-
1
-
-
8444231721
-
Non-B DNA conformations, genomic rearrangements, and human disease
-
DOI 10.1074/jbc.R400028200
-
Bacolla A and Wells R D 2004 Non-B DNA conformations, genomic rearrangements, and human disease J. Biol. Chem. 279 47411-4 (Pubitemid 39540882)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.46
, pp. 47411-47414
-
-
Bacolla, A.1
Wells, R.D.2
-
2
-
-
34250803868
-
Nucleosome Chiral Transition under Positive Torsional Stress in Single Chromatin Fibers
-
DOI 10.1016/j.molcel.2007.05.037, PII S1097276507003632
-
Bancaud A et al 2007 Nucleosome chiral transition under positive torsional stress in single chromatin fibers Mol. Cell 27 135-47 (Pubitemid 46991385)
-
(2007)
Molecular Cell
, vol.27
, Issue.1
, pp. 135-147
-
-
Bancaud, A.1
Wagner, G.2
Conde E Silva, N.3
Lavelle, C.4
Wong, H.5
Mozziconacci, J.6
Barbi, M.7
Sivolob, A.8
Le Cam, E.9
Mouawad, L.10
Viovy, J.-L.11
Victor, J.-M.12
Prunell, A.13
-
4
-
-
0020103797
-
Stable cruciform formation at inverted repeat sequences in supercoiled DNA
-
Benham C J 1982 Stable cruciform formation at inverted repeat sequences in supercoiled DNA Biopolymers 21 679-96
-
(1982)
Biopolymers
, vol.21
, pp. 679-696
-
-
Benham, C.J.1
-
5
-
-
0020856954
-
Geometry and mechanics of DNA superhelicity
-
Benham C J 1983a Geometry and mechanics of DNA superhelicity Biopolymers 22 2477-95
-
(1983)
Biopolymers
, vol.22
, pp. 2477-2495
-
-
Benham, C.J.1
-
6
-
-
0020307758
-
Statistical mechanical analysis of competing conformational transitions in superhelical DNA
-
Benham C J 1983b Statistical mechanical analysis of competing conformational transitions in superhelical DNA Cold Spring Harbor Symp. Quant. Biol. 47 219-27 (Pubitemid 13071363)
-
(1982)
Cold Spring Harbor Symposia on Quantitative Biology
, vol.47
, Issue.1
, pp. 219-227
-
-
Benham, C.J.1
-
7
-
-
77955809107
-
Making sense of G-quadruplex and i-motif functions in oncogene promoters
-
Brooks T A, Kendrick S and Hurley L 2010 Making sense of G-quadruplex and i-motif functions in oncogene promoters FEBS J. 277 3459-69
-
(2010)
FEBS J.
, vol.277
, pp. 3459-3469
-
-
Brooks, T.A.1
Kendrick, S.2
Hurley, L.3
-
8
-
-
0018666498
-
A sign inversion mechanism for enzymatic supercoiling of DNA
-
Brown P O and Cozzarelli N R 1979 A sign inversion mechanism for enzymatic supercoiling of DNA Science 206 1081-3 (Pubitemid 10208881)
-
(1979)
Science
, vol.206
, Issue.4422
, pp. 1081-1083
-
-
Brown, P.O.1
-
11
-
-
33846599196
-
Chromatin looping mediates boundary element promoter interactions
-
DOI 10.1002/bies.20520
-
Celniker S E and Drewell R A 2007 Chromatin looping mediates boundary element promoter interactions Bioessays 29 7-10 (Pubitemid 46181799)
-
(2007)
BioEssays
, vol.29
, Issue.1
, pp. 7-10
-
-
Celniker, S.E.1
Drewell, R.A.2
-
12
-
-
77953995002
-
Covalent histone modifications-miswritten, misinterpreted and mis-erased in human cancers
-
Chi P, Allis C D and Wang G G 2010 Covalent histone modifications- miswritten, misinterpreted and mis-erased in human cancers Nat. Rev. Cancer 10 457-69
-
(2010)
Nat. Rev. Cancer
, vol.10
, pp. 457-469
-
-
Chi, P.1
Allis, C.D.2
Wang, G.G.3
-
13
-
-
70350435635
-
10 years of tension on chromatin: Results from single molecule force spectroscopy
-
Chien F T and van Noort J 2009 10 years of tension on chromatin: results from single molecule force spectroscopy Curr. Pharm. Biotechnol. 10 474-85
-
(2009)
Curr. Pharm. Biotechnol.
