-
2
-
-
48249134448
-
-
Dill, K. A., Ozkan, S. B., Shell, M. S., and Weikl, T. R., 2008. Annu Rev Biophys, 37:289–316.
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 289-316
-
-
Dill, K.A.1
Ozkan, S.B.2
Shell, M.S.3
Weikl, T.R.4
-
3
-
-
77952931294
-
-
Thirumalai, D., Brien, E. P. O., Morrison, G., and Hyeon, C., 2010. Annu Rev Biophys, 39:159–183.
-
(2010)
Annu Rev Biophys
, vol.39
, pp. 159-183
-
-
Thirumalai, D.1
Brien, E.P.O.2
Morrison, G.3
Hyeon, C.4
-
4
-
-
78649897365
-
-
Bhargavi, K., Kalyan Chaitanya, P., Ramasree, D., Vasavi, M., Murthy, D. K., and Uma, V., 2010. J Biomol Struct Dyn, 28:379–391.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 379-391
-
-
Bhargavi, K.1
Kalyan Chaitanya, P.2
Ramasree, D.3
Vasavi, M.4
Murthy, D.K.5
Uma, V.6
-
6
-
-
78649849342
-
-
Wiesner, J., Kriz, Z., Kuca, K., Jun, D., and Koca, J., 2010. J Biomol Struct Dyn, 28:393–403.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 393-403
-
-
Wiesner, J.1
Kriz, Z.2
Kuca, K.3
Jun, D.4
Koca, J.5
-
7
-
-
78649874973
-
-
Cao, Z., Liu, L., and Wang, J., 2010. J Biomol Struct Dyn, 28:343–353.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 343-353
-
-
Cao, Z.1
Liu, L.2
Wang, J.3
-
9
-
-
77956537066
-
-
Aman, M. J., Karauzum, H., Bowden, M. G., and Nguyen, T. L., 2010. J Biomol Struct Dyn, 28:1–12.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 1-12
-
-
Aman, M.J.1
Karauzum, H.2
Bowden, M.G.3
Nguyen, T.L.4
-
10
-
-
77956544501
-
-
Chang, L. K., Zhao, J. H., Liu, H. L., Wu, J. W., Chuang, C. K., Liu, K. T., Chen, J. T., Tsai, W. B., and Ho, Y., 2010. J Biomol Struct Dyn, 28:39–50.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 39-50
-
-
Chang, L.K.1
Zhao, J.H.2
Liu, H.L.3
Wu, J.W.4
Chuang, C.K.5
Liu, K.T.6
Chen, J.T.7
Tsai, W.B.8
Ho, Y.9
-
11
-
-
77956533669
-
-
Yuan, Y., Knaggs, M. H., Poole, L. B., Fetrow, J. S., and Salsbury, F. R., Jr. 2010. J Biomol Struct Dyn, 28:51–70.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 51-70
-
-
Yuan, Y.1
Knaggs, M.H.2
Poole, L.B.3
Fetrow, J.S.4
Salsbury, F.R.5
-
12
-
-
77956516916
-
-
Koshy, C., Parthiban, M., and Sowdhamini, R., 2010. J Biomol Struct Dyn, 28:71–83.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 71-83
-
-
Koshy, C.1
Parthiban, M.2
Sowdhamini, R.3
-
13
-
-
77957302449
-
-
Tao, Y., Rao, Z. H., and Liu, S. Q., 2010. J Biomol Struct Dyn, 28:143–157.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 143-157
-
-
Tao, Y.1
Rao, Z.H.2
Liu, S.Q.3
-
14
-
-
76849114370
-
-
Yu, Y., Wang, Y., He, J., Liu, Y., Li, H., Zhang, H., and Song, Y., 2010. J Biomol Struct Dyn, 27:641–649.
-
(2010)
J Biomol Struct Dyn
, vol.27
, pp. 641-649
-
-
Yu, Y.1
Wang, Y.2
He, J.3
Liu, Y.4
Li, H.5
Zhang, H.6
Song, Y.7
-
21
-
-
77957315736
-
-
Varughese, J. F., Chalovich, J. M., and Li, Y., 2010. J Biomol Struct Dyn, 28:159–173.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 159-173
-
-
Varughese, J.F.1
Chalovich, J.M.2
Li, Y.3
-
22
-
-
70350003703
-
-
Yoon, J., Jang, S., Lee, K., and Shin, S., 2009. J Biomol Struct Dyn, 27:259–269.
