Molecular dynamics studies on troponin (tnl-tnt-tnc) complexes: Insight into the regulation of muscle contraction

Journal of Biomolecular Structure and Dynamics

Volumn 28, Issue 2, 2010, Pages 159-173

  Varughese, Jayson F ^a   Chalovich, Joseph M ^b   Lit, Yumin ^a  

^a Department of Chemistry ^*  (United States)

^b EAST CAROLINA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM ION; TROPONIN C; TROPONIN I; TROPONIN T;

ACTIN MYOSIN INTERACTION; ARTICLE; BINDING SITE; CALCIUM BINDING; GENE MUTATION; HEART MUSCLE; MOLECULAR DYNAMICS; MOLECULAR MECHANICS GENERALIZED BORN SURFACE AREA TECHNIQUE; MUSCLE CONTRACTION; PRIORITY JOURNAL; PROTEIN DOMAIN; SIMULATION; SKELETAL MUSCLE; TECHNIQUE;

ANIMALS; HUMANS; MODELS, MOLECULAR; MOLECULAR DYNAMICS SIMULATION; MULTIPROTEIN COMPLEXES; MUSCLE CONTRACTION; TROPONIN C; TROPONIN I; TROPONIN T;

EID: 77957315736     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2010.10507350     Document Type: Article

References (50)