, vol.10
, pp. 474-485
-
-
Chien, F.T.1
Van Noort, J.2
-
14
-
-
33747776432
-
FBPs are calibrated molecular tools to adjust gene expression
-
DOI 10.1128/MCB.00754-06
-
Chung H J, Liu J, Dundr M, Nie Z, Sanford S and Levens D 2006 FBPs are calibrated molecular tools to adjust gene expression Mol. Cell Biol. 26 6584-97 (Pubitemid 44277896)
-
(2006)
Molecular and Cellular Biology
, vol.26
, Issue.17
, pp. 6584-6597
-
-
Chung, H.-J.1
Liu, J.2
Dundr, M.3
Nie, Z.4
Sanford, S.5
Levens, D.6
-
15
-
-
0024298718
-
Periodic interactions of heat-shock transcriptional elements
-
Cohen R S and Meselson M 1988 Periodic interactions of heat-shock transcriptional elements Nature 332 856-8
-
(1988)
Nature
, vol.332
, pp. 856-858
-
-
Cohen, R.S.1
Meselson, M.2
-
16
-
-
0033754160
-
Elastic stability of DNA configurations: II. Supercoiled plasmids with self-contact
-
Coleman B D, Swigon D and Tobias I 2000 Elastic stability of DNA configurations: II. Supercoiled plasmids with self-contact Phys. Rev. E 61 759-70
-
(2000)
Phys. Rev.
, vol.61
, Issue.1
, pp. 759-770
-
-
Coleman, B.D.1
Swigon, D.2
Tobias, I.3
-
17
-
-
70450222694
-
A model for all genomes: The role of transcription factories
-
Cook P R 2010 A model for all genomes: the role of transcription factories J. Mol. Biol. 395 1-10
-
(2010)
J. Mol. Biol.
, vol.395
, pp. 1-10
-
-
Cook, P.R.1
-
19
-
-
34548507690
-
In vivo dynamics of RNA polymerase II transcription
-
DOI 10.1038/nsmb1280, PII NSMB1280
-
Darzacq X, Shav-Tal Y, De Turris V, Brody Y, Shenoy S M, Phair R D and Singer R H 2007 In vivo dynamics of RNA polymerase II transcription Nat. Struct. Mol. Biol. 14 796-806 (Pubitemid 47373828)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.9
, pp. 796-806
-
-
Darzacq, X.1
Shav-Tal, Y.2
De Turris, V.3
Brody, Y.4
Shenoy, S.M.5
Phair, R.D.6
Singer, R.H.7
-
21
-
-
9444297879
-
Nucleosome arrays reveal the two-start organization of the chromatin fiber
-
DOI 10.1126/science.1103124
-
Dorigo B, Schalch T, Kulangara A, Duda S, Schroeder R R and Richmond T J 2004 Nucleosome arrays reveal the two-start organization of the chromatin fiber Science 306 1571-3 (Pubitemid 39564956)
-
(2004)
Science
, vol.306
, Issue.5701
, pp. 1571-1573
-
-
Dorigo, B.1
Schalch, T.2
Kulangara, A.3
Duda, S.4
Schroeder, R.R.5
Richmond, T.J.6
-
22
-
-
0015040327
-
The writhing number of a space curve
-
Fuller F B 1971 The writhing number of a space curve Proc. Natl Acad. Sci. USA 68 815-9
-
(1971)
Proc. Natl Acad. Sci. USA
, vol.68
, pp. 815-819
-
-
Fuller, F.B.1
-
23
-
-
67649664594
-
Centromeric nucleosomes induce positive DNA supercoils
-
Furuyama T and Henikoff S 2009 Centromeric nucleosomes induce positive DNA supercoils Cell 138 104-13
-
(2009)
Cell
, vol.138
, pp. 104-113
-
-
Furuyama, T.1
Henikoff, S.2
-
26
-
-
0027962511
-
DNA length, bending, and twisting constraints on IS50 transposition
-
DOI 10.1073/pnas.91.23.10834
-
Goryshin I Y, Kil Y V and Reznikoff W S 1994 DNA length, bending, and twisting constraints on IS50 transposition Proc. Natl Acad. Sci. USA 91 10834-8 (Pubitemid 24349579)
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.23
, pp. 10834-10838
-
-
Goryshin, I.Y.1
Kil, Y.V.2
Reznikoff, W.S.3
-
28
-
-
27144542066
-
Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases
