Gastropod phylogeny based on six segments from four genes representing coding or non-coding and mitochondrial or nuclear DNA

Molluscan Research

Volumn 23, Issue 2, 2003, Pages 123-148

  Colgan, D J ^a   Ponder, W F ^a   Beacham, E ^a   Macaranas, J M ^a  

^a AUSTRALIAN MUSEUM   (Australia)

Author keywords

DNA sequence; Heterobranch; Multiple gene; Neritopsina; Patellogastropod

Indexed keywords

EID: 84890150032     PISSN: 13235818     EISSN: None     Source Type: Journal    
DOI: 10.1071/MR03002     Document Type: Article

References (97)

1. Bandel, K. (1982). Morphologie und Bildung der frühontogenetischen Gehäuse bei conchiferen Mollusken. Facies 7, 1-198, 6 pls.
2. Bandel, K. (1997). Higher classification and pattern of evolution of the Gastropoda. A synthesis of biological and paleontological data. Courier Forschungsinstitut Senckenberg 201, 57-81.
3. Bandel, K. (2000). The new family Cortinellidae (Gastropoda, Mollusca) connected to a review of the evolutionary history of the subclass Neritimorpha. Neues Jahrbuch für Geologie und Palaontologie Abhandlungen 217, 111-129.
4. Bandel, K., and Frýda, J. (1999). Notes on the evolution and higher classification of the subclass Neritimorpha (Gastropoda) with the description of some new taxa. Geologica et Palaeontologica 33, 219-235.
5. Bandel, K., and Geldmacher, W. (1996). The structure of the shell of Patella crenata connected with suggestions to the classification and evolution of the Archaeogastropoda. Freiberger Forschungshefte C 464, 1-71.
6. Barker, G. M. (2001). Gastropods on land: phylogeny, diversity and adaptive morphology. In 'The Biology of Terrestrial Molluscs'. (Ed. G. M. Barker.) pp. 1-146. (CABI Publishing: Wallingford, UK.)
7. Bieler R. (1992). Gastropod phylogeny and systematics. Annual Review of Ecology and Systematics 23, 311-338.
8. Boore, J. L., and Brown, W. M. (1995). Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris. Genetics 141, 305-319.
9. Brown, S., Rouse, G., Hutchings, P. A., and Colgan, D. J. (1999). Testing polychaete relationships using DNA sequence data from histone H3, U2 snRNA and 28S rDNA. Australian Journal of Zoology 47, 419-516.
10. Carlini, D. B., and Graves, J. E. (1999). Phylogenetic analysis of cytochrome c oxidase I sequences to determine higher-level relationships within the coleoid cephalopods. Bulletin of Marine Science 64, 57-76.
11. Colgan, D. J., McLauchlan, A., Wilson, G. D. F., Livingston, S. L., Edgecombe, G. D., Macaranas, J., Cassis, G., and Gray, M. R. (1998). Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution. Australian Journal of Zoology 46, 419-437.
12. Colgan, D. J., Ponder, W. F., and Eggler, P. E. (2000). Gastropod evolutionary rates and phylogenetic relationships assessed using partial 28S rDNA and histone H3 sequences. Zoologica Scripta 29, 29-63.
13. Collins, T. M., Rawlings, T. A., and Bieler, R. (2001). Learning about mechanisms of mtDNA gene-order change from the caenogastropods: major gene order change and gene order homoplasy. In 'Abstracts, World Congress of Malacology 2001, Vienna, Austria'. (Eds L. Salvini-Plawen, J., Voltzow, H. Sattmann and G. Steiner.) p. 64. (Unitas Malacologica: Vienna.) (Abstract.)
14. Dayrat, B., Tillier, A., Lecointre, G., and Tillier, S. (2001). New clades of euthyneuran gastropods (Mollusca) from 28S rRNA sequences. Molecular Phyogenetics and Evolution 19, 225-235.
15. Emery, D. G. (1992). Fine structure of the olfactory epithelia of gastropod molluscs. Microscopy Research and Technique 22, 307-324.
16. Erikson, T., and Wikström, N. (1996). 'AutoDecay', version 3.0. (Stockholm University Press: Stockholm.)
