Genetic divergence and geographical variation in the deep-water Conus orbignyi complex (Mollusca: Conoidea)

Zoologica Scripta

Volumn 40, Issue 4, 2011, Pages 350-363

  Puillandre, Nicolas ^a,b   Meyer, Christopher P ^c   Bouchet, Philippe ^b   Olivera, Baldomero M ^a  

^a UNIVERSITY OF UTAH   (United States)

^b MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^c DEPARTMENT OF PALEOBIOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONIDAE; CONOIDEA; GASTROPODA; MOLLUSCA;

EID: 79959195579     PISSN: 03003256     EISSN: 14636409     Source Type: Journal    
DOI: 10.1111/j.1463-6409.2011.00478.x     Document Type: Article

References (56)

1. Appleton, R. D. & Palmer, R. A. (1988). Water-borne stimuli released by predatory crabs and damaged prey induce more predator-resistant shells in a marine gastropod. Proceedings of the National Academy of Sciences, 85, 4387-4391.
2. Bouchet, P., Héros, V., Lozouet, P. & Maestrati, P. (2008). A quarter-century of deep-sea malacological exploration in the South and West Pacific: where do we stand? How far to go? In V. Héros, R. H. Corwie & P. Bouchet (Eds) Tropical Deep-sea Benthos, volume 25.Paris: Mémoires du Muséum national d'Histoire naturelle 196 (pp. 9-40).
3. Bouchet, P., Lozouet, P. & Sysoev, A. V. (2009). An inordinate fondness for turrids. Deep-Sea Research II, 56, 1724-1731.
4. Colgan, D. J., Ponder, W. F., Beacham, E. & Macaranas, J. (2003). Gastropod phylogeny based on six fragments from four genes representing coding or non-coding and mitochondrial or nuclear DNA. Molluscan Research, 23, 123-148.
5. Colgan, D. J., Ponder, W. F., Beacham, E. & Macaranas, J. (2007). Molecular phylogenetics of Caenogastropoda (gastropoda: Mollusca). Molecular Phylogenetics and Evolution, 42, 717-737.
6. Coomans, H. E., Moolenbeek, R. G. & Wils, E. (1985). Alphabetical revision of the (sub)species in recent conidae 9. Ebraeus to extraordinarius with the description of conus elegans ramalhoi, nov. subspecies. Basteria, 50, 93-150.
7. De Queiroz, K. (1998). The general lineage concept of species, species criteria, and the process of speciation: A conceptual unification and terminological recommendations. In D. J. Howard & S. H. Berlocher (Eds) Endless Forms: Species and Speciation (pp. 57-75). Oxford: Oxford University Press.
8. De Queiroz, K. (2007). Species concepts and species delimitation. Systematic Biology, 56, 879-886.
9. Duda, T. F. & Kohn, A. J. (2005). Species-level phylogeography and evolutionary history of the hyperdiverse marine gastropod genus Conus. Molecular Phylogenetics and Evolution, 34, 257-272.
10. Duda, T. F., Bolin, M. B., Meyer, C. & Kohn, A. J. (2008). Hidden diversity in a hyperdiverse gastropod genus: Discovery of previously unidentified members of a Conus species complex. Molecular Phylogenetics and Evolution, 49, 867-876.
11. Eckert, C. G., Samis, K. E. & Lougheed, S. C. (2008). Genetic variation across species' geographical ranges: The central-marginal hypothesis and beyond. Molecular Ecology, 17, 1170-1188.
12. Edwards, S. V. (2009). Is a new and general theory of molecular systematics emerging? Evolution, 63, 1-19.
13. Elejalde, M. A., Madeira, M. J., Arrébola, J. R., Munoz, B. & Gomez-Moliner, B. J. (2008). Molecular phylogeny, taxonomy and evolution of the land snail genus Iberus (pulmonata: Helicidae). Journal of Zoological Systematics and Evolutionary Research, 46, 193-202.
14. Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294-299.
