메뉴 건너뛰기




Volumn 11, Issue , 2011, Pages

Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets

Author keywords

[No Author keywords available]

Indexed keywords

VITACEAE; VITIS VINIFERA;

EID: 79955961678     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-11-86     Document Type: Article
Times cited : (39)

References (97)
  • 4
    • 79959554992 scopus 로고    scopus 로고
    • Functional genomics: Closed system approaches for transcriptome analysis
    • New York, NY: CRC Press, Adam-Blondon A-F, Martinez-Zapata J, Kole C
    • Romieu C, Kappel C, Delrot S. Functional genomics: Closed system approaches for transcriptome analysis. Genetics, Genomics and Breeding of Grapes 2011, 270-298. New York, NY: CRC Press, Adam-Blondon A-F, Martinez-Zapata J, Kole C.
    • (2011) Genetics, Genomics and Breeding of Grapes , pp. 270-298
    • Romieu, C.1    Kappel, C.2    Delrot, S.3
  • 5
    • 79959534587 scopus 로고    scopus 로고
    • Vitis functional genomics: Open systems for transcriptome analysis
    • Enfield, NH: Science Publishers, Adam-Blondon A-F, Martinez-Zapata J, Kole C
    • Tillett R, Cushman J. Vitis functional genomics: Open systems for transcriptome analysis. Genetics, Genomics and Breeding of Grapes 2011, 235-269. Enfield, NH: Science Publishers, Adam-Blondon A-F, Martinez-Zapata J, Kole C.
    • (2011) Genetics, Genomics and Breeding of Grapes , pp. 235-269
    • Tillett, R.1    Cushman, J.2
  • 7
    • 44949165453 scopus 로고    scopus 로고
    • Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures
    • 10.1186/1471-2229-8-53, 2423195, 18474095
    • Iandolino A, Nobuta K, da Silva F, Cook D, Meyers B. Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures. BMC Plant Biol 2008, 8:53. 10.1186/1471-2229-8-53, 2423195, 18474095.
    • (2008) BMC Plant Biol , vol.8 , pp. 53
    • Iandolino, A.1    Nobuta, K.2    da Silva, F.3    Cook, D.4    Meyers, B.5
  • 9
    • 77950545365 scopus 로고    scopus 로고
    • Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq
    • 10.1104/pp.109.149716, 2850006, 20118272
    • Zenoni S, Ferrarini A, Giacomelli E, Xumerle L, Fasoli M, Malerba G, Bellin D, Pezzotti M, Delledonne M. Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq. Plant Physiol 2010, 152:1787-1795. 10.1104/pp.109.149716, 2850006, 20118272.
    • (2010) Plant Physiol , vol.152 , pp. 1787-1795
    • Zenoni, S.1    Ferrarini, A.2    Giacomelli, E.3    Xumerle, L.4    Fasoli, M.5    Malerba, G.6    Bellin, D.7    Pezzotti, M.8    Delledonne, M.9
  • 11
    • 34447643281 scopus 로고    scopus 로고
    • Tissue-specific mRNA expression profiling in grape berry tissues
    • 10.1186/1471-2164-8-187, 1925093, 17584945
    • Grimplet J, Deluc L, Tillett R, Wheatley M, Schlauch K, Cramer G, Cushman J. Tissue-specific mRNA expression profiling in grape berry tissues. BMC Genomics 2007, 8:187. 10.1186/1471-2164-8-187, 1925093, 17584945.
    • (2007) BMC Genomics , vol.8 , pp. 187
    • Grimplet, J.1    Deluc, L.2    Tillett, R.3    Wheatley, M.4    Schlauch, K.5    Cramer, G.6    Cushman, J.7
  • 12
    • 53549123258 scopus 로고    scopus 로고
    • Stimulation of the grape berry expansion by ethylene and effects on related gene transcripts, over the ripening phase
    • 10.1111/j.1399-3054.2008.01158.x, 18785902
    • Chervin C, Tira-Umphon A, Terrier N, Zouine M, Severac D, Roustan J. Stimulation of the grape berry expansion by ethylene and effects on related gene transcripts, over the ripening phase. Physiol Plant 2008, 134:534-546. 10.1111/j.1399-3054.2008.01158.x, 18785902.
    • (2008) Physiol Plant , vol.134 , pp. 534-546
    • Chervin, C.1    Tira-Umphon, A.2    Terrier, N.3    Zouine, M.4    Severac, D.5    Roustan, J.6
  • 13
    • 77949439770 scopus 로고    scopus 로고
    • General and species-specific transcriptional responses to downy mildew infection in a susceptible (Vitis vinifera) and a resistant (V. riparia) grapevine species
    • 10.1186/1471-2164-11-117, 2831845, 20167053
    • Polesani M, Bortesi L, Ferrarini A, Zamboni A, Fasoli M, Zadra C, Lovato A, Pezzotti M, Delledonne M, Polverari A. General and species-specific transcriptional responses to downy mildew infection in a susceptible (Vitis vinifera) and a resistant (V. riparia) grapevine species. BMC Genomics 2010, 11:117. 10.1186/1471-2164-11-117, 2831845, 20167053.