1. Li, M. X., Wang, X., and Sykes, B. D., 2004. J Mus Res and Cell Mot, 25:559–579.
2. Davis, J. P., and Tikunova, S. B., 2008. Cardiovascular Res, 77:619–626.
3. Gomes, A., and Potter, J., 2004. Ann N Y Acad Sci, 1015:214–224.
4. Robinson, P., Lipscomb, S., Preston, L. C., Altin, E., Watkins, H., Ashley, C. C., and Redwood, C. S., 2007. FASEB J, 21:896–905.
5. Leblanc, L., Bennet, A., and Borgford, T., 2000. Arch Biochem and Physics, 384:296–304.
6. Kimber, E., Tajsharghi, H., Kroksmark, A. K., Oldfors, A., and Tulinius, M., 2006. Neurology, 67:597–601.
7. Braun, G. H., Jorge, D. M. M., Ramos, H. P., Alves, R. M., da Silva, V. B., Giuliatti, S., Sampaio, S. V., Taft, C. A., and Silva, H. T. P., 2008. J Biomol Struct Dyn, 25:347–346.
8. Yoon, J., Park, J., Jang, S., Lee, K., and Shin, S., 2008. J Biomol Struct Dyn, 25:505–516.
9. Cordomí, A., Ramon, E., Garriga, P., and Perez, J. J., 2008. J Biomol Struct Dyn, 25:573–588.
10. Chen, C. Y-C., Chen, Y-F., Wu, C-H, and Tsai, H-Y., 2008. J Biomol Struct Dyn, 26:57–64.
11. Zhao, J-H., Yang, C-T., Wu, J. W., Tsai, W-B., Lin, H-Y, Fang, H-W., Ho, Y., and Liu, H-L., 2008. J Biomol Struct Dyn, 26:65–74.
12. Macchion, B. N., Strömberg, R., and Nilsson, L., 2008. J Biomol Struct Dyn, 26:163–174.
13. Sonavane, U. B., Ramadugu, S. K., and Joshi, R. R., 2008. J Biomol Struct Dyn, 26:203–214.
14. Mehrnejad, F., and Chaparzadeh, N., 2008. J Biomol Struct Dyn, 26:255–262.
15. Yoon, J., Jang, S., Lee, K., and Shin, S., 2009. J Biomol Struct Dyn, 27:259–270.
16. Ilda, D., Giovanni, C., and Alessandro, D., 2009. J Biomol Struct Dyn, 27:307–318.
17. Cordomí, A., and Perez, J. J., 2009. J Biomol Struct Dyn, 27:127–148.
18. Bairagya, H. R., Mukhopadhyay, B. P., and Sekar, K., 2009. J Biomol Struct Dyn, 27:149–158.
19. Zhang, J., 2009. J Biomol Struct Dyn, 27:159–162.
20. Lim, C. C., Yang, H., Yang, M., Wang, C., Shi, J., Berg, E. A., Pimentel, D. R., Gwathmey, J. K., Hajjar, R. J., Helmes, M. C., Costello, E., Huo, S., and Liao, R., 2008. Biophys J, 94:3577–3589.
21. Goto, K., Toyama, A., Takeuchi, H., Takayama, K., Saito, T., Iwamoto, M., Yeh, J. Z., and Narahashi, T., 2004. FEBS Letters, 561:51–57.
22. Ertz-Berger, B. R., He, H., Dowell, C., Factor, S. M., Haim, T. E., Nunez, S., Schwartz, S. D., Ingwall, J. S., and Tardiff, J. C., 2005. Proc Natl Acad Sci USA, 102:18219–18224.
23. Vinodgradova, M. V., Stone, D. B., Malanina, G. G., Karatzaferi, C., Cooke, R., Mendelson, R. A., and Fletterick, R. J., 2005. Proc Natl Acad Sci USA, 102:5038–5043.
24. Takeda, S., Yamashita, A., and Maeda, Y., 2003. Nature, 424:35–41.
25. Baker, D., and Sali, A., 2001. Science, 294:93–96.
26. Roitberg, A., and Elber, R. J., 1991. Chem Phys, 95:9277–9287.
27. Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., and Klein, M. L. J., 1983. Chem Phys, 79:926–935.
28. Case, D. A., Cheatham, T. E., Darden, T., Gohlke, H., Luo, R., Merz, K. M., and et al. 2005. J Comp Chem, 26:1668–1688.
29. Kim, K., and Jordan, K. D., 1994. J Phys Chem, 98:10089–10094.
30. Toukmaji, A., Sagui, C., Board, J., and Darden, T., 2000. J Chem Phys, 113:10913–10927.
31. Essmann, U., Perera, L., Berkowitz, M. L., Darden, T., Lee, H., and Pedersen, L. G., 1995. J Chem Phys, 103:8577–8593.
32. Crowley, M. F., Darden, T. A., Cheatham, T. E., III and Deerfield, D. W., II. 1997. J Supercomp, 11:255–278.
33. Ryckaert, J. P., Ciccotti, G., and Berendsen, H. J. C., 1977. J Comput Phys, 23:327–341.
34. Ichiye, T., and Karplus, M., 1991. Prot Struct Funct Genet, 11:205–217.
35. Karplus, M., and Ichiye, T., 1996. J Mol Biol, 263:120–122.
36. Dweck, D., Hus, N., and Potter, J. D., 2008. J Biol Chem, 283:33119–33128.
37. Grabarek, Z., Drabikiwoski, W., Leavis, P. C., Rosenfeld, S. S., and Gergely, J., 1981. J Biol Chem, 256:13121–13127.
38. Swenson, C. A., and Fredricksen, R. S., 1992. Biochemistry, 31:3420–3429.
39. Ramakrishnan, S., and Hitchcock-DeGregori, S. E., 1995. Biochemistry, 34:16789–16796.
40. van Eerd, J. P., and Takahashi, K., 1975. Biochem Biohphys Res Comm, 64:122–127.
41. Wang, S., George, S. E., Davis, J. P., and Johnson, J. D., 1998. Biochemistry, 37:14539–14544.
42. Putkey, J. A., Sweeney, H. L., and Campbell, S. T., 1989. J Biol Chem, 264:12370–12378.
43. Babu, A., Su, H., and Gulati, J., 1993. Adv Exp Med Biol, 332:125–131.
44. Gifford, J. L., Walsh, M. P., and Vogel, H. J., 2007. Biochem J, 405:199–221.
45. Recce, K. L., and Moss, R. L., 2008. Biochemistry, 47:5139–5146.
46. Gafurov, B., Fredricksen, S., Cai, A., Brenner, B., Chase, P. B., and Chalovich, J. M., 2004. Biochemistry, 43:15276–15285.
47. Mathur, M. C., Kobayashi, T., and Chalovich, J. M., 2009. Biophys J, 96:2237–2244.
48. Mathur, M. C., Kobayashi, T., and Chalovich, J. M., 2008. Biophys J, 94:542–549.
49. Tobacman, L. S., 1996. Ann Rev Physiol, 58:447–481.
50. Mukhopadhyay, S., Langsetmo, K., Stafford, W. F., Henry, G. D., Baleja, J. D., and Sarkar, S., 2005. J Biol Chem, 280:538–547.