17. Felsenstein, J. (1978). Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology 27, 401-410.
18. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
19. Freeman, G., and Lundelius, J. W. (1992). Evolutionary implications of the mode of D quadrant specification in coelomates with spiral cleavage. Journal of Evolutionary Biology 5, 205-247.
20. Fretter, V., and Graham, A. (1962). 'British Prosobranch Molluscs.' (Ray Society: London.)
21. Fretter, V., Graham, A., and McLean, J. H. (1981). The anatomy of the Galapagos rift limpet, Neomphalus fretterae. Malacologia 21, 337-361.
22. Frýda, J. (1999). Higher classification of Paleozoic gastropods inferred from their early shell ontogeny. Journal of the Czech Geological Society 44, 137-154.
23. Frýda, J. (2001). On the evolution of larval development in Middle Paleozoic Gastropoda. In 'Abstracts, World Congress of Malacology 2001, Vienna, Austria'. (Eds L. Salvini-Plawen, J., Voltzow, H. Sattmann and G. Steiner.) p. 107. (Unitas Malacologica, Vienna.) (Abstract.)
24. Frýda, J., and Blodgett, R. B. (2001). The oldest known heterobranch gastropod, Kuskokwimia gen. nov., from the Early Devonian of west-central Alaska, with notes on the early phylogeny of higher gastropods. Vstník eského geologického ústavu 76, 39-54.
25. Giribet, G., and Wheeler, W. C. (2002). On bivalve phylogeny: a high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data. Invertebrate Biology, 121, 271-324.
26. Golikov, A., and Starobogatov, Y. I. (1975). Systematics of prosobranch gastropods. Malacologia 11, 185-232.
27. Graham, A. (1985). Evolution within the Gastropoda: Prosobranchia. In 'The Mollusca, Evolution'. (Eds E. R. Trueman and M. R. Clark.) pp. 151-186. (Academic Press: New York.)
28. Grande, C., Templado, J., Cevera, J. L., and Zardoya, R. (2001). Complete sequence of the mitochondrial genome of the nudibranch Roboastra europaea (Mollusca, Opisthobranchia). In 'Abstracts, World Congress of Malacology 2001, Vienna, Austria'. (Eds L. Salvini-Plawen, J., Voltzow, H. Sattmann and G. Steiner.) p. 130. (Unitas Malacologica: Vienna.) (Abstract.)
29. Graybeal, A. (1998). Is it better to add taxa or characters to a difficult phylogenetic problems? Systematic Biology 47, 9-17.
30. Guralnick, R., and Smith, K. (1999). Historical and biomechanical analysis of integration and dissociation in molluscan feeding, with special emphasis on the true limpets (Patellogastropoda: Gastropoda). Journal of Morphology 241, 175-195.
31. Guthrie, C., and Patterson, B. (1988). Spliceosomal snRNAs. Annual Review of Genetics 22, 387-419.
32. Hadfield, M. G., Strathmann, M. F., and Strathmann, R. R. (1997). Ciliary currents of non-feeding veligers in putative basal clades of gastropods. Invertebrate Biology 116, 313-321.
33. Harasewych, M. G., Adamkewicz, S. L., Blake, J. A., Saudek, S., Spriggs, T., and Bult, C. J. (1997a). Phylogeny and relationships of pleurotomariid gastropods (Mollusca: Gastropoda): an assessment based on partial 18S rDNA and cytochrome c oxidase I sequences. Molecular Marine Biology and Biotechnology 6, 1-20.
34. Harasewych, M. G., Adamkewicz, S. L., Blake, J. A., Saudek, D., Spriggs, T., and Bult, C. J. (1997b). Neogastropod phylogeny: a molecular perspective. Journal of Molluscan Studies 63, 327-351.
35. Harasewych, M. G., and McArthur, A. G. (2000). A molecular phylogeny of the Patellogastropoda (Mollusca: Gastropoda). Marine Biology 137, 183-194.
36. Hassouna, N., Michot, B., and Bachellerie, J. P. (1984). The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Research 12, 3563-3583.
