Dynamics of the degradation of ubiquitinated proteins by proteasomes and autophagy: Association with sequestosome 1/p62

Journal of Biological Chemistry

Volumn 286, Issue 25, 2011, Pages 22426-22440

  Myeku, Natura ^a   Figueiredo Pereira, Maria E ^a  

^a CITY UNIVERSITY OF NEW YORK   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIUM CHLORIDE; AUTOPHAGOSOMES; AUTOPHAGY; BAFILOMYCIN; CORTICAL NEURONS; GENETIC INHIBITION; MOUSE EMBRYONIC FIBROBLASTS; NEURODEGENERATION; POLYUBIQUITINATION; PROTEASOMAL PATHWAY; PROTEASOME INHIBITORS; PROTEASOMES; PROTEOTOXICITY; SEQUESTOSOME; SERUM-FREE CONDITIONS; UBIQUITINATED PROTEINS;

AMMONIUM COMPOUNDS; BODY FLUIDS; CELL CULTURE; CHLORINE COMPOUNDS; DEGRADATION; MAMMALS;

PROTEINS;

3 METHYLADENINE; AMMONIUM CHLORIDE; BAFILOMYCIN A1; CHLOROQUINE; EPOXOMICIN; PROTEASOME; PROTEIN P62; UBIQUITINATED PROTEIN;

ANIMAL CELL; ARTICLE; AUTOPHAGY; BRAIN CORTEX; CONTROLLED STUDY; DRUG INHIBITION; ENZYME ACTIVITY; ENZYME INHIBITION; FEMALE; FIBROBLAST; HUMAN; HUMAN CELL; MOLECULAR DYNAMICS; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEOMICS; RAT; UBIQUITINATION;

ADAPTOR PROTEINS, SIGNAL TRANSDUCING; ANIMALS; AUTOPHAGY; CELL EXTRACTS; CELL LINE, TUMOR; CEREBRAL CORTEX; COUMARINS; FEMALE; HUMANS; HYDROLYSIS; MICE; MICROTUBULE-ASSOCIATED PROTEINS; NEURONS; OLIGOPEPTIDES; PREGNANCY; PROTEASE INHIBITORS; PROTEASOME ENDOPEPTIDASE COMPLEX; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, QUATERNARY; PROTEIN TRANSPORT; RATS; TIME FACTORS; UBIQUITINATED PROTEINS;

RATTUS;

EID: 79959364986     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.149252     Document Type: Article

References (53)