    • (2010) BMC Genomics , vol.11 , pp. 117
    • Polesani, M.1    Bortesi, L.2    Ferrarini, A.3    Zamboni, A.4    Fasoli, M.5    Zadra, C.6    Lovato, A.7    Pezzotti, M.8    Delledonne, M.9    Polverari, A.10
  • 15
    • 0000906579 scopus 로고
    • Sodium chloride and soil texture interactions in irrigated field grown Sultana grapevines. 1. Yield and fruit quality
    • Prior L, Grieve A, Cullis B. Sodium chloride and soil texture interactions in irrigated field grown Sultana grapevines. 1. Yield and fruit quality. Aust J Plant Physiol 1992, 43:1067-1083.
    • (1992) Aust J Plant Physiol , vol.43 , pp. 1067-1083
    • Prior, L.1    Grieve, A.2    Cullis, B.3
  • 16
    • 0032902597 scopus 로고    scopus 로고
    • Irrigation of grapevines with saline water at different growth stages 1. Effects on soil, vegetative growth, and yield
    • Stevens R, Harvey G, Partington D, Coombe B. Irrigation of grapevines with saline water at different growth stages 1. Effects on soil, vegetative growth, and yield. Austral J Agric Res 1999, 50:343-355.
    • (1999) Austral J Agric Res , vol.50 , pp. 343-355
    • Stevens, R.1    Harvey, G.2    Partington, D.3    Coombe, B.4
  • 17
    • 0141836712 scopus 로고    scopus 로고
    • Monitoring salt stress in grapevines: are measures of plant trait variability useful?
    • Sinclair C, Hoffmann AA. Monitoring salt stress in grapevines: are measures of plant trait variability useful?. J Appl Ecol 2003, 40:928-937.
    • (2003) J Appl Ecol , vol.40 , pp. 928-937
    • Sinclair, C.1    Hoffmann, A.A.2
  • 18
    • 0004070962 scopus 로고
    • Biology of the grapevine
    • Cambridge; New York: Cambridge University Press
    • Mullins MG, Bouquet A, Williams LE. Biology of the grapevine. 1992, Cambridge; New York: Cambridge University Press.
    • (1992)
    • Mullins, M.G.1    Bouquet, A.2    Williams, L.E.3
  • 19
    • 34848821004 scopus 로고    scopus 로고
    • Transcriptional regulation of anthocyanin biosynthesis in ripening fruits of grapevine under seasonal water deficit
    • 10.1111/j.1365-3040.2007.01716.x, 17897409
    • Castellarin S, Pfeiffer A, Sivilotti P, Degan M, Peterlunger E, DI Gaspero G. Transcriptional regulation of anthocyanin biosynthesis in ripening fruits of grapevine under seasonal water deficit. Plant Cell Environ 2007, 30:1381-1399. 10.1111/j.1365-3040.2007.01716.x, 17897409.
    • (2007) Plant Cell Environ , vol.30 , pp. 1381-1399
    • Castellarin, S.1    Pfeiffer, A.2    Sivilotti, P.3    Degan, M.4    Peterlunger, E.5    DI Gaspero, G.6
  • 20
    • 0035096342 scopus 로고    scopus 로고
    • Effect of irrigation on changes in the anthocyanin composition of the skin of cv Tempranillo (Vitis vinifera L.) grape berries during ripening
    • Esteban M, Villanueva M, Lissarrague J. Effect of irrigation on changes in the anthocyanin composition of the skin of cv Tempranillo (Vitis vinifera L.) grape berries during ripening. J Sci Food Agric 2001, 81:409-420.
    • (2001) J Sci Food Agric , vol.81 , pp. 409-420
    • Esteban, M.1    Villanueva, M.2    Lissarrague, J.3
  • 21
    • 0036974950 scopus 로고    scopus 로고
    • Effect of maturity and vine water status on grape skin and wine flavonoids
    • Kennedy JA, Matthews MA, Waterhouse AL. Effect of maturity and vine water status on grape skin and wine flavonoids. Am J Enol Vitic 2002, 53:268-274.
    • (2002) Am J Enol Vitic , vol.53 , pp. 268-274
    • Kennedy, J.A.1    Matthews, M.A.2    Waterhouse, A.L.3
  • 22
    • 36849055113 scopus 로고    scopus 로고
    • Water deficits accelerate ripening and induce changes in gene expression regulating flavonoid biosynthesis in grape berries
    • 10.1007/s00425-007-0598-8, 17694320
    • Castellarin S, Matthews M, Di Gaspero G, Gambetta G. Water deficits accelerate ripening and induce changes in gene expression regulating flavonoid biosynthesis in grape berries. Planta 2007, 227:101-112. 10.1007/s00425-007-0598-8, 17694320.
    • (2007) Planta , vol.227 , pp. 101-112
    • Castellarin, S.1    Matthews, M.2    Di Gaspero, G.3    Gambetta, G.4
  • 25
    • 29944445042 scopus 로고    scopus 로고
    • Changes and subcellular localizations of the enzymes involved in phenylpropanoid metabolism during grape berry development
    • 10.1016/j.jplph.2005.07.006, 16399002
    • Chen JY, Wen PF, Kong WF, Pan QH, Wan SB, Huang WD. Changes and subcellular localizations of the enzymes involved in phenylpropanoid metabolism during grape berry development. J Plant Physiol 2006, 163:115-127. 10.1016/j.jplph.2005.07.006, 16399002.