37. Haszprunar, G. (1985a). The Heterobranchia: a new concept of the phylogeny and evolution of the higher Gastropoda. Zeitschrift für Zoologische Systematik und Evolutionsforschung 23, 15-37.
38. Haszprunar, G. (1985b). The fine morphology of the osphradial sense organs of the Mollusca. Part 2: Allogastropoda (Architectonicidae and Pyramidellidae). Philosophical Transactions of the Royal Society of London B 307, 497-505.
39. Haszprunar, G. (1988a). On the origin and evolution of major gastropod groups, with special reference to the Streptoneura (Mollusca). Journal of Molluscan Studies 54, 367-441.
40. Haszprunar, G. (1988b). Comparative anatomy of cocculiniform gastropods and its bearing on archaeogastropod systematics. Malacological Review Supplement 4, 64-84.
41. Haszprunar, G. (1989a). The anatomy of Melanodrymia aurantiaca Hickman, a coiled archaeogastropod from the East Pacific hydrothermal vents (Mollusca: Gastropoda). Acta Zoologica 70, 175-186.
42. Haszprunar, G. (1989b). New slit-limpets (Scissurellacea and Fissurellacea) from hydrothermal vents. Part 2. Anatomy and relationships. Los Angeles County Museum Contributions in Science 408, 1-17.
43. Haszprunar, G. (1997). Monoplacophora. In 'Microscopical Anatomy of Invertebrates'. (Eds F. W. Harrison and A. J. Kohn.) pp. 415-457. (Wiley-Liss: New York.)
44. Haszprunar, G. (1998). Superorder Cocculiniformia. In 'Mollusca: The Southern Synthesis', Fauna of Australia, Vol. 5B. (Eds P. L. Beesley, G. J. B. Ross and A. Wells.) pp. 653-664. (CSIRO Publishing: Melbourne.)
45. Haszprunar, G. (2000). Is the Aplacophora monophyletic? A cladisitic point of view. American Malacological Bulletin 15, 115-130.
46. Healy, J. M. (1993). Comparative sperm ultrastructure and spermiogenesis in basal heterobranch gastropods (Valvatoidea, Architectonicoidea, Rissoelloidea, Omalogyroidea, Pyramidelloidea) (Mollusca). Zoologica Scripta 22, 263-276.
47. Hedegaard, C., Lindberg, D. R., and Bandel, K. (1997). A patellogastropod limpet from the Triassic St. Cassian Formation of Italy. Lethaia 30, 331-335.
48. Hickman, C. S. (1988). Archaeogastropod evolution, phylogeny and systematics: a re-evaluation. Malacological Review Supplement 4, 17-34.
49. Hodgson, A. N., and Morton, B. (1998). Spermiogenesis and sperm structure in three species of Patelloida and one species of Nipponacmaea (Patellogastropoda: Acmaeoidea). Journal of Molluscan Studies 64, 11-19.
50. Huelsenbeck, J. P., and Ronquist, F. R. (2001). MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17, 754-755.
51. Israelsson, O. (1998). The anatomy of Pachydermia laevis (Archaeogastropoda: 'Peltospiridae'). Journal of Molluscan Studies 64, 93-109.
52. Künz, E., and Haszprunar, G. (2001). Comparative ultrastructure of gastropod cephalic tentacles: Patellogastropoda, Neritaemorphi and Vetigastropoda. Zoologischer Anzeiger 240, 137-165.
53. Kurabayashi, A., and Ueshima, R. (2000a). Complete sequence of the mitochondrial DNA of the primitive opisthobranch gastropod Pupa strigosa: systematic implications of the genome organisation. Molecular Biolology and Evolution 17, 266-277.
54. Kurabayashi, A., and Ueshima, R. (2000b). Partial mitochondrial genome organization of the heterostrophan gastropod Omalogyra atomus and its systematic significance. Venus 59, 7-18.
55. Lemche H., and Wingstrand K. G. (1959). The anatomy of Neopilina galatheae Lemche, 1957. Galathea Reports 3, 9-71.
56. Lindberg, D. R., and Guralnick. R. P. (2001). The evolution of early development in gastropod molluscs. In 'Abstracts, World Congress of Malacology 2001, Vienna, Austria'. (Eds L. Salvini-Plawen, J., Voltzow, H. Sattmann and G. Steiner.) p. 193. (Unitas Malacologica: Vienna.) (Abstract.)