-
DOI 10.1038/nature04088, PII N04088
-
Ha S C, Lowenhaupt K, Rich A, Kim Y G and Kim K K 2005 Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases Nature 437 1183-6 (Pubitemid 41509358)
-
(2005)
Nature
, vol.437
, Issue.7062
, pp. 1183-1186
-
-
Sung, C.H.1
Lowenhaupt, K.2
Rich, A.3
Kim, Y.-G.4
Kyeong, K.K.5
-
29
-
-
0034176194
-
G-quadruplex DNA: A potential target for anti-cancer drug design
-
DOI 10.1016/S0165-6147(00)01457-7, PII S0165614700014577
-
Han H and Hurley L H 2000 G-quadruplex DNA: a potential target for anti-cancer drug design Trends Pharmacol. Sci. 21 136-42 (Pubitemid 30190138)
-
(2000)
Trends in Pharmacological Sciences
, vol.21
, Issue.4
, pp. 136-142
-
-
Han, H.1
Hurley, L.H.2
-
30
-
-
0034161610
-
Loss of FBP function arrests cellular proliferation and extinguishes c-myc expression
-
He L, Liu J, Collins I, Sanford S, O'Connell B, Benham C J and Levens D 2000 Loss of FBP function arrests cellular proliferation and extinguishes c-myc expression EMBO J. 19 1034-44 (Pubitemid 30119828)
-
(2000)
EMBO Journal
, vol.19
, Issue.5
, pp. 1034-1044
-
-
He, L.1
Liu, J.2
Collins, I.3
Sanford, S.4
O'Connell, B.5
Benham, C.J.6
Levens, D.7
-
31
-
-
15844375100
-
The biology of left-handed Z-DNA
-
DOI 10.1074/jbc.271.20.11595
-
Herbert A and Rich A 1996 The biology of left-handed Z-DNA J. Biol. Chem. 271 11595-8 (Pubitemid 26157229)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.20
, pp. 11595-11598
-
-
Herbert, A.1
Rich, A.2
-
32
-
-
33745255099
-
A topoisomerase IIβ-mediated dsDNA break required for regulated transcription
-
DOI 10.1126/science.1127196
-
Ju B-G, Lunyak V V, Perissi V, Garcia-Bassets I, Rose D W, Glass C K and Rosenfeld M G 2006 A topoisomerase II{beta}-mediated dsDNA break required for regulated transcription Science 312 1798-802 (Pubitemid 43962898)
-
(2006)
Science
, vol.312
, Issue.5781
, pp. 1798-1802
-
-
Ju, B.-G.1
Lunyak, V.V.2
Perissi, V.3
Garcia-Bassets, I.4
Rose, D.W.5
Glass, C.K.6
Rosenfeld, M.G.7
-
33
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey M H et al 2010 Mediator and cohesin connect gene expression and chromatin architecture Nature 467 430-5
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
-
34
-
-
0028289189
-
Detection of localized DNA flexibility
-
DOI 10.1038/368163a0
-
Kahn J D, Yun E and Crothers D M 1994 Detection of localized DNA flexibility Nature 368 163-6 (Pubitemid 24101530)
-
(1994)
Nature
, vol.368
, Issue.6467
, pp. 163-166
-
-
Kahn, J.D.1
Yun, E.2
Crothers, D.M.3
-
35
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan N et al 2009 The DNA-encoded nucleosome organization of a eukaryotic genome Nature 458 362-6
-
(2009)
Nature
, vol.458
, Issue.7236
, pp. 362-366
-
-
Kaplan, N.1
-
36
-
-
77955410104
-
Nucleosome sequence preferences influence in vivo nucleosome organization
-
Kaplan N, Moore I, Fondufe-Mittendorf Y, Gossett A J, Tillo D, Field Y, Hughes T R, Lieb J D, Widom J and Segal E 2010 Nucleosome sequence preferences influence in vivo nucleosome organization Nat. Struct. Mol. Biol. 17 918-20 author reply 920-2
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 918-920
-
-
Kaplan, N.1
Moore, I.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
Field, Y.6
Hughes, T.R.7
