-
1
-
-
84986512474
-
-
Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan. S.; Karplus, M. J. Comput. Chem. 1983, 4, 187.
-
(1983)
J. Comput. Chem
, vol.4
, pp. 187
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
2
-
-
0029633186
-
-
Pearlman, D. A.; Case, D. A.; Caldwell, J. W.; Ross, W. S.; Cheatham III, T. E.; Debolt, S.; Ferguson, D.; Seibel, G.; Kollman, P. Comput. Phys. Commun. 1995, 97, 1.
-
(1995)
Comput. Phys. Commun
, vol.97
, pp. 1
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham III, T.E.5
Debolt, S.6
Ferguson, D.7
Seibel, G.8
Kollman, P.9
-
3
-
-
23444454552
-
-
Case, D. A.; Cheatham, T. E.; Darden, T.; Gohlke, H.; Luo, R.; Merz, K. M.; Onufriev, A.; Simmerling, C.; Wang, B.; Woods, R. J. J. Comput. Chem 2005, 26, 1668.
-
(2005)
J. Comput. Chem
, vol.26
, pp. 1668
-
-
Case, D.A.1
Cheatham, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz, K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
6
-
-
0344304436
-
-
Vila, J. A.; Ripoll, D. R.; Scheraga, H. A. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 14812.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A
, vol.100
, pp. 14812
-
-
Vila, J.A.1
Ripoll, D.R.2
Scheraga, H.A.3
-
7
-
-
0036428782
-
-
Zagrovic, B.; Snow, C. D.; Shirts, M. R.; Pande, V. S. J. Mol. Biol. 2002, 323, 927.
-
(2002)
J. Mol. Biol
, vol.323
, pp. 927
-
-
Zagrovic, B.1
Snow, C.D.2
Shirts, M.R.3
Pande, V.S.4
-
8
-
-
33748248896
-
-
Jayachandran, G.; Vishal, V.; Pande, V. S. J. Chem. Phys. 2006, 124, 164902.
-
(2006)
J. Chem. Phys
, vol.124
, pp. 164902
-
-
Jayachandran, G.1
Vishal, V.2
Pande, V.S.3
-
10
-
-
34247639441
-
-
Lei, H.; Wu, C.; Liu, H.; Duan, Y. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 4925.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 4925
-
-
Lei, H.1
Wu, C.2
Liu, H.3
Duan, Y.4
-
11
-
-
0037174385
-
-
Simmerling, C.; Strockbine, B.; Roitberg, A. E. J. Am. Chem. Soc. 2002, 124, 11258.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 11258
-
-
Simmerling, C.1
Strockbine, B.2
Roitberg, A.E.3
-
13
-
-
0037470691
-
-
Chowdhury, S.; Lee, M. C.; Xiong, G.; Duan, Y. J. Mol. Biol. 2003, 327, 711.
-
(2003)
J. Mol. Biol
, vol.327
, pp. 711
-
-
Chowdhury, S.1
Lee, M.C.2
Xiong, G.3
Duan, Y.4
-
15
-
-
34547551805
-
-
Ozkan, S. B.; Wu, G. H. A.; Chodera, J. D.; Dill, K. A. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 11987.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 11987
-
-
Ozkan, S.B.1
Wu, G.H.A.2
Chodera, J.D.3
Dill, K.A.4
-
17
-
-
1442287309
-
-
Yoda, T.; Sugita, Y.; Okamoto, Y. Chem. Phys. Lett. 2004, 386, 460.
-
(2004)
Chem. Phys. Lett
, vol.386
, pp. 460
-
-
Yoda, T.1
Sugita, Y.2
Okamoto, Y.3
-
18
-
-
8644224198
-
-
Yoda, T.; Sugita, Y.; Okamoto, Y. Chem. Phys. 2004, 307, 269.