-
(2009)
J Biomol Struct Dyn
, vol.27
, pp. 259-269
-
-
Yoon, J.1
Jang, S.2
Lee, K.3
Shin, S.4
-
23
-
-
70349921920
-
-
Ilda, D., Giovanni, C., and Alessandro, D., 2009. J Biomol Struct Dyn, 27:307–317.
-
(2009)
J Biomol Struct Dyn
, vol.27
, pp. 307-317
-
-
Ilda, D.1
Giovanni, C.2
Alessandro, D.3
-
27
-
-
67249143457
-
-
Chang, L.-K., Zhao, J.-H., Liu, H.-L., Liu, K.-T., Chen, J.-T., Tsai, W.-B., and Ho, Y., 2009. J Biomol Struct Dyn, 26:731–740.
-
(2009)
J Biomol Struct Dyn
, vol.26
, pp. 731-740
-
-
Chang, L.-K.1
Zhao, J.-H.2
Liu, H.-L.3
Liu, K.-T.4
Chen, J.-T.5
Tsai, W.-B.6
Ho, Y.7
-
28
-
-
60849085704
-
-
Zhao, J.-H., Liu, H.-L., Liu, Y.-F., Lin, H.-Y., Fang, H.-W., Ho, Y., and Tsai, W.-B. 2009. J Biomol Struct Dyn, 26:481–490.
-
(2009)
J Biomol Struct Dyn
, vol.26
, pp. 481-490
-
-
Zhao, J.-H.1
Liu, H.-L.2
Liu, Y.-F.3
Lin, H.-Y.4
Fang, H.-W.5
Ho, Y.6
Tsai, W.-B.7
-
29
-
-
66949159146
-
-
Fang, P.-S., Zhao, J.-H., Liu, H.-L., Liu, K.-T., Chen, J.-T., Lin, H.-Y., Huang, C.-H., and Fang, H.-W., 2009. J Biomol Struct Dyn, 26:549–559.
-
(2009)
J Biomol Struct Dyn
, vol.26
, pp. 549-559
-
-
Fang, P.-S.1
Zhao, J.-H.2
Liu, H.-L.3
Liu, K.-T.4
Chen, J.-T.5
Lin, H.-Y.6
Huang, C.-H.7
Fang, H.-W.8
-
30
-
-
60849086469
-
-
Sunilkumar, P. N., Nair, D. G., Sadasivan, C., and Haridas, M., 2009. J Biomol Struct Dyn, 26:491–496.
-
(2009)
J Biomol Struct Dyn
, vol.26
, pp. 491-496
-
-
Sunilkumar, P.N.1
Nair, D.G.2
Sadasivan, C.3
Haridas, M.4
-
31
-
-
67650439243
-
-
Bairagya, H. R., Mukhopadhyay, B. P., and Sekar, K., 2009. J Biomol Struct Dyn, 27:149–158.
-
(2009)
J Biomol Struct Dyn
, vol.27
, pp. 149-158
-
-
Bairagya, H.R.1
Mukhopadhyay, B.P.2
Sekar, K.3
-
33
-
-
66149106241
-
-
Patargias, G., Martay, H., and Fischer, W. B., 2009. J Biomol Struct Dyn, 27:1–12.
-
(2009)
J Biomol Struct Dyn
, vol.27
, pp. 1-12
-
-
Patargias, G.1
Martay, H.2
Fischer, W.B.3
-
34
-
-
77957298312
-
-
Mittal, A., Jayaram, B., Shenoy, S., and Bawa, T. S., 2010. J Biomol Struc Dyn, 28:133–142.
-
(2010)
J Biomol Struc Dyn
, vol.28
, pp. 133-142
-
-
Mittal, A.1
Jayaram, B.2
Shenoy, S.3
Bawa, T.S.4
-
39
-
-
52249085488
-
-
Snow, C. D., Nguyen, H., Pande, V. S., and Gruebele, M., 2002. Nature, 20:1–3.
-
(2002)
Nature
, vol.20
, pp. 1-3
-
-
Snow, C.D.1
Nguyen, H.2
Pande, V.S.3
Gruebele, M.4
-
43
-
-
2942590388
-
-
Hubner, A., Oliveberg, M., and Shakhnovich, E., 2004. Proc Natl Acad Sci USA, 101:8354–8359.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 8354-8359
-
-
Hubner, A.1
Oliveberg, M.2
Shakhnovich, E.3
-
44
-
-
0347357617
-
-
Dobson, C. M., 2003. Nature, 426:884–890.