Lieb, J.D.8
Widom, J.9
Segal, E.10
-
37
-
-
7544242666
-
The dynamic response of upstream DNA to transcription-generated torsional stress
-
DOI 10.1038/nsmb848
-
Kouzine F, Liu J, Sanford S, Chung H J and Levens D 2004 The dynamic response of upstream DNA to transcription-generated torsional stress Nat. Struct. Mol. Biol. 11 1092-100 (Pubitemid 39453338)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.11
, pp. 1092-1100
-
-
Kouzine, F.1
Liu, J.2
Sanford, S.3
Chung, H.-J.4
Levens, D.5
-
38
-
-
38849132828
-
The functional response of upstream DNA to dynamic supercoiling in vivo
-
DOI 10.1038/nsmb.1372, PII NSMB1372
-
Kouzine F, Sanford S, Elisha-Feil Z and Levens D 2008 The functional response of upstream DNA to dynamic supercoiling in vivo Nat. Struct. Mol. Biol. 15 146-54 (Pubitemid 351207509)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.2
, pp. 146-154
-
-
Kouzine, F.1
Sanford, S.2
Elisha-Feil, Z.3
Levens, D.4
-
39
-
-
65249169329
-
Forces and torques in the nucleus: Chromatin under mechanical constraints
-
Lavelle C 2009 Forces and torques in the nucleus: chromatin under mechanical constraints Biochem. Cell Biol. 87 307-22
-
(2009)
Biochem. Cell Biol.
, vol.87
, pp. 307-322
-
-
Lavelle, C.1
-
41
-
-
0018393775
-
Catastrophic variation of twist and writhing of circular DNAs with constraint?
-
DOI 10.1002/bip.1979.360180710
-
Le Bret M 1979 Catastrophic variation of twist and writhing of circular DNAs with constraint? Biopolymers 18 1709-25 (Pubitemid 9232070)
-
(1979)
Biopolymers
, vol.18
, Issue.7
, pp. 1709-1725
-
-
Le Bret, M.1
-
42
-
-
78649709362
-
Magnetic torque tweezers: Measuring torsional stiffness in DNA and RecA-DNA filaments
-
Lipfert J, Kerssemakers J W J, Jager T and Dekker N H 2010 Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments Nat. Methods 7 977-80
-
(2010)
Nat. Methods
, vol.7
, pp. 977-980
-
-
Lipfert, J.1
Kerssemakers, J.W.J.2
Jager, T.3
Dekker, N.H.4
-
43
-
-
79952282523
-
JTV1 co-activates FBP to induce USP29 transcription and stabilize p53 in response to oxidative stress
-
Liu J, Chung H J, Vogt M, Jin Y, Malide D, He L, Dundr M and Levens D 2011 JTV1 co-activates FBP to induce USP29 transcription and stabilize p53 in response to oxidative stress EMBO J. 30 846-58
-
(2011)
EMBO J.
, vol.30
, pp. 846-858
-
-
Liu, J.1
Chung, H.J.2
Vogt, M.3
Jin, Y.4
Malide, D.5
He, L.6
Dundr, M.7
Levens, D.8
-
44
-
-
33646779199
-
The FUSE/FBP/FIR/TFIIH system is a molecular machine programming a pulse of c-myc expression
-
Liu J, Kouzine F, Nie Z, Chung H J, Elisha-Feil Z, Weber A, Zhao K and Levens D 2006 The FUSE/FBP/FIR/TFIIH system is a molecular machine programming a pulse of c-myc expression EMBO J. 25 2119-30
-
(2006)
EMBO J.
, vol.25
, pp. 2119-2130
-
-
Liu, J.1
Kouzine, F.2
Nie, Z.3
Chung, H.J.4
Elisha-Feil, Z.5
Weber, A.6
Zhao, K.7
Levens, D.8
-
45
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu L F and Wang J C 1987 Supercoiling of the DNA template during transcription Proc. Natl Acad. Sci. USA 84 7024-7
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
46
-
-
44649199179
-
Boundaries. Boundaries...Boundaries
-
Lunyak V V 2008 Boundaries. Boundaries...Boundaries Curr. Opin. Cell Biol. 20 281-7
-
(2008)
Curr. Opin. Cell Biol.