    • (2006) J Plant Physiol , vol.163 , pp. 115-127
    • Chen, J.Y.1    Wen, P.F.2    Kong, W.F.3    Pan, Q.H.4    Wan, S.B.5    Huang, W.D.6
  • 26
    • 0033767809 scopus 로고    scopus 로고
    • Differential screening indicates a dramatic change in mRNA profiles during grape berry ripening. Cloning and characterization of cDNAs encoding putative cell wall and stress response proteins
    • 10.1104/pp.122.3.803, 58916, 10712544
    • Davies C, Robinson S. Differential screening indicates a dramatic change in mRNA profiles during grape berry ripening. Cloning and characterization of cDNAs encoding putative cell wall and stress response proteins. Plant Physiol 2000, 122:803-812. 10.1104/pp.122.3.803, 58916, 10712544.
    • (2000) Plant Physiol , vol.122 , pp. 803-812
    • Davies, C.1    Robinson, S.2
  • 27
    • 67649476229 scopus 로고    scopus 로고
    • Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay
    • 10.1186/1471-2164-10-212, 2701440, 19426499
    • Deluc LG, Quilici DR, Decendit A, Grimplet J, Wheatley MD, Schlauch KA, Merillon JM, Cushman JC, Cramer GR. Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay. BMC Genomics 2009, 10:212. 10.1186/1471-2164-10-212, 2701440, 19426499.
    • (2009) BMC Genomics , vol.10 , pp. 212
    • Deluc, L.G.1    Quilici, D.R.2    Decendit, A.3    Grimplet, J.4    Wheatley, M.D.5    Schlauch, K.A.6    Merillon, J.M.7    Cushman, J.C.8    Cramer, G.R.9
  • 28
    • 38949154551 scopus 로고    scopus 로고
    • Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison
    • 10.1186/1471-2164-8-428, 2228314, 18034875
    • Pilati S, Perazzolli M, Malossini A, Cestaro A, Demattè L, Fontana P, Dal Ri A, Viola R, Velasco R, Moser C. Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison. BMC Genomics 2007, 8:428. 10.1186/1471-2164-8-428, 2228314, 18034875.
    • (2007) BMC Genomics , vol.8 , pp. 428
    • Pilati, S.1    Perazzolli, M.2    Malossini, A.3    Cestaro, A.4    Demattè, L.5    Fontana, P.6    Dal Ri, A.7    Viola, R.8    Velasco, R.9    Moser, C.10
  • 29
    • 11244292014 scopus 로고    scopus 로고
    • CDNA microarray analysis of developing grape (Vitis vinifera cv. Shiraz) berry skin
    • 10.1007/s10142-004-0124-z, 15480888
    • Waters DLE, Holton TA, Ablett EM, Lee LS, Henry RJ. cDNA microarray analysis of developing grape (Vitis vinifera cv. Shiraz) berry skin. Funct Integr Genomics 2005, 5:40-58. 10.1007/s10142-004-0124-z, 15480888.
    • (2005) Funct Integr Genomics , vol.5 , pp. 40-58
    • Waters, D.L.E.1    Holton, T.A.2    Ablett, E.M.3    Lee, L.S.4    Henry, R.J.5
  • 32
    • 51749103583 scopus 로고    scopus 로고
    • Transcriptional and metabolic profiling of grape (Vitis vinifera L.) leaves unravel possible innate resistance against pathogenic fungi
    • 10.1093/jxb/ern187, 18648103
    • Figueiredo A, Fortes A, Ferreira S, Sebastiana M, Choi Y, Sousa L, Acioli-Santos B, Pessoa F, Verpoorte R, Pais M. Transcriptional and metabolic profiling of grape (Vitis vinifera L.) leaves unravel possible innate resistance against pathogenic fungi. J Exp Bot 2008, 59:3371-3381. 10.1093/jxb/ern187, 18648103.
    • (2008) J Exp Bot , vol.59 , pp. 3371-3381
    • Figueiredo, A.1    Fortes, A.2    Ferreira, S.3    Sebastiana, M.4    Choi, Y.5    Sousa, L.6    Acioli-Santos, B.7    Pessoa, F.8    Verpoorte, R.9    Pais, M.10
  • 33
    • 69449097345 scopus 로고    scopus 로고
    • Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: extending MapMan ontology for grapevine
    • 10.1186/1471-2229-9-104, 2731041, 19656401
    • Rotter A, Camps C, Lohse M, Kappel C, Pilati S, Hren M, Stitt M, Coutos-Thevenot P, Moser C, Usadel B, Delrot S, Gruden K. Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: extending MapMan ontology for grapevine. BMC Plant Biol 2009, 9:104. 10.1186/1471-2229-9-104, 2731041, 19656401.
    • (2009) BMC Plant Biol , vol.9 , pp. 104
    • Rotter, A.1    Camps, C.2    Lohse, M.3    Kappel, C.4    Pilati, S.5    Hren, M.6    Stitt, M.7    Coutos-Thevenot, P.8    Moser, C.9    Usadel, B.10    Delrot, S.11    Gruden, K.12
  • 35
    • 61349162295 scopus 로고    scopus 로고
    • Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break
    • 10.1007/s10142-008-0090-y, 18633655
    • Mathiason K, He D, Grimplet J, Venkateswari J, Galbraith D, Or E, Fennell A. Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break. Funct Integr Genomics 2009, 9:81-96. 10.1007/s10142-008-0090-y, 18633655.
