Punta, M.2    Yachdav, G.3    Kajan, L.4    Rost, B.5
  • 39
    • 33645288849 scopus 로고    scopus 로고
    • PROFbval: predict flexible and rigid residues in proteins
    • Schlessinger A., Yachdav G., Rost B. PROFbval: predict flexible and rigid residues in proteins. Bioinformatics 2006, 22:891-893.
    • (2006) Bioinformatics , vol.22 , pp. 891-893
    • Schlessinger, A.1    Yachdav, G.2    Rost, B.3
  • 40
    • 34548738213 scopus 로고    scopus 로고
    • POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix
    • Shimizu K., Hirose S., Noguchi T. POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix. Bioinformatics 2007, 23:2337-2338.
    • (2007) Bioinformatics , vol.23 , pp. 2337-2338
    • Shimizu, K.1    Hirose, S.2    Noguchi, T.3
  • 41
    • 4744354730 scopus 로고    scopus 로고
    • Analysis of the chitin recognition mechanism of cuticle proteins from the soft cuticle of the silkworm, Bombyx mori
    • Togawa T., Nakato H., Izumi S. Analysis of the chitin recognition mechanism of cuticle proteins from the soft cuticle of the silkworm, Bombyx mori. Insect Biochem. Mol. Biol. 2004, 34:1059-1067.
    • (2004) Insect Biochem. Mol. Biol. , vol.34 , pp. 1059-1067
    • Togawa, T.1    Nakato, H.2    Izumi, S.3
  • 43
    • 0016855906 scopus 로고
    • Locust oviposition: stress softening of the extensible intersegmental membranes
    • Vincent J.F.V. Locust oviposition: stress softening of the extensible intersegmental membranes. Proc. R. Soc. Lond. B. 1975, 188:189-201.
    • (1975) Proc. R. Soc. Lond. B. , vol.188 , pp. 189-201
    • Vincent, J.F.V.1
  • 44
    • 1542358787 scopus 로고    scopus 로고
    • Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
    • Ward J.J., Sodhi J.S., McGuffin I.J., Buxton B.F., Jones D.T. Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J. Mol. Biol. 2004, 337:635-645.
    • (2004) J. Mol. Biol. , vol.337 , pp. 635-645
    • Ward, J.J.1    Sodhi, J.S.2    McGuffin, I.J.3    Buxton, B.F.4    Jones, D.T.5
  • 45
    • 0001640203 scopus 로고
    • A rubber-like protein in insect cuticle
    • Weis-Fogh T. A rubber-like protein in insect cuticle. J. Exp. Biol. 1960, 37:889-907.
    • (1960) J. Exp. Biol. , vol.37 , pp. 889-907
    • Weis-Fogh, T.1
  • 46
    • 0000440430 scopus 로고
    • Thermodynamic properties of resilin, a rubber-like protein
    • Weis-Fogh T. Thermodynamic properties of resilin, a rubber-like protein. J. Mol. Biol. 1961, 3:520-531.
    • (1961) J. Mol. Biol. , vol.3 , pp. 520-531
    • Weis-Fogh, T.1
  • 47
    • 85025366768 scopus 로고
    • Molecular interpretation of the elasticity of resilin, a rubber-like protein
    • Weis-Fogh T. Molecular interpretation of the elasticity of resilin, a rubber-like protein. J. Mol. Biol. 1961, 3:648-667.
    • (1961) J. Mol. Biol. , vol.3 , pp. 648-667
    • Weis-Fogh, T.1
  • 48
    • 77950520962 scopus 로고    scopus 로고
    • Structural cuticular proteins from arthropods: annotation, nomenclature, and sequence characteristics in the genomics era
    • Willis J.H. Structural cuticular proteins from arthropods: annotation, nomenclature, and sequence characteristics in the genomics era. Insect Biochem. Mol. Biol. 2010, 40:189-204.
    • (2010) Insect Biochem. Mol. Biol. , vol.40 , pp. 189-204
    • Willis, J.H.1


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