, vol.20
, pp. 281-287
-
-
Lunyak, V.V.1
-
48
-
-
0029998428
-
Multiple single-stranded cis elements are associated with activated chromatin of the human c-myc gene in vivo
-
Michelotti G A, Michelotti E F, Pullner A, Duncan R C, Eick D and Levens D 1996 Multiple single-stranded cis elements are associated with activated chromatin of the human c-myc gene in vivo Mol. Cell Biol. 16 2656-69 (Pubitemid 26161269)
-
(1996)
Molecular and Cellular Biology
, vol.16
, Issue.6
, pp. 2656-2669
-
-
Michelotti, G.A.1
Michelotti, E.F.2
Pullner, A.3
Duncan, R.C.4
Eick, D.5
Levens, D.6
-
49
-
-
8344267602
-
Transcription-driven twin supercoiling of a DNA loop: A Brownian dynamics study
-
Mielke S P, Fink W H, Krishnan V V, Gronbech-Jensen N and Benham C J 2004 Transcription-driven twin supercoiling of a DNA loop: a Brownian dynamics study J. Chem. Phys. 121 8104-12
-
(2004)
J. Chem. Phys.
, vol.121
, Issue.16
, pp. 8104-8112
-
-
Mielke, S.P.1
Fink, W.H.2
Krishnan, V.V.3
Gronbech-Jensen, N.4
Benham, C.J.5
-
50
-
-
41549158994
-
Brownian dynamics of double-stranded DNA in periodic systems with discrete salt
-
Mielke S P, Gronbech-Jensen N and Benham C J 2008 Brownian dynamics of double-stranded DNA in periodic systems with discrete salt Phys. Rev. E 77 031924
-
(2008)
Phys. Rev.
, vol.77
, pp. 031924
-
-
Mielke, S.P.1
Gronbech-Jensen, N.2
Benham, C.J.3
-
51
-
-
0033534516
-
Flexibility of single-stranded DNA: Use of gapped duplex helices to determine the persistence lengths of Poly(dT) and Poly(dA)
-
DOI 10.1006/jmbi.1998.2287
-
Mills J B, Vacano E and Hagerman P J 1999 Flexibility of single-stranded DNA: use of gapped duplex helices to determine the persistence lengths of Poly(dT) and Poly(dA) J. Mol. Biol. 285 245-57 (Pubitemid 29034041)
-
(1999)
Journal of Molecular Biology
, vol.285
, Issue.1
, pp. 245-257
-
-
Mills, J.B.1
Vacano, E.2
Hagerman, P.J.3
-
53
-
-
0023513912
-
The structure of an oligo(dA)·oligo(dT) tract and its biological implications
-
DOI 10.1038/330221a0
-
Nelson H C, Finch J T, Luisi B F and Klug A 1987 The structure of an oligo(dA).oligo(dT) tract and its biological implications Nature 330 221-6 (Pubitemid 18006417)
-
(1987)
Nature
, vol.330
, Issue.6145
, pp. 221-226
-
-
Nelson, H.C.M.1
Finch, J.T.2
Luisi, B.F.3
Klug, A.4
-
55
-
-
77957240284
-
DNA curvature and flexibility in vitro and in vivo
-
Peters J P and Maher L J 2006 DNA curvature and flexibility in vitro and in vivo Q. Rev. Biophys. 43 23-63
-
(2006)