    • (2009) Funct Integr Genomics , vol.9 , pp. 81-96
    • Mathiason, K.1    He, D.2    Grimplet, J.3    Venkateswari, J.4    Galbraith, D.5    Or, E.6    Fennell, A.7
  • 36
    • 77950465225 scopus 로고    scopus 로고
    • Differential floral development and gene expression in grapevines during long and short photoperiods suggests a role for floral genes in dormancy transitioning
    • 10.1007/s11103-010-9611-x, 20151315
    • Sreekantan L, Mathiason K, Grimplet J, Schlauch K, Dickerson JA, Fennell AY. Differential floral development and gene expression in grapevines during long and short photoperiods suggests a role for floral genes in dormancy transitioning. Plant Mol Biol 2010, 73:191-205. 10.1007/s11103-010-9611-x, 20151315.
    • (2010) Plant Mol Biol , vol.73 , pp. 191-205
    • Sreekantan, L.1    Mathiason, K.2    Grimplet, J.3    Schlauch, K.4    Dickerson, J.A.5    Fennell, A.Y.6
  • 37
    • 0034014059 scopus 로고    scopus 로고
    • Genomic approaches to plant stress tolerance
    • 10.1016/S1369-5266(99)00052-7, 10712956
    • Cushman JC, Bohnert HJ. Genomic approaches to plant stress tolerance. Curr Opin Plant Biol 2000, 3:117-124. 10.1016/S1369-5266(99)00052-7, 10712956.
    • (2000) Curr Opin Plant Biol , vol.3 , pp. 117-124
    • Cushman, J.C.1    Bohnert, H.J.2
  • 38
    • 14844342962 scopus 로고    scopus 로고
    • Understanding and improving salt tolerance in plants
    • Chinnusamy V, Jagendorf A, Zhu JK. Understanding and improving salt tolerance in plants. Crop Sci 2005, 45:437-448.
    • (2005) Crop Sci , vol.45 , pp. 437-448
    • Chinnusamy, V.1    Jagendorf, A.2    Zhu, J.K.3
  • 39
    • 71249136783 scopus 로고    scopus 로고
    • Accumulation of lead in the roots of grass pea (Lathyrus sativus L.) plants triggers systemic variation in gene expression in the shoots
    • 10.1016/j.chemosphere.2009.07.058, 19726070
    • Brunet J, Varrault G, Zuily-Fodil Y, Repellin A. Accumulation of lead in the roots of grass pea (Lathyrus sativus L.) plants triggers systemic variation in gene expression in the shoots. Chemosphere 2009, 77:1113-1120. 10.1016/j.chemosphere.2009.07.058, 19726070.
    • (2009) Chemosphere , vol.77 , pp. 1113-1120
    • Brunet, J.1    Varrault, G.2    Zuily-Fodil, Y.3    Repellin, A.4
  • 40
    • 0035801440 scopus 로고    scopus 로고
    • Anti-inflammatory tetramers of resveratrol from the roots of Vitis amurensis and the conformations of the seven-membered ring in some oligostilbenes
    • Huang KS, Lin M, Cheng GF. Anti-inflammatory tetramers of resveratrol from the roots of Vitis amurensis and the conformations of the seven-membered ring in some oligostilbenes. Phytochem 2001, 58:357-362.
    • (2001) Phytochem , vol.58 , pp. 357-362
    • Huang, K.S.1    Lin, M.2    Cheng, G.F.3
  • 41
    • 11844264032 scopus 로고    scopus 로고
    • Expression of the grapevine stilbene synthase gene VST1 in papaya provides increased resistance against diseases caused by Phytophthora palmivora
    • 10.1007/s00425-004-1343-1, 15309535
    • Zhu YJ, Agbayani R, Jackson MC, Tang CS, Moore PH. Expression of the grapevine stilbene synthase gene VST1 in papaya provides increased resistance against diseases caused by Phytophthora palmivora. Planta 2004, 220:241-250. 10.1007/s00425-004-1343-1, 15309535.
    • (2004) Planta , vol.220 , pp. 241-250
    • Zhu, Y.J.1    Agbayani, R.2    Jackson, M.C.3    Tang, C.S.4    Moore, P.H.5
  • 43
    • 70349659689 scopus 로고    scopus 로고
    • A framework map from grapevine V3125 (Vitis vinifera 'Schiava grossa' x 'Riesling') x rootstock cultivar 'Borner' (Vitis riparia x Vitis cinerea) to localize genetic determinants of phylloxera root resistance
    • 10.1007/s00122-009-1107-1, 19626311
    • Zhang J, Hausmann L, Eibach R, Welter LJ, Topfer R, Zyprian EM. A framework map from grapevine V3125 (Vitis vinifera 'Schiava grossa' x 'Riesling') x rootstock cultivar 'Borner' (Vitis riparia x Vitis cinerea) to localize genetic determinants of phylloxera root resistance. Theor Appl Genet 2009, 119:1039-1051. 10.1007/s00122-009-1107-1, 19626311.
    • (2009) Theor Appl Genet , vol.119 , pp. 1039-1051
    • Zhang, J.1    Hausmann, L.2    Eibach, R.3    Welter, L.J.4    Topfer, R.5    Zyprian, E.M.6
  • 44
    • 77954534040 scopus 로고    scopus 로고
    • Transcriptional profiling of ESTs responsive to Rhizobium vitis from 'Tamnara' grapevines (Vitis sp.)
    • 10.1016/j.jplph.2010.02.005, 20398958
    • Choi YJ, Yun HK, Park KS, Noh JH, Heo YY, Kim SH, Kim DW, Lee HJ. Transcriptional profiling of ESTs responsive to Rhizobium vitis from 'Tamnara' grapevines (Vitis sp.). J Plant Physiol 2010, 167:1084-1092. 10.1016/j.jplph.2010.02.005, 20398958.