15. Funk, D. J. & Omland, K. E. (2003). Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Review of Ecology Evolution and Systematics, 34, 397-423.
16. Gaines, C. A., Hare, M. P., Beck, S. E. & Rosenbaum, H. C. (2005). Nuclear markers confirm taxonomic status and relationships among highly endangered and closely related right whale species. Proceedings of the Royal Society B, 272, 533-542.
17. Hall, T. A. (1999). Bioedit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/nt. Nucleic Acids Symposium Series, 41, 95-98.
18. Hebert, P. D. N., Stoeckle, M. Y., Zemlak, T. S. & Francis, C. M. (2004). Identification of birds through DNA barcodes. Plos Biology, 2, 1657-1663.
19. Huelsenbeck, J. P., Ronquist, F. & Hall, B. (2001). MrBayes: Bayesian inference of phylogeny. Bioinformatics, 17, 754-755.
20. Keane, T. M., Creevey, C. J., Pentony, M. M., Naughton, T. J. & McInerney, J. O. (2006). Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evolutionary Biology, 6, 1-17.
21. Klanten, S. O., Choat, J. H. & van Herwerden, L. (2007). Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish. Marine Biology, 150, 659-670.
22. Knowles, L. L. & Carstens, B. C. (2007). Delimiting species without monophyletic gene trees. Systematic Biology, 56, 887-895.
23. Knowlton, N. (2000). Molecular genetic analyses of species boundaries in the sea. Hydrobiologia, 420, 73-90.
24. Kumar, S., Tamura, K. & Nei, M. (2004). Mega3: Integrated software for molecular evolutionary analysis and sequence alignment. Briefings in Bioinformatics, 5, 150-163.
25. Linnen, C. R. & Farrell, B. D. (2008). Phylogenetic analysis of nuclear and mitochondrial genes reveals evolutionary relationships and mitochondrial introgression in the sertifer species group of the genus Neodiprion (hymenoptera: Diprionidae). Molecular Phylogenetics and Evolution, 48, 240-257.
26. Maddison, W. P. & Knowles, L. L. (2006). Inferring phylogeny despite incomplete lineage sorting. Systematic Biology, 55, 21-30.
27. Meyer, C. P. & Paulay, G. (2005). DNA barcoding: Error rates based on comprehensive sampling. Plos Biology, 3, 1-10.
28. Meyer, C. P., Geller, J. B. & Paulay, G. (2005). Fine scale endemism on coral reefs: Archipelagic differentiation in turbinid gastropods. Evolution, 59, 113-125.
29. Mikkelsen, N., Schander, C. & Willassen, E. (2007). Local scale DNA barcoding of bivalves (mollusca): A case study. Zoologica Scripta, 36, 455-463.
30. Monaghan, M. T., Wild, R., Elliot, M, Fujisawa, T., Balke, M., Inward, D. J. G., Lees, D. C., Ranaivosolo, R., Eggleton, P., Barraclough, T. & Vogler, A. P. (2009). Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Systematic Biology, 58, 298-311.
31. Moolenbeek, R. G., Rockel, D. & Bouchet, P. (2008). New records and new species of cones from deeper water off Fiji (Mollusca, Gastropoda, Conidae). Vita Malacologica, 6, 35-49.
32. Morando, M., Avila, L. A. & Sites, J. W. (2003). Sampling strategies for delimiting species: Genes, individuals, and populations in the Liolaemus elongatus-kriegi complex (Squamata: Liolaemidae) in andean-patagonian South America. Systematic Biology, 52, 159-185.
33. Moritz, C. & Cicero, C. (2004). DNA barcodes: Promise and pitfalls. Plos Biology, 2, 1529-1531.
34. Nam, H. H., Corneli, P. S., Watkins, M., Olivera, B. & Bandyopadhyay, P. (2009). Multiple genes elucidate the evolution of venomous snail-hunting Conus species. Molecular Phylogenetics and Evolution, 53, 645-652.