Q. Rev. Biophys.
, vol.43
, pp. 23-63
-
-
Peters, J.P.1
Maher, L.J.2
-
56
-
-
47849105417
-
Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions
-
Qin Y and Hurley L H 2008 Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions Biochimie 90 1149-71
-
(2008)
Biochimie
, vol.90
, pp. 1149-1171
-
-
Qin, Y.1
Hurley, L.H.2
-
57
-
-
70350054805
-
Overexpression of the far upstream element binding protein 1 in hepatocellular carcinoma is required for tumor growth
-
Rabenhorst U et al 2009 Overexpression of the far upstream element binding protein 1 in hepatocellular carcinoma is required for tumor growth Hepatology 50 1121-9
-
(2009)
Hepatology
, vol.50
, pp. 1121-1129
-
-
Rabenhorst, U.1
-
58
-
-
0037803571
-
Z-DNA: The long road to biological function
-
DOI 10.1038/nrg1115
-
Rich A and Zhang S G 2003 Z-DNA: the long road to biological function Nat. Rev. Genet. 4 566-72 (Pubitemid 36781347)
-
(2003)
Nature Reviews Genetics
, vol.4
, Issue.7
, pp. 566-572
-
-
Rich, A.1
Zhang, S.2
-
59
-
-
0023805801
-
No strict alignment is required between a transcriptional activator binding-site and the Tata box of a yeast gene
-
Ruden D M, Ma J and Ptashne M 1988 No strict alignment is required between a transcriptional activator binding-site and the Tata box of a yeast gene Proc. Natl Acad. Sci. USA 85 4262-6
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 4262-4266
-
-
Ruden, D.M.1
Ma, J.2
Ptashne, M.3
-
61
-
-
0026554929
-
Supercoiled DNA energetics and dynamics by computer simulation
-
Schlick T and Olson W K 1992 Supercoiled DNA energetics and dynamics by computer simulation J. Mol. Biol. 223 1089-119
-
(1992)
J. Mol. Biol.
, vol.223
, pp. 1089-1119
-
-
Schlick, T.1
Olson, W.K.2
-
63
-
-
60349115060
-
Poly(dA:dT) tracts: Major determinants of nucleosome organization
-
Segal E and Widom J 2009 Poly(dA:dT) tracts: major determinants of nucleosome organization Curr. Opin. Struct. Biol. 19 65-71
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 65-71
-
-
Segal, E.1
Widom, J.2
-
64
-
-
0035018021
-
G-quadruplex DNA structures-variations on a theme
-
Simonsson T 2001 G-quadruplex DNA structures-variations on a theme Biol. Chem. 382 621-8
-
(2001)
Biol. Chem.
, vol.382
, pp. 621-628
-
-
Simonsson, T.1
-
66
-
-
70350754211
-
Rates of in situ transcription and splicing in large human genes
-
Singh J and Padgett R A 2009 Rates of in situ transcription and splicing in large human genes Nat. Struct. Mol. Biol. 16 1128-33
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1128-1133
-
-
Singh, J.1
Padgett, R.A.2
-
67
-
-
84929963448
-
-
Strawbridge E M 2009 Mechanics, dynamics and structures of DNA as an elastic rod PhD Thesis UC Davis
-
(2009)
PhD Thesis
-
-
Strawbridge, E.M.1
-
68
-
-
65649089445
-
The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-myc promoter: Implications for drug targeting and control of gene expression
-
Sun D and Hurley L H 2009 The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-myc promoter: implications for drug targeting and control of gene expression J. Med. Chem. 52 2863-74
-
(2009)
J. Med. Chem.
, vol.52
, pp. 2863-2874
-
-
Sun, D.1
Hurley, L.H.2
-
69
-
-
0032038453
-
Unrestraining genetic processes with a protein-DNA hinge
-
Tomonaga T, Michelotti G A, Libutti D, Uy A, Sauer B and Levens D 1998 Unrestraining genetic processes with a protein-DNA hinge Mol. Cell 1 759-64 (Pubitemid 128379253)
-
(1998)
Molecular Cell
, vol.1
, Issue.5
, pp. 759-764
-
-
Tomonaga, T.1
Michelotti, G.A.2
Libutti, D.3
Uy, A.4
Sauer, B.5
Levens, D.6
-
70
-
-
77955045449
-
The role of nucleosome positioning in the evolution of gene regulation
-
Tsankov A M, Thompson D A, Socha A, Regev A and Rando O J 2010 The role of nucleosome positioning in the evolution of gene regulation PLoS Biol. 8 e1000414
-
(2010)
PLoS Biol.