1. Mayer, R. J. (2003) Drug News Perspect. 16, 103-108
2. Ciechanover, A. (2005) Cell Death Differ. 12, 1178-1190
3. Hara, T., Nakamura, K., Matsui, M., Yamamoto, A., Nakahara, Y., Suzuki-Migishima, R., Yokoyama, M., Mishima, K., Saito, I., Okano, H., and Mizushima, N. (2006) Nature 441, 885-889
4. Komatsu, M., Waguri, S., Chiba, T., Murata, S., Iwata, J., Tanida, I., Ueno, T., Koike, M., Uchiyama, Y., Kominami, E., and Tanaka, K. (2006) Nature 441, 880-884
5. Klionsky, D. J. (2006) Nature 441, 819-820
6. Koga, H., Kaushik, S., and Cuervo, A. M. (2011) Ageing Res. Rev. 10, 205-215
7. Shin, J. (1998) Arch. Pharm. Res. 21, 629-633
8. Park, I., Chung, J., Walsh, C. T., Yun, Y., Strominger, J. L., and Shin, J. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 12338-12342
9. Wooten, M. W., Hu, X., Babu, J. R., Seibenhener, M. L., Geetha, T., Paine, M. G., and Wooten, M. C. (2006) J. Biomed. Biotechnol. 2006, 62079
10. Pankiv, S., Clausen, T. H., Lamark, T., Brech, A., Bruun, J. A., Outzen, H., Øvervatn, A., Bjørkøy, G., and Johansen, T. (2007) J. Biol. Chem. 282, 24131-24145
11. Seibenhener, M. L., Geetha, T., and Wooten, M. W. (2007) FEBS. Lett. 581, 175-179
12. Biedler, J. L., Roffler-Tarlov, S., Schachner, M., and Freedman, L. S. (1978) Cancer Res. 38, 3751-3757
13. Kuma, A., Hatano, M., Matsui, M., Yamamoto, A., Nakaya, H., Yoshimori, T., Ohsumi, Y., Tokuhisa, T., and Mizushima, N. (2004) Nature 432, 1032-1036
14. Biederer, T., and Scheiffele, P. (2007) Nat. Protoc. 2, 670-676
15. Mosmann, T. (1983) J. Immunol. Methods 65, 55-63
16. Wilk, S., and Orlowski, M. (1983) J. Neurochem. 40, 842-849
17. Elsasser, S., Schmidt, M., and Finley, D. (2005) Methods Enzymol. 398, 353-363
18. Ogburn, K. D., and Figueiredo-Pereira, M. E. (2006) J. Biol. Chem. 281, 23274-23284
19. Wanker, E. E., Scherzinger, E., Heiser, V., Sittler, A., Eickhoff, H., and Lehrach, H. (1999) Methods Enzymol. 309, 375-386
20. Söderberg, O., Gullberg, M., Jarvius, M., Ridderstråle, K., Leuchowius, K. J., Jarvius, J., Wester, K., Hydbring, P., Bahram, F., Larsson, L. G., and Landegren, U. (2006) Nat. Methods. 3, 995-1000
21. Komatsu, M., Waguri, S., Koike, M., Sou, Y. S., Ueno, T., Hara, T., Mizushima, N., Iwata, J., Ezaki, J., Murata, S., Hamazaki, J., Nishito, Y., Iemura, S., Natsume, T., Yanagawa, T., Uwayama, J., Warabi, E., Yoshida, H., Ishii, T., Kobayashi, A., Yamamoto, M., Yue, Z., Uchiyama, Y., Kominami, E., and Tanaka, K. (2007) Cell 131, 1149-1163
22. Bjørkøy, G., Lamark, T., Brech, A., Outzen, H., Perander, M., Overvatn, A., Stenmark, H., and Johansen, T. (2005) J. Cell Biol. 171, 603-614
23. Qiao, L., and Zhang, J. (2009) Neurosci. Lett. 456, 15-19
24. Stein, R. L., Melandri, F., and Dick, L. (1996) Biochemistry 35, 3899-3908
25. Sasaki, T., Kikuchi, T., Yumoto, N., Yoshimura, N., and Murachi, T. (1984) J. Biol. Chem. 259, 12489-12494
26. Tan, J. M., Wong, E. S., Kirkpatrick, D. S., Pletnikova, O., Ko, H. S., Tay, S. P., Ho, M. W., Troncoso, J., Gygi, S. P., Lee, M. K., Dawson, V. L., Dawson, T. M., and Lim, K. L. (2008) Hum. Mol. Genet. 17, 431-439
27. Meiners, S., Heyken, D., Weller, A., Ludwig, A., Stangl, K., Kloetzel, P. M., and Krüger, E. (2003) J. Biol. Chem. 278, 21517-21525