    • (2010) J Plant Physiol , vol.167 , pp. 1084-1092
    • Choi, Y.J.1    Yun, H.K.2    Park, K.S.3    Noh, J.H.4    Heo, Y.Y.5    Kim, S.H.6    Kim, D.W.7    Lee, H.J.8
  • 45
    • 0035673238 scopus 로고    scopus 로고
    • Generation of EST from grape berry at various developmental stages
    • Terrier N, Ageorges A, Abbal P, Romieu C. Generation of EST from grape berry at various developmental stages. J Plant Physiol 2001, 158:1575-1583.
    • (2001) J Plant Physiol , vol.158 , pp. 1575-1583
    • Terrier, N.1    Ageorges, A.2    Abbal, P.3    Romieu, C.4
  • 46
    • 34548785463 scopus 로고    scopus 로고
    • Generation of ESTs in Vitis vinifera wine grape (Cabernet Sauvignon) and table grape (Muscat Hamburg) and discovery of new candidate genes with potential roles in berry development
    • 10.1016/j.gene.2007.07.016, 17761391
    • Peng F, Reid K, Liao N, Schlosser J, Lijavetzky D, Holt R, Martínez Zapater J, Jones S, Marra M, Bohlmann J, Lund S. Generation of ESTs in Vitis vinifera wine grape (Cabernet Sauvignon) and table grape (Muscat Hamburg) and discovery of new candidate genes with potential roles in berry development. Gene 2007, 402:40-50. 10.1016/j.gene.2007.07.016, 17761391.
    • (2007) Gene , vol.402 , pp. 40-50
    • Peng, F.1    Reid, K.2    Liao, N.3    Schlosser, J.4    Lijavetzky, D.5    Holt, R.6    Martínez Zapater, J.7    Jones, S.8    Marra, M.9    Bohlmann, J.10    Lund, S.11
  • 47
    • 33947220315 scopus 로고    scopus 로고
    • Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection
    • 10.1186/1471-2229-7-8, 1821027, 17316447
    • Lin H, Doddapaneni H, Takahashi Y, Walker M. Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection. BMC Plant Biol 2007, 7:8. 10.1186/1471-2229-7-8, 1821027, 17316447.
    • (2007) BMC Plant Biol , vol.7 , pp. 8
    • Lin, H.1    Doddapaneni, H.2    Takahashi, Y.3    Walker, M.4
  • 48
    • 79959553169 scopus 로고    scopus 로고
    • Vitis vinifera-UniGene Build #12
    • Vitis vinifera-UniGene Build #12. , http://www.ncbi.nlm.nih.gov/UniGene/UGOrg.cgi?TAXID=29760
  • 49
    • 38849128565 scopus 로고    scopus 로고
    • DFCI - Grape Gene Index
    • DFCI - Grape Gene Index. , http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=grape
  • 51
    • 0014854453 scopus 로고
    • The diagram method for comparing sequences. its use with amino acid and nucleotide sequences
    • 10.1111/j.1432-1033.1970.tb01046.x, 5456129
    • Gibbs AJ, McIntyre GA. The diagram method for comparing sequences. its use with amino acid and nucleotide sequences. Eur J Biochem 1970, 16:1-11. 10.1111/j.1432-1033.1970.tb01046.x, 5456129.
    • (1970) Eur J Biochem , vol.16 , pp. 1-11
    • Gibbs, A.J.1    McIntyre, G.A.2
  • 52
    • 12344275541 scopus 로고    scopus 로고
    • Limited agreement among three global gene expression methods highlights the requirement for non-global validation
    • 10.1093/bioinformatics/bth421, 15256402
    • Haverty PM, Hsiao LL, Gullans SR, Hansen U, Weng Z. Limited agreement among three global gene expression methods highlights the requirement for non-global validation. Bioinformatics 2004, 20:3431-3441. 10.1093/bioinformatics/bth421, 15256402.
    • (2004) Bioinformatics , vol.20 , pp. 3431-3441
    • Haverty, P.M.1    Hsiao, L.L.2    Gullans, S.R.3    Hansen, U.4    Weng, Z.5
  • 53
    • 0037440150 scopus 로고    scopus 로고
    • IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments
    • Romualdi C, Bortoluzzi S, D'Alessi F, Danieli GA. IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments. Physiol Genomics 2003, 12:159-162.
    • (2003) Physiol Genomics , vol.12 , pp. 159-162
    • Romualdi, C.1    Bortoluzzi, S.2    D'Alessi, F.3    Danieli, G.A.4
  • 54
    • 0034772104 scopus 로고    scopus 로고
    • Detecting differentially expressed genes in multiple tag sampling experiments: comparative evaluation of statistical tests
    • 10.1093/hmg/10.19.2133, 11590130
    • Romualdi C, Bortoluzzi S, Danieli GA. Detecting differentially expressed genes in multiple tag sampling experiments: comparative evaluation of statistical tests. Hum Mol Genet 2001, 10:2133-2141. 10.1093/hmg/10.19.2133, 11590130.