-
(2003)
Nature
, vol.426
, pp. 884-890
-
-
Dobson, C.M.1
-
47
-
-
0028802181
-
-
Agashe, V. R., Shastry, M. C., and Udgaonkar, J. B., 1995. Nature, 377:754–757.
-
(1995)
Nature
, vol.377
, pp. 754-757
-
-
Agashe, V.R.1
Shastry, M.C.2
Udgaonkar, J.B.3
-
49
-
-
33745194016
-
-
Brylinski, M., Konieczny, L., and Roterman, I., 2006. Comput Biol Chem, 30:255–67.
-
(2006)
Comput Biol Chem
, vol.30
, pp. 255-267
-
-
Brylinski, M.1
Konieczny, L.2
Roterman, I.3
-
52
-
-
0032544002
-
-
Duan, Y., Wang, L., and Kollman, P. A., 1998. Proc Natl Acad Sci U S A, 95:9897–902.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 9897-9902
-
-
Duan, Y.1
Wang, L.2
Kollman, P.A.3
-
53
-
-
0032502839
-
-
Plaxco, K. W., Simons, K. T., and Baker, D., 1998. J Mol Biol, 277:985–94.
-
(1998)
J Mol Biol
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
55
-
-
77957937199
-
-
Shaw, D. E., Maragakis, P., Lindorff-Larsen, K., Piana, S., Dror, R. O., Eastwood, M. P., Bank, J. A., Jumper, J. M., Salmon, J. K., Shan, Y., and Wriggers, W., 2010. Science, 330:341–346.
-
(2010)
Science
, vol.330
, pp. 341-346
-
-
Shaw, D.E.1
Maragakis, P.2
Lindorff-Larsen, K.3
Piana, S.4
Dror, R.O.5
Eastwood, M.P.6
Bank, J.A.7
Jumper, J.M.8
Salmon, J.K.9
Shan, Y.10
Wriggers, W.11
-
56
-
-
76149136021
-
-
Voelz, V. A., Bowman, G. R., Beauchamp, K., and Pande, V. S., 2010. J Am Chem Soc, 132:1526–1528.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 1526-1528
-
-
Voelz, V.A.1
Bowman, G.R.2
Beauchamp, K.3
Pande, V.S.4
-
57
-
-
0036428782
-
-
Zagrovic, B., Snow, C. D., Shirts, M. R., and Pande, V. S., 2002. J Mol Biol, 323:927–937.
-
(2002)
J Mol Biol
, vol.323
, pp. 927-937
-
-
Zagrovic, B.1
Snow, C.D.2
Shirts, M.R.3
Pande, V.S.4
-
58
-
-
0032443390
-
-
Dokholyan, N. V., Buldyrev, S. V., Stanley, H. E., and Shakhnovich, E. I., 1998. Fold Des, 3:577–587.
-
(1998)
Fold Des
, vol.3
, pp. 577-587
-
-
Dokholyan, N.V.1
Buldyrev, S.V.2
Stanley, H.E.3
Shakhnovich, E.I.4
-
60
-
-
79958822553
-
-
Suenaga. 1998. THEOCHEM, 634:235–241.
-
(1998)
THEOCHEM
, vol.634
, pp. 235-241
-
-
Suenaga1
-
63
-
-
84985740872
-
-
McCammon, J. A., Northrup, S. H., Karplus, M., and Levy, R. M., 1984. Biopolymers, 19:2033–2045.
-
(1984)
Biopolymers
, vol.19
, pp. 2033-2045
-
-
McCammon, J.A.1
Northrup, S.H.2
Karplus, M.3
Levy, R.M.4
-
64
-
-
0035132230
-
-
Atilgan, A. R., Durell, S. R., Jernigan, R. L., Demirel, M. C., Keskin, O., and Bahar, I., 2001. Biophys J, 80:505–515.
-
(2001)
Biophys J
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Jernigan, R.L.3
Demirel, M.C.4
Keskin, O.5
Bahar, I.6
-
65
-
-
77950477912
-
-
Maisuradze, G. G., Senet, P., Czaplewski, C., Liwo, A., and Scheraga, H. A., 2010. J Phys Chem A, 114:4471–4485.
-
(2010)
J Phys Chem A
, vol.114
, pp. 4471-4485
-
-
Maisuradze, G.G.1
Senet, P.2
Czaplewski, C.3
Liwo, A.4
Scheraga, H.A.5
-
66
-
-
33746347382
-
-
Yang, L., Tan, C. H., Hsieh, M. J., Wang, J., Duan, Y., Cieplak, P., Caldwell, J., Kollman, P. A., and Luo, R., 2006. J Phys Chem B, 110:13166–13176.