28. Gao, Z., Gammoh, N., Wong, P. M., Erdjument-Bromage, H., Tempst, P., and Jiang, X. (2010) Autophagy 6, 126-137
29. Fredriksson, S., Gullberg, M., Jarvius, J., Olsson, C., Pietras, K., Gústafsdóttir, S. M., Ostman, A., and Landegren, U. (2002) Nat. Biotechnol. 20, 473-477
30. Weibrecht, I., Leuchowius, K. J., Clausson, C. M., Conze, T., Jarvius, M., Howell, W. M., Kamali-Moghaddam, M., and Söderberg, O. (2010) Expert Rev. Proteomics 7, 401-409
31. Wibo, M., and Poole, B. (1974) J. Cell Biol. 63, 430-440
32. Paludan, C., Schmid, D., Landthaler, M., Vockerodt, M., Kube, D., Tuschl, T., and Münz, C. (2005) Science 307, 593-596
33. Poole, B., and Ohkuma, S. (1981) J. Cell Biol. 90, 665-669
34. Underwood, B. R., Imarisio, S., Fleming, A., Rose, C., Krishna, G., Heard, P., Quick, M., Korolchuk, V. I., Renna, M., Sarkar, S., García-Arencibia, M., O'Kane, C. J., Murphy, M. P., and Rubinsztein, D. C. (2010) Hum. Mol. Genet. 19, 3413-3429
35. Yamamoto, A., Tagawa, Y., Yoshimori, T., Moriyama, Y., Masaki, R., and Tashiro, Y. (1998) Cell Struct. Funct. 23, 33-42
36. Seglen, P. O., and Gordon, P. B. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 1889-1892
37. Sprangers, R., Li, X., Mao, X., Rubinstein, J. L., Schimmer, A. D., and Kay, L. E. (2008) Biochemistry 47, 6727-6734
38. Lee, D. H., and Goldberg, A. L. (1996) J. Biol. Chem. 271, 27280-27284
39. Vernace, V. A., Arnaud, L., Schmidt-Glenewinkel, T., and Figueiredo-Pereira, M. E. (2007) FASEB J. 21, 2672-2682
40. Qiao, L., Hamamichi, S., Caldwell, K. A., Caldwell, G. A., Yacoubian, T. A., Wilson, S., Xie, Z. L., Speake, L. D., Parks, R., Crabtree, D., Liang, Q., Crimmins, S., Schneider, L., Uchiyama, Y., Iwatsubo, T., Zhou, Y., Peng, L., Lu, Y., Standaert, D. G., Walls, K. C., Shacka, J. J., Roth, K. A., and Zhang, J. (2008) Mol. Brain 1, 17
41. Saftig, P., Hetman, M., Schmahl, W., Weber, K., Heine, L., Mossmann, H., Köster, A., Hess, B., Evers, M., and von Figura, K. (1995) EMBO J. 14, 3599-3608
42. Nishida, Y., Arakawa, S., Fujitani, K., Yamaguchi, H., Mizuta, T., Kanaseki, T., Komatsu, M., Otsu, K., Tsujimoto, Y., and Shimizu, S. (2009) Nature 461, 654-658
43. Shimizu, S., Arakawa, S., and Nishida, Y. (2010) Autophagy 6, 290-291
44. Fredriksson, S. (2009) Nat. Methods 6, i-ii (Application Notes)
45. Johnston, J. A., Ward, C. L., and Kopito, R. R. (1998) J. Cell Biol. 143, 1883-1898
46. Zhu, K., Dunner, K., Jr., and McConkey, D. J. (2010) Oncogene 29, 451-462
47. Klionsky, D. J., Abeliovich, H., Agostinis, P., Agrawal, D. K., Aliev, G., Askew, D. S., Baba, M., Baehrecke, E. H., Bahr, B. A., Ballabio, A., Bamber, B. A., Bassham, D. C., Bergamini, E., Bi, X., Biard-Piechaczyk, M., Blum, J. S., Bredesen, D. E., Brodsky, J. L., Brumell, J. H., Brunk, U. T., Bursch, W., Camougrand, N., Cebollero, E., Cecconi, F., Chen, Y., Chin, L. S., Choi, A., Chu, C. T., Chung, J., Clarke, P. G., Clark, R. S., Clarke, S. G., Clavé, C., Cleveland, J. L., Codogno, P., Colombo, M. I., Coto-Montes, A., Cregg, J. M., Cuervo, A. M., Debnath, J., Demarchi, F., Dennis, P. B., Dennis, P. A., Deretic, V., Devenish, R. J., Di