Bacterial tubulin distinct loop sequences and primitive assembly properties support its origin from a eukaryotic tubulin ancestor

Journal of Biological Chemistry

Volumn 286, Issue 22, 2011, Pages 19789-19803

  Martin Galiano, Antonio J ^a   Oliva, María A ^a   Sanz, Laura ^a,b   Bhattacharyya, Anamitra ^c   Serna, Marina ^b   Yebenes, Hugo ^b   Valpuesta, Jose M ^b   Andreu, Jose M ^a  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS   (Spain)

^b CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

^c Integrated Genomics   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASSEMBLY FEATURES; CHAPERONIN; CYTOSOLIC; DISCRETE SURFACES; DIVALENT CATION; DIVERGENT EVOLUTION; EUKARYOTIC CELLS; GTPASE ACTIVITY; HORIZONTAL GENE TRANSFER; MICROTUBULE ASSEMBLY; MICROTUBULES; PROTOFILAMENTS; SEQUENCE ANALYSIS; SEQUENCE COMPARISONS;

ASSEMBLY; DRUG INTERACTIONS; GENE TRANSFER; GENES;

BACTERIOLOGY;

ALPHA TUBULIN; BACTERIAL TUBULIN A; BACTERIAL TUBULIN B; BETA TUBULIN; CHAPERONIN; GUANOSINE DIPHOSPHATE; GUANOSINE TRIPHOSPHATASE; GUANOSINE TRIPHOSPHATE; MUTANT PROTEIN; TUBULIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENOME; BACTERIUM; CHIMERA; CONTROLLED STUDY; ENZYME ACTIVITY; ESCHERICHIA COLI; EUKARYOTIC CELL; GENE DUPLICATION; HORIZONTAL GENE TRANSFER; MICROTUBULE ASSEMBLY; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; PROSTHECOBACTER DEJONGEII; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN EXPRESSION; PROTEIN FOLDING; PROTEIN HYDROLYSIS; PROTEIN MOTIF; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SEQUENCE ANALYSIS;

AMINO ACID SUBSTITUTION; BACTERIAL PROTEINS; EUKARYOTIC CELLS; EVOLUTION, MOLECULAR; GENE TRANSFER, HORIZONTAL; GRAM-NEGATIVE BACTERIA; GUANOSINE DIPHOSPHATE; GUANOSINE TRIPHOSPHATE; MUTATION, MISSENSE; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; TUBULIN;

BACTERIA (MICROORGANISMS); EUKARYOTA; PROSTHECOBACTER; PROSTHECOBACTER DEJONGEII;

EID: 79957624627     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.230094     Document Type: Article

References (66)