    • (2001) Hum Mol Genet , vol.10 , pp. 2133-2141
    • Romualdi, C.1    Bortoluzzi, S.2    Danieli, G.A.3
  • 55
    • 77949524119 scopus 로고    scopus 로고
    • VitisNet: "Omics" integration through grapevine molecular networks
    • 10.1371/journal.pone.0008365, 2791446, 20027228
    • Grimplet J, Cramer GR, Dickerson JA, Mathiason K, Van Hemert J, Fennell AY. VitisNet: "Omics" integration through grapevine molecular networks. PLoS ONE 2009, 4:e8365. 10.1371/journal.pone.0008365, 2791446, 20027228.
    • (2009) PLoS ONE , vol.4
    • Grimplet, J.1    Cramer, G.R.2    Dickerson, J.A.3    Mathiason, K.4    Van Hemert, J.5    Fennell, A.Y.6
  • 57
    • 25444531992 scopus 로고    scopus 로고
    • Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips
    • 10.1186/1471-2164-6-91, 1186021, 15955238
    • van Ruissen F, Ruijter JM, Schaaf GJ, Asgharnegad L, Zwijnenburg DA, Kool M, Baas F. Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips. BMC Genomics 2005, 6:91. 10.1186/1471-2164-6-91, 1186021, 15955238.
    • (2005) BMC Genomics , vol.6 , pp. 91
    • van Ruissen, F.1    Ruijter, J.M.2    Schaaf, G.J.3    Asgharnegad, L.4    Zwijnenburg, D.A.5    Kool, M.6    Baas, F.7
  • 58
    • 34248144849 scopus 로고    scopus 로고
    • Too much data, but little inter-changeability: a lesson learned from mining public data on tissue specificity of gene expression
    • 10.1186/1745-6150-1-33, 1634740, 17064414
    • Li S, Li YH, Wei T, Su EW, Duffin K, Liao B. Too much data, but little inter-changeability: a lesson learned from mining public data on tissue specificity of gene expression. Biol Direct 2006, 1:33. 10.1186/1745-6150-1-33, 1634740, 17064414.
    • (2006) Biol Direct , vol.1 , pp. 33
    • Li, S.1    Li, Y.H.2    Wei, T.3    Su, E.W.4    Duffin, K.5    Liao, B.6
  • 60
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie J. The significance of digital gene expression profiles. Genome Res 1997, 7:986-995.
    • (1997) Genome Res , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.2
  • 61
    • 77958058409 scopus 로고    scopus 로고
    • Functional annotation, genome organization and phylogeny of the grapevine (Vitis vinifera) terpene synthase gene family based on genome assembly, FLcDNA cloning, and enzyme assays
    • 10.1186/1471-2229-10-226, 3017849, 20964856
    • Martin D, Aubourg S, Schouwey M, Daviet L, Schalk M, Toub O, Lund S, Bohlmann J. Functional annotation, genome organization and phylogeny of the grapevine (Vitis vinifera) terpene synthase gene family based on genome assembly, FLcDNA cloning, and enzyme assays. BMC Plant Biology 2010, 10:226. 10.1186/1471-2229-10-226, 3017849, 20964856.
    • (2010) BMC Plant Biology , vol.10 , pp. 226
    • Martin, D.1    Aubourg, S.2    Schouwey, M.3    Daviet, L.4    Schalk, M.5    Toub, O.6    Lund, S.7    Bohlmann, J.8
  • 62
    • 0034518635 scopus 로고    scopus 로고
    • The comparison of gene expression from multiple cDNA libraries
    • 10.1101/gr.GR-1325RR, 313085, 11116099
    • Stekel DJ, Git Y, Falciani F. The comparison of gene expression from multiple cDNA libraries. Genome Res 2000, 10:2055-2061. 10.1101/gr.GR-1325RR, 313085, 11116099.
    • (2000) Genome Res , vol.10 , pp. 2055-2061
    • Stekel, D.J.1    Git, Y.2    Falciani, F.3
  • 63
    • 60549106873 scopus 로고    scopus 로고
    • Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies
    • 10.1186/1471-2164-10-30, 2633351, 19152685
    • Hornshoj H, Bendixen E, Conley LN, Andersen PK, Hedegaard J, Panitz F, Bendixen C. Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies. BMC Genomics 2009, 10:30. 10.1186/1471-2164-10-30, 2633351, 19152685.
    • (2009) BMC Genomics , vol.10 , pp. 30
    • Hornshoj, H.1    Bendixen, E.2    Conley, L.N.3    Andersen, P.K.4    Hedegaard, J.5    Panitz, F.6    Bendixen, C.7
  • 64
    • 70350125202 scopus 로고    scopus 로고
    • The CBL-CIPK Ca2+-decoding signaling network: function and perspectives
    • 10.1111/j.1469-8137.2009.02938.x, 19860013
    • Weinl S, Kudla J. The CBL-CIPK Ca2+-decoding signaling network: function and perspectives. New Phytol 2009, 184:517-528. 10.1111/j.1469-8137.2009.02938.x, 19860013.
    • (2009) New Phytol , vol.184 , pp. 517-528
    • Weinl, S.1    Kudla, J.2
  • 65
    • 73849141867 scopus 로고    scopus 로고
    • CBL-mediated targeting of CIPKs facilitates the decoding of calcium signals emanating from distinct cellular stores
    • Batistic O, Waadt R, Steinhorst L, Held K, Kudla J. CBL-mediated targeting of CIPKs facilitates the decoding of calcium signals emanating from distinct cellular stores. Plant J 2010, 61:211-222.