-
(2004)
Chem. Phys
, vol.307
, pp. 269
-
-
Yoda, T.1
Sugita, Y.2
Okamoto, Y.3
-
22
-
-
0141704162
-
-
Zhou, R. Proteins 2003, 53, 148.
-
(2003)
Proteins
, vol.53
, pp. 148
-
-
Zhou, R.1
-
23
-
-
3042801661
-
-
Felts, A. K.; Harano, Y.; Gallicchio, E.; Levy, R. M. Proteins 2004, 56, 310.
-
(2004)
Proteins
, vol.56
, pp. 310
-
-
Felts, A.K.1
Harano, Y.2
Gallicchio, E.3
Levy, R.M.4
-
25
-
-
33749605193
-
-
Lwin, T. Z.; Zhong, R.; Luo, R. J. Chem. Phys. 2006, 124, 034902.
-
(2006)
J. Chem. Phys
, vol.124
, pp. 034902
-
-
Lwin, T.Z.1
Zhong, R.2
Luo, R.3
-
26
-
-
0028500779
-
-
Blanco, F. J.; Rivas, G.; Serrano, L. Nat. Struct. Biol. 1994, 1, 584.
-
(1994)
Nat. Struct. Biol
, vol.1
, pp. 584
-
-
Blanco, F.J.1
Rivas, G.2
Serrano, L.3
-
27
-
-
0028950079
-
-
Scholtz, J. M.; Barrick, D.; York, E. J.; Stewart, J. M.; Baldwin, R. L. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 185.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A
, vol.92
, pp. 185
-
-
Scholtz, J.M.1
Barrick, D.2
York, E.J.3
Stewart, J.M.4
Baldwin, R.L.5
-
28
-
-
0020119906
-
-
Bierzynski, A.; Kim, P. S.; Baldwin, R. L. Proc. Natl. Acad. Sci. U.S.A. 1982, 79, 2470.
-
(1982)
Proc. Natl. Acad. Sci. U.S.A
, vol.79
, pp. 2470
-
-
Bierzynski, A.1
Kim, P.S.2
Baldwin, R.L.3
-
29
-
-
0035826776
-
-
Cochran, A. G.; Skelton, N. J.; Starovasnik, M. A. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 5578.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A
, vol.98
, pp. 5578
-
-
Cochran, A.G.1
Skelton, N.J.2
Starovasnik, M.A.3
-
30
-
-
0029011701
-
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179.
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 5179
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
31
-
-
0002098417
-
-
Systems; Van Gunsteren, W. F, Weiner, P. K, Eds, Escom: Dodrecht, Netherlands
-
Kollman, P. A.; Dixon, R.; Cornell, W.; Fox, T.; Chipot, C.; Pohorille, A. The development/application of "minimalist" organic/biochemical molecular mechanic force field using a combination of ab initio calculations and experimental data In Computer Simulation of Biomolecular Systems; Van Gunsteren, W. F., Weiner, P. K., Eds.; Escom: Dodrecht, Netherlands, 1997; pp 83-96.
-
(1997)
The development/application of minimalist
, pp. 83-96
-
-
Kollman, P.A.1
Dixon, R.2
Cornell, W.3
Fox, T.4
Chipot, C.5
Pohorille, A.6
-
32
-
-
0001398008
-
-
Wang, J.; Cieplak, P.; Kollman, P. A. J. Comput. Chem. 2000, 21, 1049.
-
(2000)
J. Comput. Chem
, vol.21
, pp. 1049
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
33
-
-
33748518255
-
-
Hornak, V.; Abel, R.; Okur, A.; Strockbine, B.; Roitberg, A.; Simmerling, C. Proteins 2006, 65, 712.
-
(2006)
Proteins
, vol.65
, pp. 712
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
34
-
-
0242663237
-
-
Duan, Y.; Wu, C.; Chowdhury, S.; Lee, M. C.; Xiong, G.; Zhang, W.; Yang, R.; Cieplak, P.; Luo, R.; Lee, T. J. Comput. Chem. 2003, 24, 1999.