-
(2006)
J Phys Chem B
, vol.110
, pp. 13166-13176
-
-
Yang, L.1
Tan, C.H.2
Hsieh, M.J.3
Wang, J.4
Duan, Y.5
Cieplak, P.6
Caldwell, J.7
Kollman, P.A.8
Luo, R.9
-
71
-
-
0008501653
-
-
McKnight, C. J., Doering, D. S., Matsudaira, P. T., and Kim, P. S., 1996. J Mol Biol, 260:126–34.
-
(1996)
J Mol Biol
, vol.260
, pp. 126-134
-
-
McKnight, C.J.1
Doering, D.S.2
Matsudaira, P.T.3
Kim, P.S.4
-
72
-
-
0031058410
-
-
McKnight, C. J., Matsudaira, P. T., and Kim, P. S., 1997. Nat Struct Biol, 4:180–4.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 180-184
-
-
McKnight, C.J.1
Matsudaira, P.T.2
Kim, P.S.3
-
73
-
-
0038054301
-
-
Kubelka, J., Eaton, W. A., and Hofrichter, J., 2003. J Mol Biol, 329:625–30.
-
(2003)
J Mol Biol
, vol.329
, pp. 625-630
-
-
Kubelka, J.1
Eaton, W.A.2
Hofrichter, J.3
-
74
-
-
19644381706
-
-
Chiu, T. K., Kubelka, J., Herbst-Irmer, R., Eaton, W. A., Hofrichter, J., and Davies, D. R., 2005. Proc Natl Acad Sci U S A, 102:7517–7522.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 7517-7522
-
-
Chiu, T.K.1
Kubelka, J.2
Herbst-Irmer, R.3
Eaton, W.A.4
Hofrichter, J.5
Davies, D.R.6
-
75
-
-
70349976318
-
-
Vugmeyster, L., Ostrovsky, D., Ford, J. J., Burton, S. D., Lipton, A. S., Hoatson, G. L., and Vold, R. L., 2009. J Am Chem Soc, 131:13651–8.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 13651-13658
-
-
Vugmeyster, L.1
Ostrovsky, D.2
Ford, J.J.3
Burton, S.D.4
Lipton, A.S.5
Hoatson, G.L.6
Vold, R.L.7
-
76
-
-
0038288925
-
-
Wang, M., Tang, Y., Sato, S., Vugmeyster, L., McKnight, C. J., and Raleigh, D. P., 2003. J Am Chem Soc, 125:6032–3.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 6032-6033
-
-
Wang, M.1
Tang, Y.2
Sato, S.3
Vugmeyster, L.4
McKnight, C.J.5
Raleigh, D.P.6
-
77
-
-
67749130727
-
-
Meng, W., Shan, B., Tang, Y., and Raleigh, D. P., 2009. Protein Sci, 18:1692–701.
-
(2009)
Protein Sci
, vol.18
, pp. 1692-1701
-
-
Meng, W.1
Shan, B.2
Tang, Y.3
Raleigh, D.P.4
-
78
-
-
72449198627
-
-
Lee, I. H., Kim, S. Y., and Lee, J., 2010. J Comput Chem, 31:57–65.
-
(2010)
J Comput Chem
, vol.31
, pp. 57-65
-
-
Lee, I.H.1
Kim, S.Y.2
Lee, J.3
-
80
-
-
52249099484
-
-
Sonavane, U. B., Ramadugu, S. K., and Joshi, R. R., 2008. J Biomol Struct Dyn, 26:203–14.
-
(2008)
J Biomol Struct Dyn
, vol.26
, pp. 203-214
-
-
Sonavane, U.B.1
Ramadugu, S.K.2
Joshi, R.R.3
-
83
-
-
34247639441
-
-
Lei, H., Wu, C., Liu, H., and Duan, Y., 2007. Proc Natl Acad Sci U S A, 104:4925–4930.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 4925-4930
-
-
Lei, H.1
Wu, C.2
Liu, H.3
Duan, Y.4
-
85
-
-
35648943228
-
-
Ensign, D. L., Kasson, P. M., and Pande, V. S., 2007. J Mol Biol, 374:806–16.
-
(2007)
J Mol Biol
, vol.374
, pp. 806-816
-
-
Ensign, D.L.1
Kasson, P.M.2
Pande, V.S.3
-
86
-
-
54849428346
-
-
Lei, H., Deng, X., Wang, Z., and Duan, Y., 2008. J Chem Phys, 129:155104
-
(2008)
J Chem Phys
, vol.129
, pp. 155104
-
-
Lei, H.1
Deng, X.2
Wang, Z.3
Duan, Y.4
-
88
-
-
77953508894
-
-
Day, R., Paschek, D., and Garcia, A. E., 2010. Proteins, 78:1889–99.