1. Löwe, J., and Amos, L. A. (2009) Int. J. Biochem. Cell Biol. 41, 323-329
2. Nogales, E., Wolf, S. G., and Downing, K. H. (1998) Nature 391, 199-203
3. Löwe, J., and Amos, L. A. (1998) Nature 391, 203-206
4. Aldaz, H., Rice, L. M., Stearns, T., and Agard, D. A. (2005) Nature 435, 523-527
5. Schlieper, D., Oliva, M. A., Andreu, J. M., and Löwe, J. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 9170-9175
6. Ni, L., Xu, W., Kumaraswami, M., and Schumacher, M. A. (2010) Proc. Natl. Acad. Sci. U.S.A. 107, 11763-11768
7. Aylett, C. H., Wang, Q., Michie, K. A., Amos, L. A., and Löwe, J. (2010) Proc. Natl. Acad. Sci. U.S.A. 107, 19766-19771
8. Kollman, J. M., Polka, J. K., Zelter, A., Davis, T. N., and Agard, D. A. (2010) Nature 466, 879-882
9. Jordan, M. A., and Wilson, L. (2004) Nat. Rev. Cancer. 4, 253-265
10. Larsen, R. A., Cusumano, C., Fujioka, A., Lim-Fong, G., Patterson, P., and Pogliano, J. (2007) Genes. Dev. 21, 1340-1352
11. Stricker, J., Maddox, P., Salmon, E. D., and Erickson, H. P. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 3171-3175
12. Lewis, S. A., and Cowan, N. J. (2002) Nat. Med. 8, 1202-1203
13. Andreu, J. M., Oliva, M. A., and Monasterio, O. (2002) J. Biol. Chem. 277, 43262-43270
14. Bertrand, S., Barthelemy, I., Oliva, M. A., Carrascosa, J. L., Andreu, J. M., and Valpuesta, J. M. (2005) J. Mol. Biol. 346, 319-330
15. Haydon, D. J., Stokes, N. R., Ure, R., Galbraith, G., Bennett, J. M., Brown, D. R., Baker, P. J., Barynin, V. V., Rice, D. W., Sedelnikova, S. E., Heal, J. R., Sheridan, J. M., Aiwale, S. T., Chauhan, P. K., Srivastava, A., Taneja, A., Collins, I., Errington, J., and Czaplewski, L. G. (2008) Science 321, 1673-1675
16. Jenkins, C., Samudrala, R., Anderson, I., Hedlund, B. P., Petroni, G., Michailova, N., Pinel, N., Overbeek, R., Rosati, G., and Staley, J. T. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 17049-17054
17. Petroni, G., Spring, S., Schleifer, K. H., Verni, F., and Rosati, G. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 1813-1817
18. Pilhofer, M., Rosati, G., Ludwig, W., Schleifer, K. H., and Petroni, G. (2007) Mol. Biol. Evol. 24, 1439-1442
19. Yee, B., Lafi, F. F., Oakley, B., Staley, J. T., and Fuerst, J. A. (2007)BMCEvol. Biol. 7, 37
20. Takeda, M., Yoneya, A., Miyazaki, Y., Kondo, K., Makita, H., Kondoh, M., Suzuki, I., and Koizumi, J. (2008) Int. J. Syst. Evol. Microbiol. 58, 1561-1565
21. Sontag, C. A., Staley, J. T., and Erickson, H. P. (2005) J. Cell Biol. 169, 233-238
22. Sontag, C. A., Sage, H., and Erickson, H. P. (2009) PLoS One 4, e7253
23. Nogales, E. (2000) Annu. Rev. Biochem. 69, 277-302
24. Finn, R. D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J. E., Gavin, O. L., Gunasekaran, P., Ceric, G., Forslund, K., Holm, L., Sonnhammer, E. L., Eddy, S. R., and Bateman, A. (2010) Nucleic Acids Res. 38, D211-D222
25. UniProt Consortium (2011) Nucleic Acids Res. 39, D214-D219
26. Eddy, S. R. (1998) Bioinformatics 14, 755-763
27. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990) J. Mol. Biol. 215, 403-410
28. Edgar, R. C. (2004) BMC Bioinformatics 5, 113
29. Holm, L., and Park, J. (2000) Bioinformatics 16, 566-567
30. Pirovano, W., Feenstra, K. A., and Heringa, J. (2006) Nucleic Acids Res. 34, 6540-6548
31. Nogales, E., Downing, K. H., Amos, L. A., and Löwe, J. (1998) Nat. Struct. Biol. 5, 451-458
