Low genetic differentiation among widely separated populations of the pearl oyster Pinctada fucata as revealed by AFLP

Journal of Experimental Marine Biology and Ecology

Volumn 333, Issue 1, 2006, Pages 140-146

  Yu, Da Hui ^a,b   Chu, Ka Hou ^b  

^a SOUTH CHINA SEA FISHERIES RESEARCH INSTITUTE   (China)

^b CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

AFLP; Biogeography; Genetic diversity; Pinctada fucata; Population genetics

Indexed keywords

GENETIC DIFFERENTIATION; MARINE ENVIRONMENT; MOLLUSC;

ASIA; AUSTRALASIA; AUSTRALIA; CHINA; DAYA BAY; EURASIA; FAR EAST; GUANGDONG; GULF OF TONKIN; HAINAN; HONSHU; JAPAN; KINKI; MIE; NEW SOUTH WALES; PACIFIC OCEAN; PORT STEPHENS; SANYA BAY; SOUTH CHINA SEA;

OSTREIDAE; PINCTADA; PINCTADA FUCATA;

EID: 33646566865     PISSN: 00220981     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jembe.2005.12.046     Document Type: Article

References (46)

1. Ahren D., Faedo M., Rajashekar B., and Tunlid A. Low genetic diversity among isolates of the nematode-trapping fungus Duddingtonia flagrans: evidence for recent worldwide dispersion from a single common ancestor. Mycol. Res. 108 (2004) 1205-1214
2. Ajmone-Marsan P., Valentini A., Cassandro M., Vecchiotti-Antaldi G., Bertoni G., and Kuiper M. AFLP markers for DNA fingerprinting in cattle. Anim. Genet. 28 (1997) 418-426
3. Ajmone-Marsan P., Negrini R., Crepaldi P., Milanesi E., Gorni C., Valentini A., and Cicogna M. Assessing genetic diversity in Italian goat populations using AFLP markers. Anim. Genet. 32 (2001) 281-288
4. Arnaud-Haond S., Bonhomme F., and Blanc F. Large discrepancies in differentiation of allozymes, nuclear and mitochondrial DNA loci in recently founded Pacific populations of the pearl oyster Pinctada margaritifera. J. Evol. Biol. 16 (2003) 388-398
5. Atsumi T., Komaru A., and Okamoto C. Genetic relationship among the Japanese pearl oyster Pinctada fucata martensii and other pearl oysters. Aquat. Breed. 33 (2004) 135-142 (in Japanese)
6. Beaumont A.R., and Khamdan S.A.A. Electrophoretic and morphometric characters in population differentiation of the pearl oyster, Pinctada radiata (Leach), from around Bahrain. J. Moll. Stud. 57 (1991) 433-441
7. Bensch S., and Ǻkesson M. Ten years of AFLP in ecology and evolution: why so few animals?. Mol. Ecol. 14 (2005) 2899-2914
8. Benzie J.A.H. Major genetic differences between crown-of-thorns starfish (Acanthaster planci) in the Indian and Pacific Oceans. Evolution 53 (1999) 1782-1795
9. Benzie J.A.H. The detection of spatial variation in widespread marine species: methods and bias in the analysis of population structure in the crown of thorns starfish (Echinodermata: Asteroidea). Hydrobiologia 420 (2000) 1-14
10. Benzie J.A.H., and Ballment E. Genetic differences among black-lipped pearl oyster (Pinctada margaritifera) populations in the western Pacific. Aquaculture 127 (1994) 145-156
11. Benzie J.A.H., Ballment E., Forbes A.T., Demetriades N.T., Sugama K., Haryanti, and Moria S. Mitochondrial DNA variation in Indo-Pacific populations of the giant tiger prawn, Penaeus monodon. Mol. Ecol. 11 (2002) 2553-2569
12. Cao Q. Study on the population of Psendosciaena crocea on inshore of Zhanjiang. J. Zhangjiang Ocean Univ. 18 2 (1998) 15-19
13. Colgan D.J., and Ponder W.F. Genetic discrimination of morphologically similar, sympatric species of pearl oysters (Mollusca: Bivalvia: Pinctada) in eastern Australia. Mar. Freshw. Res. 53 (2002) 697-709
14. Edmands S., and Potts D.C. Population genetic structure in brooding sea anemones (Epiactis spp.) with contrasting reproductive modes. Mar. Biol. 127 (1997) 485-498
15. Excoffier L., Smouse P.E., and Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: applications to human mitochondrial DNA restriction data. Genetics 13 (1992) 479-491
16. Haldimann P., Steinger T., and Müller-Schärer H. Low genetic differentiation among seasonal cohorts in Senecio vulgaris as revealed by amplified fragment length polymorphism analysis. Mol. Ecol. 12 (2003) 2541-2551
17. Hedgecock D., and Sly F. Genetic drift and effective population sizes of hatchery-propagated stocks of the Pacific oyster, Crassostrea gigas. Aquaculture 88 (1990) 21-38
18. Hoskin M.G. Effects of contrasting modes of larval development on the genetic structure of populations of three species of prosobranch gastropods. Mar. Biol. 127 (1997) 647-656
19. Kai Y., Nakayama K., and Nakabo T. Genetic differences among three colour morphotypes of the black rockfish, Sebastes inermis, inferred from mtDNA and AFLP analyses. Mol. Ecol. 11 (2002) 2591-2598