    • (2010) Plant J , vol.61 , pp. 211-222
    • Batistic, O.1    Waadt, R.2    Steinhorst, L.3    Held, K.4    Kudla, J.5
  • 66
    • 46349105601 scopus 로고    scopus 로고
    • Identification and characterization of "rd22" dehydration responsive gene in grapevine (Vitis vinifera L.)
    • 10.1016/j.crvi.2008.05.002, 18606386
    • Hanana M, Deluc L, Fouquet R, Daldoul S, Léon C, Barrieu F, Ghorbel A, Mliki A, Hamdi S. Identification and characterization of "rd22" dehydration responsive gene in grapevine (Vitis vinifera L.). C R Biol 2008, 331:569-578. 10.1016/j.crvi.2008.05.002, 18606386.
    • (2008) C R Biol , vol.331 , pp. 569-578
    • Hanana, M.1    Deluc, L.2    Fouquet, R.3    Daldoul, S.4    Léon, C.5    Barrieu, F.6    Ghorbel, A.7    Mliki, A.8    Hamdi, S.9
  • 67
    • 42249092243 scopus 로고    scopus 로고
    • Overexpression of snakin-1 gene enhances resistance to Rhizoctonia solani and Erwinia carotovora in transgenic potato plants
    • 10.1111/j.1364-3703.2008.00469.x, 18705874
    • Almasia N, Bazzini A, Hopp H, azquez-Rovere C. Overexpression of snakin-1 gene enhances resistance to Rhizoctonia solani and Erwinia carotovora in transgenic potato plants. Mol Plant Pathol 2008, 9:329-338. 10.1111/j.1364-3703.2008.00469.x, 18705874.
    • (2008) Mol Plant Pathol , vol.9 , pp. 329-338
    • Almasia, N.1    Bazzini, A.2    Hopp, H.3    azquez-Rovere, C.4
  • 68
    • 0345051044 scopus 로고    scopus 로고
    • Normalization and subtraction: two approaches to facilitate gene discovery
    • 10.1101/gr.6.9.791, 8889548
    • Bonaldo M, Lennon G, Soares M. Normalization and subtraction: two approaches to facilitate gene discovery. Genome Res 1996, 6:791-806. 10.1101/gr.6.9.791, 8889548.
    • (1996) Genome Res , vol.6 , pp. 791-806
    • Bonaldo, M.1    Lennon, G.2    Soares, M.3
  • 69
    • 49449090257 scopus 로고    scopus 로고
    • Identification of grapevine aquaporins and expression analysis in developing berries
    • 10.1007/s00299-008-0566-1, 18560835
    • Fouquet R, Leon C, Ollat N, Barrieu F. Identification of grapevine aquaporins and expression analysis in developing berries. Plant Cell Rep 2008, 27:1541-1550. 10.1007/s00299-008-0566-1, 18560835.
    • (2008) Plant Cell Rep , vol.27 , pp. 1541-1550
    • Fouquet, R.1    Leon, C.2    Ollat, N.3    Barrieu, F.4
  • 70
    • 71749115335 scopus 로고    scopus 로고
    • Identification and functional characterisation of aquaporins in the grapevine, Vitis vinifera
    • Shelden M, Howitt S, Kaiser B, Tyerman S. Identification and functional characterisation of aquaporins in the grapevine, Vitis vinifera. Funct Plant Biol 2009, 36:1065-1078.
    • (2009) Funct Plant Biol , vol.36 , pp. 1065-1078
    • Shelden, M.1    Howitt, S.2    Kaiser, B.3    Tyerman, S.4
  • 73
    • 34447096010 scopus 로고    scopus 로고
    • Expression of cinnamyl alcohol dehydrogenases and their putative homologues during Arabidopsis thaliana growth and development: Lessons for database annotations?
    • Kim SJ, Kim KW, Cho MH, Franceschi VR, Davin LB, Lewis NG. Expression of cinnamyl alcohol dehydrogenases and their putative homologues during Arabidopsis thaliana growth and development: Lessons for database annotations?. Phytochem 2007, 68:1957-1974.
    • (2007) Phytochem , vol.68 , pp. 1957-1974
    • Kim, S.J.1    Kim, K.W.2    Cho, M.H.3    Franceschi, V.R.4    Davin, L.B.5    Lewis, N.G.6
  • 75
    • 33845928213 scopus 로고    scopus 로고
    • Mutational analysis of the Medicago glycosyltransferase UGT71G1 reveals residues that control regioselectivity for (iso)flavonoid glycosylation
    • 10.1074/jbc.M605767200, 16982612
    • He XZ, Wang X, Dixon RA. Mutational analysis of the Medicago glycosyltransferase UGT71G1 reveals residues that control regioselectivity for (iso)flavonoid glycosylation. J Biol Chem 2006, 281:34441-34447. 10.1074/jbc.M605767200, 16982612.
    • (2006) J Biol Chem , vol.281 , pp. 34441-34447
    • He, X.Z.1    Wang, X.2    Dixon, R.A.3
  • 76
    • 4143092938 scopus 로고    scopus 로고
    • Alteration of sugar donor specificities of plant glycosyltransferases by a single point mutation
    • 10.1016/j.abb.2004.06.021, 15313223
    • Kubo A, Arai Y, Nagashima S, Yoshikawa T. Alteration of sugar donor specificities of plant glycosyltransferases by a single point mutation. Arch Biochem Biophys 2004, 429:198-203. 10.1016/j.abb.2004.06.021, 15313223.