32. Huecas, S., and Andreu, J. M. (2003) J. Biol. Chem. 278, 46146-46154
33. Andreu, J. M. (2007) Methods Mol. Med. 137, 17-28
34. Greenfield, N. J. (2006) Nat. Protoc. 1, 2876-2890
35. Huecas, S., Schaffner-Barbero, C., García, W., Yébenes, H., Palacios, J. M., Díaz, J. F., Menéndez, M., and Andreu, J. M. (2007) J. Biol. Chem. 282, 37515-37528
36. Oliva, M. A., Huecas, S., Palacios, J. M., Martín-Benito, J., Valpuesta, J. M., and Andreu, J. M. (2003) J. Biol. Chem. 278, 33562-33570
37. Kodama, T., Fukui, K., and Kometani, K. (1986) J. Biochem. 99, 1465-1472
38. Peyrot, V., Leynadier, D., Sarrazin, M., Briand, C., Rodriquez, A., Nieto, J. M., and Andreu, J. M. (1989) J. Biol. Chem. 264, 21296-21301
39. Barbier, P., Peyrot, V., Leynadier, D., and Andreu, J. M. (1998) Biochemistry 37, 758-768
40. Andreu, J. M., Perez-Ramirez, B., Gorbunoff, M. J., Ayala, D., and Timasheff, S. N. (1998) Biochemistry 37, 8356-8368
41. Pérez-Ramírez, B., Gorbunoff, M. J., and Timasheff, S. N. (1998) Biochemistry 37, 1646-1661
42. Buey, R. M., Barasoain, I., Jackson, E., Meyer, A., Giannakakou, P., Paterson, I., Mooberry, S., Andreu, J. M., and Díaz, J. F. (2005) Chem. Biol. 12, 1269-1279
43. Casari, G., Sander, C., and Valencia, A. (1995) Nat. Struct. Biol. 2, 171-178
44. Zhou, H. X., Rivas, G., and Minton, A. P. (2008) Annu. Rev. Biophys. 37, 375-397
45. Hamel, E., del Campo, A. A., Lowe, M. C., Waxman, P. G., and Lin, C. M. (1982) Biochemistry 21, 503-509
46. Lee, J. C., and Timasheff, S. N. (1977) Biochemistry 16, 1754-1764
47. Oosawa F., and Asakura, S. (1975) Thermodynamics of the Polymerization of Protein, pp. 25-40, Academic Press, London
48. Huecas, S., Llorca, O., Boskovic, J., Martín-Benito, J., Valpuesta, J. M., and Andreu, J. M. (2008) Biophys. J. 94, 1796-1806
49. Panda, D., Chakrabarti, G., Hudson, J., Pigg, K., Miller, H. P., Wilson, L., and Himes, R. H. (2000) Biochemistry 39, 5075-5081
50. Gaskin, F. (1981) Biochemistry 20, 1318-1322
51. Spiegelman, B. M., Penningroth, S. M., and Kirschner, M. W. (1977) Cell 12, 587-600
52. Mukherjee, A., Saez, C., and Lutkenhaus, J. (2001) J. Bacteriol. 183, 7190-7197
53. Tinsley, E., and Khan, S. A. (2006) J. Bacteriol. 188, 2829-2835
54. Li, H., DeRosier, D. J., Nicholson, W. V., Nogales, E., and Downing, K. H. (2002) Structure 10, 1317-1328
55. Devos, D. P., and Reynaud, E. G. (2010) Science 330, 1187-1188
56. Staley, J. T., Bouzek, H., and Jenkins, C. (2005) FEMS Microbiol. Lett. 243, 9-14
57. Erickson, H. P. (2007) Bioessays 29, 668-677
58. Ludueña, R. F. (1998) Int. Rev. Cytol. 178, 207-275
59. Staley, J. T., Bont, J. A., and Jonge, K. (1976) Antonie Van Leeuwenhoek J. Microbiol. 42, 333-342
60. Caplow, M., and Fee, L. (2002) Mol. Biol. Cell. 13, 2120-2131
61. Menéndez, M., Rivas, G., Díaz, J. F., and Andreu, J. M. (1998) J. Biol. Chem. 273, 167-176
62. Löwe, J., Li, H., Downing, K. H., and Nogales, E. (2001) J. Mol. Biol. 313, 1045-1057
63. Oliva, M. A., Cordell, S. C., and Löwe, J. (2004) Nat. Struct. Mol. Biol. 11, 1243-1250
64. Ludueña, R. F., and McIntosh, J. (2009) ASCB 49th Annual Meeting, San Diego, CA, December 5-9, 2009, Abstract 239/B186, p. 116, American Society for Cell Biology, Bethesda, MD
65. McIntosh, J. R., Volkov, V., Ataullakhanov, F. I., and Grishchuk, E. L. (2010) J. Cell Sci. 123, 3425-3434
66. Nogales, E., Whittaker, M., Milligan, R. A., and Downing, K. H. (1999) Cell 96, 79-88