Sano, F., Dice, J. F., Difiglia, M., Dinesh-Kumar, S., Distelhorst, C. W., Djavaheri-Mergny, M., Dorsey, F. C., Dröge, W., Dron, M., Dunn, W. A., Jr., Duszenko, M., Eissa, N. T., Elazar, Z., Esclatine, A., Eskelinen, E. L., Fésüs, L., Finley, K. D., Fuentes, J. M., Fueyo, J., Fujisaki, K., Galliot, B., Gao, F. B., Gewirtz, D. A., Gibson, S. B., Gohla, A., Goldberg, A. L., Gonzalez, R., González-Estévez, C., Gorski, S., Gottlieb, R. A., Häussinger, D., He, Y. W., Heidenreich, K., Hill, J. A., Høyer-Hansen, M., Hu, X., Huang, W. P., Iwasaki, A., Jää ttelä, M., Jackson, W. T., Jiang, X., Jin, S., Johansen, T., Jung, J. U., Kadowaki, M., Kang, C., Kelekar, A., Kessel, D. H., Kiel, J. A., Kim, H. P., Kimchi, A., Kinsella, T. J., Kiselyov, K., Kitamoto, K., Knecht, E., Komatsu, M., Kominami, E., Kondo, S., Kovács, A. L., Kroemer, G., Kuan, C. Y., Kumar, R., Kundu, M., Landry, J., Laporte, M., Le, W., Lei, H. Y., Lenardo, M. J., Levine, B., Lieberman, A., Lim, K. L., Lin, F. C., Liou, W., Liu, L. F., Lopez-Berestein, G., López-Otín, C., Lu, B., Macleod, K. F., Malorni, W., Martinet, W., Matsuoka, K., Mautner, J., Meijer, A. J., Meléndez, A., Michels, P., Miotto, G., Mistiaen, W. P., Mizushima, N., Mograbi, B., Monastyrska, I., Moore, M. N., Moreira, P. I., Moriyasu, Y., Motyl, T., Münz, C., Murphy, L. O., Naqvi, N. I., Neufeld, T. P., Nishino, I., Nixon, R. A., Noda, T., Nürnberg, B., Ogawa, M., Oleinick, N. L., Olsen, L. J., Ozpolat, B., Paglin, S., Palmer, G. E., Papassideri, I., Parkes, M., Perlmutter, D. H., Perry, G., Piacentini, M., Pinkas-Kramarski, R., Prescott, M., Proikas-Cezanne, T., Raben, N., Rami, A., Reggiori, F., Rohrer, B., Rubinsztein, D. C., Ryan, K. M., Sadoshima, J., Sakagami, H., Sakai, Y., Sandri, M., Sasakawa, C., Sass, M., Schneider, C., Seglen, P. O., Seleverstov, O., Settleman, J., Shacka, J. J., Shapiro, I. M., Sibirny, A., Silva-Zacarin, E. C., Simon, H. U., Simone, C., Simonsen, A., Smith, M. A., Spanel-Borowski, K., Srinivas, V., Steeves, M., Stenmark, H., Stromhaug, P. E., Subauste, C. S., Sugimoto, S., Sulzer, D., Suzuki, T., Swanson, M. S., Tabas, I., Takeshita, F., Talbot, N. J., Tallóczy, Z., Tanaka, K., Tanaka, K., Tanida, I., Taylor, G. S., Taylor, J. P., Terman, A., Tettamanti, G., Thompson, C. B., Thumm, M., Tolkovsky, A. M., Tooze, S. A., Truant, R., Tumanovska, L. V., Uchiyama, Y., Ueno, T., Uzcátegui, N. L., van der Klei, I., Vaquero, E. C., Vellai, T., Vogel, M. W., Wang, H. G., Webster, P., Wiley, J. W., Xi, Z., Xiao, G., Yahalom, J., Yang, J. M., Yap, G., Yin, X. M., Yoshimori, T., Yu, L., Yue, Z., Yuzaki, M., Zabirnyk, O., Zheng, X., Zhu, X., and Deter, R. L. (2008) Autophagy 4, 151-175
48. Yoon, Y. H., Cho, K. S., Hwang, J. J., Lee, S. J., Choi, J. A., and Koh, J. Y. (2010) Invest. Ophthalmol. Vis. Sci. 51, 6030-6037
49. Wang, Z., and Figueiredo-Pereira, M. E. (2005) Mol. Cell. Neurosci. 29, 222-231
50. Korolchuk, V. I., Mansilla, A., Menzies, F. M., and Rubinsztein, D. C. (2009) Mol. Cell 33, 517-527
51. Moscat, J., and Diaz-Meco, M. T. (2009) Cell 137, 1001-1004
52. Cuervo, A. M. (2010) Trends Endocrinol. Metab. 21, 142-150
53. Kettern, N., Dreiseidler, M., Tawo, R., and Höhfeld, J. (2010) Biol. Chem. 391, 481-489