    • (2004) Arch Biochem Biophys , vol.429 , pp. 198-203
    • Kubo, A.1    Arai, Y.2    Nagashima, S.3    Yoshikawa, T.4
  • 78
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bio assays with tobacco tissue cultures
    • Murashige T, Skoog F. A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiologia Plantarum 1962, 15:473-497.
    • (1962) Physiologia Plantarum , vol.15 , pp. 473-497
    • Murashige, T.1    Skoog, F.2
  • 79
    • 0014276538 scopus 로고
    • Nutrient requirements of suspension cultures of soybean root cells
    • 10.1016/0014-4827(68)90403-5, 5650857
    • Gamborg OL, Miller RA, Ojima K. Nutrient requirements of suspension cultures of soybean root cells. Exp Cell Res 1968, 50:151-158. 10.1016/0014-4827(68)90403-5, 5650857.
    • (1968) Exp Cell Res , vol.50 , pp. 151-158
    • Gamborg, O.L.1    Miller, R.A.2    Ojima, K.3
  • 80
    • 0141626903 scopus 로고    scopus 로고
    • ESTAP-an automated system for the analysis of EST data
    • 10.1093/bioinformatics/btg205, 15593407
    • Mao C, Cushman JC, May GD, Weller JW. ESTAP-an automated system for the analysis of EST data. Bioinformatics 2003, 19:1720-1722. 10.1093/bioinformatics/btg205, 15593407.
    • (2003) Bioinformatics , vol.19 , pp. 1720-1722
    • Mao, C.1    Cushman, J.C.2    May, G.D.3    Weller, J.W.4
  • 81
    • 0032703998 scopus 로고    scopus 로고
    • D2_cluster: a validated method for clustering EST and full-length cDNA sequences
    • 10.1101/gr.9.11.1135, 310833, 10568753
    • Burke J, Davison D, Hide W. d2_cluster: a validated method for clustering EST and full-length cDNA sequences. Genome Res 1999, 9:1135-1142. 10.1101/gr.9.11.1135, 310833, 10568753.
    • (1999) Genome Res , vol.9 , pp. 1135-1142
    • Burke, J.1    Davison, D.2    Hide, W.3
  • 82
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • 10.1101/gr.9.9.868, 310812, 10508846
    • Huang X, Madan A. CAP3: A DNA sequence assembly program. Genome Res 1999, 9:868-877. 10.1101/gr.9.9.868, 310812, 10508846.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 83
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 1998, 8:175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 85
    • 79959567112 scopus 로고    scopus 로고
    • CDNA Library 22274 [Vitis vinifera]
    • cDNA Library 22274 [Vitis vinifera]. , http://www.ncbi.nlm.nih.gov/UniGene/library.cgi?ORG=Vvi&LID=22274
  • 86
    • 79959566523 scopus 로고    scopus 로고
    • Batch Entrez
    • Batch Entrez. , http://www.ncbi.nlm.nih.gov/sites/batchentrez
  • 87
    • 79959571902 scopus 로고    scopus 로고
    • Index of /externe/Download/Projets/Projet_ML/data
    • Index of /externe/Download/Projets/Projet_ML/data. , http://www.genoscope.cns.fr/externe/Download/Projets/Projet_ML/data/
  • 88
    • 3042855210 scopus 로고    scopus 로고
    • UniGene: a unified view of the transcriptome
    • Bethesda (MD): National Center for Biotechnology Information
    • Pontius JU, Wagner L, Schuler GD. UniGene: a unified view of the transcriptome. The NCBI Handbook 2003, Bethesda (MD): National Center for Biotechnology Information.
    • (2003) The NCBI Handbook
    • Pontius, J.U.1    Wagner, L.2    Schuler, G.D.3
  • 89
    • 79959558609 scopus 로고    scopus 로고
    • DotPlot | Download DotPlot software for free at SourceForge.net
    • DotPlot | Download DotPlot software for free at SourceForge.net. , http://sourceforge.net/projects/dotplot/
  • 90
    • 84870627646 scopus 로고    scopus 로고
    • Eclipse - The Eclipse Foundation open source community website
    • Eclipse - The Eclipse Foundation open source community website. , http://www.eclipse.org/
  • 92
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • 10.1073/pnas.95.25.14863, 24541, 9843981
    • Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998, 95:14863-14868. 10.1073/pnas.95.25.14863, 24541, 9843981.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 93
    • 79959566350 scopus 로고    scopus 로고
    • VitisNet
    • VitisNet. , http://www.sdstate.edu/aes/vitis/pathways.cfm
  • 94
    • 79959542202 scopus 로고    scopus 로고
    • IDEG6 software home page
    • IDEG6 software home page. , http://telethon.bio.unipd.it/bioinfo/IDEG6_form/
  • 95
    • 79959567949 scopus 로고    scopus 로고
    • Primer designing tool
    • Primer designing tool. , http://www.ncbi.nlm.nih.gov/tools/primer-blast/index.cgi?LINK_LOC=BlastHome
  • 96
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 2000, 132:365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 97
    • 33751234803 scopus 로고    scopus 로고
    • An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
    • 10.1186/1471-2229-6-27, 1654153, 17105665
    • Reid KE, Olsson N, Schlosser J, Peng F, Lund ST. An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol 2006, 6:27. 10.1186/1471-2229-6-27, 1654153, 17105665.
    • (2006) BMC Plant Biol , vol.6 , pp. 27
    • Reid, K.E.1    Olsson, N.2    Schlosser, J.3    Peng, F.4    Lund, S.T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.