-
(1999)
J. Comput. Chem
, vol.2003
, pp. 24
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.5
Zhang, W.6
Yang, R.7
Cieplak, P.8
Luo, R.9
Lee, T.10
-
37
-
-
0344778061
-
-
Still, W. C.; Tempczyk, A.; Hawley, R. C.; Hendrickson, T. J. Am. Chem. Soc. 1990, 112, 6127.
-
(1990)
J. Am. Chem. Soc
, vol.112
, pp. 6127
-
-
Still, W.C.1
Tempczyk, A.2
Hawley, R.C.3
Hendrickson, T.4
-
38
-
-
0037110472
-
-
Onufriev, A.; Case, D. A.; Bashford, D. J. Comput. Chem. 2002, 23, 1297.
-
(2002)
J. Comput. Chem
, vol.23
, pp. 1297
-
-
Onufriev, A.1
Case, D.A.2
Bashford, D.3
-
39
-
-
20644449471
-
-
Onufriev, A.; Bashford, D.; Case, D. A. J. Phys. Chem. B 2000, 104, 37112.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 37112
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
41
-
-
0002636134
-
-
Hawkins, G. D.; Cramer, C. J.; Truhlar, D. G. Chem. Phys. Lett. 1995, 246, 122.
-
(1995)
Chem. Phys. Lett
, vol.246
, pp. 122
-
-
Hawkins, G.D.1
Cramer, C.J.2
Truhlar, D.G.3
-
43
-
-
1842479952
-
-
Onufriev, A.; Bashford, D.; Case, D. A. Proteins 2004, 55, 383.
-
(2004)
Proteins
, vol.55
, pp. 383
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
44
-
-
0346971105
-
-
Feig, M.; Onufriev, A.; Lee, M. S.; Im, W.; Case, D. A.; Brooks, C. L. J. Comput. Chem. 2004, 25, 265.
-
(2004)
J. Comput. Chem
, vol.25
, pp. 265
-
-
Feig, M.1
Onufriev, A.2
Lee, M.S.3
Im, W.4
Case, D.A.5
Brooks, C.L.6
-
45
-
-
33847713183
-
-
Mongan, J.; Simmerling, C. L.; McCammon, J. A.; Case, D. A.; Onufriev, A. J. Chem. Theory Comput. 2007, 3, 156.
-
(2007)
J. Chem. Theory Comput
, vol.3
, pp. 156
-
-
Mongan, J.1
Simmerling, C.L.2
McCammon, J.A.3
Case, D.A.4
Onufriev, A.5
-
47
-
-
34247382025
-
-
Chodera, J.; Swope, W. C.; Pitera, J. W.; Dill, K. A. Multiscale Model. Simul. 2006, 5, 1214.
-
(2006)
Multiscale Model. Simul
, vol.5
, pp. 1214
-
-
Chodera, J.1
Swope, W.C.2
Pitera, J.W.3
Dill, K.A.4
-
48
-
-
0029878720
-
-
Humphrey, W.; Dalke, A.; Schulten, K. J. Mol. Graphics 1996, 14, 33.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
49
-
-
84986519238
-
-
Kumar, S.; Bouzida, D.; Swendsen, R. H.; Kollman, P. A.; Rosenberg, J. M. J. Comput. Chem. 1992, 13, 1011.
-
(1992)
J. Comput. Chem
, vol.13
, pp. 1011
-
-
Kumar, S.1
Bouzida, D.2
Swendsen, R.H.3
Kollman, P.A.4
Rosenberg, J.M.5
-
52
-
-
33745960026
-
-
Geney, R.; Layten, M.; Gomperts, R.; Hornak, V.; Simmerling, C. J. Chem. Theory Comput. 2006, 2, 115.
-
(2006)
J. Chem. Theory Comput
, vol.2
, pp. 115
-
-
Geney, R.1
Layten, M.2
Gomperts, R.3
Hornak, V.4
Simmerling, C.5
|