35. Olivera, B. M. (2006). Conus peptides: Biodiversity-based discovery and exogenomics. Journal of Biological Chemistry, 281, 31173-31177.
36. Palumbi, S. (1996). Nucleic acids ii: The polymerase chain reaction. In D. Hillis, C. Moritz & B. K. Mable (Eds) Molecular Systematics (pp. 205-247). Sunderland (MA): Sinauer Associates.
37. Petit, R. & Excoffier, L. (2009). Gene flow and species delimitation. Trends in Ecology and Evolution, 24, 386-393.
38. Poppe, G. T. (2008). Philippine Marine Mollusks Volume II. Hackenheim: Conchbooks.
39. Puillandre, N., Samadi, S., Boisselier, M. C., Sysoev, A. V., Kantor, Y. I., Cruaud, C., Couloux, A. & Bouchet, P. (2008). Starting to unravel the toxoglossan knot: Molecular phylogeny of the 'turrids' (Neogastropoda: Conoidea). Molecular Phylogenetics and Evolution, 47, 1122-1134.
40. Puillandre, N., Baylac, M., Boisselier, M. C., Cruaud, C. & Samadi, S. (2009). An integrative approach of species delimitation in the genus Benthomangelia (Mollusca: Conoidea). Biological Journal of the Linnean Society, 96, 696-708.
41. Puillandre, N., Sysoev, A., Olivera, B. M., Couloux, A. & Bouchet, P. (2010). Loss of planktotrophy and speciation: Geographical fragmentation in the deep-water gastropod genus Bathytoma (gastropoda, conoidea) in the western pacific. Systematics and Biodiversity, 8, 371-394.
42. Rambaut, A. & Drummond, A. J. (2007). Tracer v1.4. Available via
43. Rhodes, K. L., Lewis, R. I., Chapman, R. W. & Sadovy, Y. (2003). Genetic structure of camouflage grouper, Epinephelus polyphekadion (pisces: Serranidae), in the western central pacific. Marine Biology, 142, 771-776.
44. Rocha, L. A. (2004). Mitochondrial DNA and colour pattern variation in three western atlantic Halichoeres (Labridae), with the revalidation of two species. Copeia, 4, 770-782.
45. Röckel, D., Korn, W. & Kohn, A. J. (1995). Manual of the Living Conidae. Vol. I, Indo-pacific. Wiesbaden: Christa Hemmen Verlag.
46. Samadi, S. & Barberousse, A. (2006). The tree, the network, and the species. Biological Journal of the Linnean Society, 89, 509-521.
47. Simon, C., Franke, A. & Martin, A. (1991). The polymerase chain reaction: DNA extraction and amplification. In G. M. Hewitt, A. W. B. Johnson & J. P. W. Young (Eds) Molecular Techniques in Taxonomy (pp. 329-355). New York: Springer-Verlag.
48. Springsteen, F. J. & Leobrera, F. M. (1986). Shells of the Philippines. Manila: Carfel Seashell Museum.
49. Stamatakis, A. (2006). Raxml-vi-hpc: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
50. Terlau, H. & Olivera, B. M. (2004). Conus venoms: A rich source of novel ion channel-targeted peptides. Physiological Review, 84, 41-68.
51. Tucker, J. K. & Tenorio, M. J. (2009). Systematic Classification of Recent and Fossil Conoidean Gastropods. Hackenheim, Germany: Conchbooks.
52. Ward, R. D., Zemlak, T. S., Innes, B. H., Last, P. R. & Hebert, P. D. N. (2005). DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society B, 360, 1847-1857.
53. Wheeler, Q. D. (2009). The New Taxonomy. Boca Ratan: CRC Press.
54. Wiens, J. J. (2007). Species delimitation: New approaches for discovering diversity. Systematic Biology, 56, 875-878.
55. Wilson, B. (1994). Australian Marine Shells. Vol. 2 Prosobranch Gastropods. Part Two (neogastropods). Kallaroo, Western Australia: Odyssey Publishing.
56. Yu, D. H. & Chu, K. H. (2006). Low genetic differentiation among widely separated populations of the pearl oyster Pinctada fucata as revealed by aflp. Journal of Experimental Marine Biology and Ecology, 333, 140-146.