20. Kjólner S., Såstad S.M., Taberlet P., and Brochmann C. Amplified fragment length polymorphism versus random amplified polymorphic markers: clonal diversity in Saxifraga cernua. Mol. Ecol. 13 (2004) 81-86
21. Krauss S.L. Accurate gene diversity estimates from amplified fragment length polymorphism (AFLP) markers. Mol. Ecol. 9 (2000) 1241-1245
22. Kyle C.J., and Boulding E.G. Comparative population genetic structure of marine gastropods (Littorina spp.) with and without pelagic larval dispersal. Mar. Biol. 137 (2000) 835-845
23. Lan R., Davison A.M., Reeves P.R., and Ward L.R. AFLP analysis of Salmonella enterica serovar Typhimurium isolates of phage types DT 9 and DT 135: diversity within phage types and its epidemiological significance. Microb. Infect. 5 (2003) 841-850
24. Lessios H.A., Kessing B.D., and Robertson D.R. Massive gene flow across the world's most potent marine biogeographic barrier. Proc. R. Soc. Lond. B 265 (1998) 583-588
25. Liu Z.J., and Cordes J.F. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238 (2004) 1-37
26. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res. 27 (1967) 209-220
27. Masaoka T., and Kobayashi T. Species identification of Pinctada imbricata using intergenic spacer of nuclear ribosomal RNA genes and mitochondrial 16S ribosomal RNA gene regions. Fish. Sci. 71 (2005) 837-846
28. Meng Z., Li Y., and Xing K. Theory and Techniques on Pearl Culture (1996), Science Press, Beijing 253 (in Chinese)
29. McManus J.W. The Spratly Islands: a marine park?. Ambio 23 (1992) 181-186
30. O'Connor W.A., and Lawler N.F. Reproductive condition of the pearl oyster, Pinctada imbricata, Röding, in Port Stephens, New South Wales, Australia. Aquac. Res. 35 (2004) 385-396
31. Ogden R., and Thorpe R.S. The usefulness of amplified fragment length polymorphism markers for taxon discrimination across graduated fine evolutionary levels in Caribbean Anolis lizards. Mol. Ecol. 11 (2002) 437-445
32. Palumbi S.R. Molecular biogeography of the Pacific. Coral Reefs 16 (1997) S47-S52 (Suppl.)
33. Schneider S., Roessli D., and Excoffier L. Arlequin Version 2.000: A Software for Population Genetics Data Analysis (2000), Genetics and Biometry Laboratory, University of Geneva, Switzerland
34. Seki S., Agresti J.J., Gall G.A.E., Taniguchi N., and May B. AFLP analysis of genetic diversity in three populations of ayu (Plecoglossus altivelis). Fish. Sci. 65 (1999) 888-892
35. Slatkin M. Gene flow and the geographic structure of natural populations. Science 236 (1987) 787-792
36. Takami Y., Koshio C., Ishii M., Fujii H., Hidaka T., and Shimizu I. Genetic diversity and structure of urban populations of Pieris butterflies assessed using amplified fragment length polymorphism. Mol. Ecol. 13 (2004) 245-258
37. Uthicke S., and Benzie J.A.H. Gene flow and population history in high dispersal marine invertebrates: mitochondrial DNA analysis of Holothuria nobilis (Echinodermata: Holothuroidea) populations from the Indo-Pacific. Mol. Ecol. 12 (2003) 2635-2648
38. Vekemans X., Beauwens T., Lemaire M., and Roldan-Ruiz I. Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Mol. Ecol. 11 (2002) 139-151
39. Velayudhan T.S., Chellam S., Dharmaraj S., Victor A.C.C., and Kasim M. Comparison of growth and shell attributes of four generations of the pearl oyster Pinctada fucata (Gould) produced in the hatchery. Indian J. Fish. 43 (1996) 69-77
40. Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Frijters A., Pot J., Peleman J., Kuiper M., and Zabeau M. AFLP: a new technique for DNA fingerprinting. Nucl. Acids Res. 23 (1995) 4407-4414
41. Wang Z. Genus Pinctada Röding, 1798. In: Editorial Committee of Fauna Sinica, and Chinese Academy of Sciences (Ed). Fauna Sinica. Invertebrata vol. 31 (2002), Science Press, Beijing 68-98 (in Chinese)
42. Wang Z.Y., Tsoi K.H., and Chu K.H. Applications of AFLP technology in genetic and phylogenetic analysis of penaeid shrimp. Biochem. Syst. Ecol. 32 (2004) 399-407
43. Williams S.T., and Benzie J.A.H. Indo-west Pacific patterns of genetic differentiation in the high-dispersal star fish Linckia laevigata. Mol. Ecol. 6 (1997) 559-573
44. Yu, D.H., Chu, K.H., in press. Species identity and phylogenetic relationship of the pearl oysters in Pinctada Röding, 1798 based on ITS sequence analysis. Biochem. Syst. Ecol.
45. Zhang Q., Allen Jr. S.K., and Reece K.S. Genetic variation in wild and hatchery stocks of Suminoe oyster (Crassostrea ariakensis) assessed by PCR-RFLP and microsatellite markers. Mar. Biotechnol. 7 (2005) 588-599
46. Zhivotovsky L.A. Estimating population structure in diploids with multilocus dominant DNA markers. Mol. Ecol. 8 (1999) 907-913