-
(2010)
Proteins
, vol.78
, pp. 1889-1899
-
-
Day, R.1
Paschek, D.2
Garcia, A.E.3
-
89
-
-
0030967896
-
-
Guo, Z., Brooks, C. L., III and Boczko, E. M., 1997. Proc Natl Acad Sci USA, 94:10161–10166.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 10161-10166
-
-
Guo, Z.1
Brooks, C.L.2
Boczko, E.M.3
-
90
-
-
0345724787
-
-
Jang, S., Kim, E., Shin, S., and Pak, Y., 2003. J Am Chem Soc, 125:14841–6.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 14841-14846
-
-
Jang, S.1
Kim, E.2
Shin, S.3
Pak, Y.4
-
91
-
-
41949100049
-
-
Chen, J., Brooks, C. L., III and Khandogin, J., 2008. Curr Opin Struct Biol, 18 (2):140–148.
-
(2008)
Curr Opin Struct Biol
, vol.18
, Issue.2
, pp. 140-148
-
-
Chen, J.1
Brooks, C.L.2
Khandogin, J.3
-
92
-
-
46749105987
-
-
Shell, M. S., Ritterson, R., and Dill, K. A., 2008. J Phys Chem B, 112:6878–86.
-
(2008)
J Phys Chem B
, vol.112
, pp. 6878-6886
-
-
Shell, M.S.1
Ritterson, R.2
Dill, K.A.3
-
93
-
-
85023912683
-
-
Case, D. A., Darden, T. A., Cheatham, T. E., III, Simmerling, C. L., Wang, J., Duke, R. E., Luo, R., Crowley, M., Walker, Ross C., Zhang, W., Merz, K. M., Wang, B., Hayik, S., Roitberg, A., Seabra, G., Kolossváry, I., Wong, K. F., Paesani, F., Vanicek, J., Wu, X., Brozell, S. R., Steinbrecher, T., Gohlke, H., Yang, L., Tan, C., Mongan, J., Hornak, V., Cui, G., Mathews, D. H., Seetin, M. G., Sagui, C., Babin, V., and Kollman, P. A., 2008.
-
(2008)
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Crowley, M.8
Walker, R.C.9
Zhang, W.10
Merz, K.M.11
Wang, B.12
Hayik, S.13
Roitberg, A.14
Seabra, G.15
Kolossváry, I.16
Wong, K.F.17
Paesani, F.18
Vanicek, J.19
Wu, X.20
Brozell, S.R.21
Steinbrecher, T.22
Gohlke, H.23
Yang, L.24
Tan, C.25
Mongan, J.26
Hornak, V.27
Cui, G.28
Mathews, D.H.29
Seetin, M.G.30
Sagui, C.31
Babin, V.32
Kollman, P.A.33
more..
-
97
-
-
0029878720
-
-
Humphrey, W., Dalke, A., and Schulten, K., 1996. JMolec Graphics, 14:33–38. http://www.ks.uiuc.edu/Research/vmd/
-
(1996)
JMolec Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
98
-
-
85023919087
-
-
Plotmtv. http://hammersmith-consulting.com/plotmtv-us-g.html
-
-
-
-
99
-
-
85023934588
-
-
XMGRACE:. http://plasma-gate.weizmann.ac.il/Grace/
-
-
-
-
100
-
-
38349093284
-
-
(2):024103
-
Sindhikara, D., Meng, Y., and Roitberg, A. E., 2008. J Chem Phys, 14:128 (2):024103
-
(2008)
J Chem Phys
, vol.14
, pp. 128
-
-
Sindhikara, D.1
Meng, Y.2
Roitberg, A.E.3
-
101
-
-
57749191492
-
-
Maisuradze, G. G., Liwo, A., and Scheraga, H. A., 2009. J Mol Biol, 385:312–29.
-
(2009)
J Mol Biol
, vol.385
, pp. 312-329
-
-
Maisuradze, G.G.1
Liwo, A.2
Scheraga, H.A.3
-
102
-
-
11344285181
-
-
De Mori, G. M., Colombo, G., and Micheletti, C., 2005. Proteins, 58:459–71.
-
(2005)
Proteins
, vol.58
, pp. 459-471
-
-
De Mori, G.M.1
Colombo, G.2
Micheletti, C.3
|