57. Lindberg, D. R., and Ponder, W. F. (2001). The influence of classification on the evolutionary interpretation of structure: a re-evaluation of the evolution of the pallial cavity of gastropod molluscs. Organisms, Diversity and Evolution 1, 273-299.
58. Lyons-Weiler, J., and Hoelzer G. A. (1997). Escaping from the Felsenstein zone by detecting long branches in phylogenetic data. Molecular Phylogenetics and Evolution 8, 375-384.
59. Maddison, W. P., and Maddison D. R. (1992). 'MacCLADE', version 3.0. (Sinauer Associates: Sunderland, MA.)
60. McArthur, A. G., and Koop, B. F. (1999). Partial 28S rDNA sequences and the antiquity of the hydrothermal vent endemic gastropods. Molecular Phylogenetics and Evolution 13, 255-274.
61. McLean, J. H. (1981). The Galapagos rift limpet Neomphalus: relevance to understanding a major Palaeozoic-Mesozoic radiation Malacologia 21, 291-336.
62. Medina, M., Valles, Y., Gosliner, T., and Boore, J. (2001). Mitochondrial evolution of crown gastropods: insight from large subunit sequences and gene order data. In 'Abstracts, World Congress of Malacology 2001, Vienna, Austria'. (Eds L. Salvini-Plawen, J., Voltzow, H. Sattmann and G. Steiner.) p. 218. (Unitas Malacologica: Vienna.) (Abstract.)
63. Nützel, A., Erwin, D. H., and Mapes, R. H. (2000). Identity and phylogeny of the Late Paleozoic Subulitoidea (Gastropoda). Journal of Paleontology 74, 575-598.
64. Parkhaev, P. Y. (2001). The functional morphology of the Cambrian univalved molluscs: helcionellids. Paleontological Journal 35, 470-475.
65. Peel, J. S. (1991). Functional morphology, evolution and systematics of early Palaeozoic univalved molluscs. Grønlands Geologiske Undersøgelse Bulletin 161, 1-116.
66. Philippe, H., and Germot, A. (2000). Phylogeny of eukaryotes based on ribosomal RNA: long-branch attraction and models of sequence evolution. Molecular Biology and Evolution 17, 830-834.
67. Ponder W. F. (1991). Marine valvatoidean gastropods: implications for early heterobranch phylogeny. Journal of Molluscan Studies 57, 21-32.
68. Ponder, W. F., and Lindberg, D. R. (1996). Gastropod phylogeny: challenges for the '90s. In 'Origin and Evolutionary Radiation of the Mollusca'. (Ed. J. D. Taylor.) pp. 135-154. (Oxford University Press: Oxford.)
69. Ponder, W. F., and Lindberg, D. R. (1997). Towards a phylogeny of gastropod molluscs: a preliminary analysis using morphological characters. Zoological Journal of the Linnean Society 19, 83-265.
70. Ponder, W. F., and Warén, A. (1988). Classification of the Caenogastropoda and Heterostropha: a list of the family-group and higher category names. Malacological Review Supplement 4, 288-326.
71. Prager, E. M., and Wilson, A. C. (1988). Ancient origin of lactalbumin from lysozyme: analysis of DNA and amino acid sequences. Journal of Molecular Evolution 27, 326-335.
72. Rawlings, T. A., Collins, T. M., and Bieler, R. (2001). A major mitochondrial gene rearrangement among closely related species. Molecular Biology and Evolution 18, 1604-1609.
73. Rosenberg, G., Tillier, S., Tillier, A., Kuncio, G. S., Hanlon, R. T., Masselot, M., and Williams, C. J. (1997). Ribosomal RNA phylogeny of selected major clades in the Mollusca. Journal of Molluscan Studies 63, 301-309.
74. Salvini-Plawen, L. V. (1988). The structure and function of molluscan digestive systems. In 'The Mollusca. Form and Function', Vol. 11 (Eds E. R. Trueman and M. R. Clarke.) pp. 301-379. (Academic Press: Orlando, FL.)
75. Salvini-Plawen, L. V. (1990). Origin, phylogeny and classification of the phylum Mollusca. Iberus 9, 1-33.
76. Salvini-Plawen, L. V., and Haszprunar, G. (1987). The Vetigastropoda and the systematics of streptoneurous Gastropoda (Mollusca). Journal of Zoology London 211, 747-770.