, vol.8
, pp. 1000414
-
-
Tsankov, A.M.1
Thompson, D.A.2
Socha, A.3
Regev, A.4
Rando, O.J.5
-
71
-
-
0013924261
-
Physical and topological properties of circular DNA
-
Vinograd J and Lebowitz J 1966 Physical and topological properties of circular DNA J. Gen. Physiol. 49 103-25
-
(1966)
J. Gen. Physiol.
, vol.49
, pp. 103-125
-
-
Vinograd, J.1
Lebowitz, J.2
-
73
-
-
0026489194
-
Conformational and thermodynamic properties of supercoiled DNA
-
Vologodskii A V, Levene S D, Klenin K V, Frank-Kamenetskii M and Cozzarelli N R 1992 Conformational and thermodynamic properties of supercoiled DNA J. Mol. Biol. 227 1224-43
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 1224-1243
-
-
Vologodskii, A.V.1
Levene, S.D.2
Klenin, K.V.3
Frank-Kamenetskii, M.4
Cozzarelli, N.R.5
-
74
-
-
34548526743
-
Chromatin remodeling and cancer, part I: Covalent histone modifications
-
DOI 10.1016/j.molmed.2007.07.003, PII S1471491407001463
-
Wang G G, Allis C D and Chi P 2007a Chromatin remodeling and cancer, part I: covalent histone modifications Trends Mol. Med. 13 363-72 (Pubitemid 47385381)
-
(2007)
Trends in Molecular Medicine
, vol.13
, Issue.9
, pp. 363-372
-
-
Wang, G.G.1
Allis, C.D.2
Chi, P.3
-
75
-
-
34548544648
-
Chromatin remodeling and cancer, part II: ATP-dependent chromatin remodeling
-
DOI 10.1016/j.molmed.2007.07.004, PII S1471491407001475
-
Wang G G, Allis C D and Chi P 2007b Chromatin remodeling and cancer: part II. ATP-dependent chromatin remodeling Trends Mol. Med. 13 373-80 (Pubitemid 47385382)
-
(2007)
Trends in Molecular Medicine
, vol.13
, Issue.9
, pp. 373-380
-
-
Wang, G.G.1
Allis, C.D.2
Chi, P.3
-
76
-
-
0023904316
-
Action at a distance along a DNA
-
Wang J C and Giaever G N 1988 Action at a distance along a DNA Science 240 300-4
-
(1988)
Science
, vol.240
, pp. 300-304
-
-
Wang, J.C.1
Giaever, G.N.2
-
77
-
-
0000751914
-
Self-linking and gauss-integral in higher dimensions
-
White J H 1969 Self-linking and gauss-integral in higher dimensions Am. J. Math. 91 693-728
-
(1969)
Am. J. Math.
, vol.91
, pp. 693-728
-
-
White, J.H.1
-
78
-
-
33747654494
-
Non-B DNA conformations formed by long repeating tracts of myotonic dystrophy type 1, myotonic dystrophy type 2, and Friedreich's ataxia genes, not the sequences per se, promote mutagenesis in Flanking regions
-
DOI 10.1074/jbc.M603888200
-
Wojciechowska M, Napierala M, Larson J E and Wells R D 2006 Non-B DNA conformations formed by long repeating tracts of myotonic dystrophy type 1, myotonic dystrophy type 2, and Friedreich's ataxia genes, not the sequences per se, promote mutagenesis in flanking regions J. Biol. Chem. 281 24531-43 (Pubitemid 44274228)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.34
, pp. 24531-24543
-
-
Wojciechowska, M.1
Napierala, M.2
Larson, J.E.3
Wells, R.D.4
-
79
-
-
77952563068
-
Condensin and cohesin complexity: The expanding repertoire of functions
-
Wood A J, Severson A F and Meyer B J 2010 Condensin and cohesin complexity: the expanding repertoire of functions Nat. Rev. Genet. 11 391-404
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 391-404
-
-
Wood, A.J.1
Severson, A.F.2
Meyer, B.J.3
-
80
-
-
79551522264
-
Theoretical analysis of the stress induced B-Z transition in superhelical DNA
-
Zhabinskaya D and Benham C J 2011 Theoretical analysis of the stress induced B-Z transition in superhelical DNA PloS Comput. Biol. 7 e1001051
-
(2011)
PloS Comput. Biol.
, vol.7
, pp. 1001051
-
-
Zhabinskaya, D.1
Benham, C.J.2
|