77. Sasaki, T. (1998). Comparative anatomy and phylogeny of the recent Archaeogastropoda. The University of Tokyo Bulletin 38, 1-224.
78. Siddall, M. E., and Whiting, M. F. (1999). Long-branch abstractions. Cladistics 15, 9-24.
79. Stiller, J. W., and Hall, B. D. (1999). Long-branch attraction and the rDNA model of early eukaryotic evolution. Molecular Biology and Evolution 16, 1270-1279.
80. Swofford, D. L. (2000) 'PAUP*: Phylogenetic Analysis Using Parsimony', version 4.0. (Sinauer Associates: Sunderland, MA.)
81. Thiele, J. (1925). Gastropoda. Bd. 5. In 'Handbuch der Zoologie'. (Ed. T. Krumbach.) pp. 38-155. (Walter de Gruyter and Co.: Leipzig.)
82. Thiele J. (1929, 1931). 'Handbuch der systematischen Weichtierkunde', Vol. 1. (Gustav Fischer: Jena.)
83. Thollesson, M. (1999). Phylogenetic analysis of Euthyneura (Gastropoda) by means of the 16S rRNA gene: use of a 'fast' gene for 'higher-level' phylogenies. Proceedings of the Royal Society London B 266, 75-83.
84. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
85. Tillier, S., Masselot, M., Phillipe, H., and Tillier, A. (1992). Phylogénie moléculaire des Gastropoda (Mollusca) fondée sur le séquençage partiel de l'ARN ribosomique 28S. Comptes Rendus Academie de Sciences Serie III 134, 79-85.
86. Tillier, S., Masselot, M., Guerdoux, J., and Tillier, A. (1994). Monophyly of major gastropod taxa tested from partial 28S rRNA sequences, with emphasis on Euthyneura and hot-vent limpets Peltospiroidea. Nautilus 108 (Suppl. 2), 122-140.
87. van den Bigelaar, J. A. M. (1996). The significance of the early cleavage pattern for the reconstruction of gastropod phylogeny. In 'Origins and Evolutionary Radiation of the Mollusca'. (Ed. J. Tayor.) pp. 155-160. (Oxford University Press: Oxford.)
88. van den Bigelaar, J. A. M., and Haszprunar, G. (1996). Cleavage patterns and mesentoblast formation in the Gastropoda: an evolutionary perspective. Evolution 50, 1520-1540.
89. Wagner, P. J. (2001). Gastropod phylogenetics: progress, problems, and implications. Journal of Paleontology 75, 1128-1140.
90. Wagner, P. J. (2002). Phylogenetic relationships of the earliest anisostrophically coiled gastropods. Smithsonian Contributions to Paleobiology 88, 1-152.
91. Waller, T. R. (1998). Origin of the molluscan class Bivalvia and a phylogeny of major groups. In 'Bivalves: an Eon of Evolution. Paleobiological Studies Honoring Norman D. Newell'. (Eds P. A. Johnston and J. W. Haggart.) pp. 1-47. (Calgary University Press: Calgary.)
92. Wanninger, A., and Haszprunar, G. (2002). Muscle development in Antalis entalis (Mollusca, Scaphopoda) and its significance for scaphopod relationships. Journal of Morphology 254, 53-64.
93. Wanninger, A., Ruthensteiner, B., Lobenwein, S., Salvenmoser, W., Dictus, W. J. A. G., and Haszprunar, G. (1999). Development of the musculature in the limpet Patella (Mollusca, Patellogastropoda). Devlopment, Genes and Evolution 209, 226-238.
94. Wen, Y. (1990). The first radiation of shelled molluscs. Palaeontologia Cathayana 5, 139-170.
95. Widling, C. S., Mill, P. J., and Grahame, J. (1999). Partial sequence of the mitochondrial genome of Littorina saxatilis: relevance to gastropod phylogenetics. Journal of Molecular Evolution 48, 348-359.
96. Wingstrand, K. G. (1985). On the anatomy and relationships of Recent Monoplacophora. Galathea Report 16, 7-94.
97. Wirth, T., Le Guellec, R., and Veuille, M. (1999). Directional substitution and evolution of nucleotide content in the Cytochrome Oxidase II gene in earwigs (dermapteran insects). Molecular Biology and Evolution 16, 1645-1653.