메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: Genomic tools for environmental monitoring

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTOME; COMPLEMENTARY RNA; MESSENGER RNA;

EID: 79955810928     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-234     Document Type: Article
Times cited : (118)

References (77)
  • 1
    • 79957927661 scopus 로고    scopus 로고
    • FAO
    • FAO FAO., http://www.fao.org/fishery/culturedspecies/Ruditapes_philippinarum/en
  • 3
    • 33845989082 scopus 로고    scopus 로고
    • Development of microsatellite markers for the Manila clam Ruditapes philippinarum
    • Yasuda N, Nagai S, Yamaguchi S, Lian CL, Hamaguchi M. Development of microsatellite markers for the Manila clam Ruditapes philippinarum. Mol Ecol Notes 2007, 7:43-45.
    • (2007) Mol Ecol Notes , vol.7 , pp. 43-45
    • Yasuda, N.1    Nagai, S.2    Yamaguchi, S.3    Lian, C.L.4    Hamaguchi, M.5
  • 4
    • 77953081897 scopus 로고    scopus 로고
    • Microarray-Based Identification of Gonad Transcripts Differentially Expressed Between Lines of Pacific Oyster Selected to Be Resistant or Susceptible to Summer Mortality
    • Fleury E, Moal J, Boulo V, Daniel JY, Mazurais D, Hénaut A, Corporeau C, Boudry P, Favrel P, Huvet A. Microarray-Based Identification of Gonad Transcripts Differentially Expressed Between Lines of Pacific Oyster Selected to Be Resistant or Susceptible to Summer Mortality. Mar Biotechnol (NY) 2010, 12:326-39.
    • (2010) Mar Biotechnol (NY) , vol.12 , pp. 326-339
    • Fleury, E.1    Moal, J.2    Boulo, V.3    Daniel, J.Y.4    Mazurais, D.5    Hénaut, A.6    Corporeau, C.7    Boudry, P.8    Favrel, P.9    Huvet, A.10
  • 5
    • 75449092200 scopus 로고    scopus 로고
    • Hepatic gene expression in flounder chronically exposed to multiply polluted estuarine sediment: Absence of classical exposure 'biomarker' signals and induction of inflammatory, innate immune and apoptotic pathways
    • Leaver MJ, Diab A, Boukouvala E, Williams TD, Chipman JK, Moffat CF, Robinson CD, George SG. Hepatic gene expression in flounder chronically exposed to multiply polluted estuarine sediment: Absence of classical exposure 'biomarker' signals and induction of inflammatory, innate immune and apoptotic pathways. Aquat Toxicol 2009, 96:234-245.
    • (2009) Aquat Toxicol , vol.96 , pp. 234-245
    • Leaver, M.J.1    Diab, A.2    Boukouvala, E.3    Williams, T.D.4    Chipman, J.K.5    Moffat, C.F.6    Robinson, C.D.7    George, S.G.8
  • 6
    • 54049152301 scopus 로고    scopus 로고
    • Hepatic transcriptomic profiles of European flounder (Platichthys flesus) from field sites and computational approaches to predict site from stress gene responses following exposure to model toxicants
    • 10.1016/j.aquatox.2008.07.020, 18823667
    • Falciani F, Diab AM, Sabine V, Williams TD, Ortega F, George SG, Chipman JK. Hepatic transcriptomic profiles of European flounder (Platichthys flesus) from field sites and computational approaches to predict site from stress gene responses following exposure to model toxicants. Aquat Toxicol 2008, 90:92-101. 10.1016/j.aquatox.2008.07.020, 18823667.
    • (2008) Aquat Toxicol , vol.90 , pp. 92-101
    • Falciani, F.1    Diab, A.M.2    Sabine, V.3    Williams, T.D.4    Ortega, F.5    George, S.G.6    Chipman, J.K.7
  • 8
    • 79959709321 scopus 로고    scopus 로고
    • Biomonitoring approach with mussel Mytilus galloprovincialis (Lmk) and clam Ruditapes philippinarum (Adams and Reeve, 1850) in the Lagoon of Venice
    • Moschino V, Delaney E, Meneghetti F, Ros LD. Biomonitoring approach with mussel Mytilus galloprovincialis (Lmk) and clam Ruditapes philippinarum (Adams and Reeve, 1850) in the Lagoon of Venice. Environ Monit Assess 2010,
    • (2010) Environ Monit Assess
    • Moschino, V.1    Delaney, E.2    Meneghetti, F.3    Ros, L.D.4
  • 9
    • 77949367798 scopus 로고    scopus 로고
    • Biomarker responses and contamination levels in the clam Ruditapes philippinarum for biomonitoring the Lagoon of Venice (Italy)
    • 10.1039/b920536e, 20445868
    • Matozzo V, Binelli A, Parolini M, Locatello L, Marin MG. Biomarker responses and contamination levels in the clam Ruditapes philippinarum for biomonitoring the Lagoon of Venice (Italy). J Environ Monit 2010, 12:776-86. 10.1039/b920536e, 20445868.
    • (2010) J Environ Monit , vol.12 , pp. 776-786
    • Matozzo, V.1    Binelli, A.2    Parolini, M.3    Locatello, L.4    Marin, M.G.5
  • 12
    • 44949213758 scopus 로고    scopus 로고
    • Development of a 37 k high-density oligonucleotide microarray: a new tool for functional genome research in rainbow trout
    • Salem M, Kenney PB, Rexroad CE III, Yao J. Development of a 37 k high-density oligonucleotide microarray: a new tool for functional genome research in rainbow trout. J Fish Biol 2008, 72:2187-2206.
    • (2008) J Fish Biol , vol.72 , pp. 2187-2206
    • Salem, M.1    Kenney, P.B.2    Rexroad CE, I.I.I.3    Yao, J.4
  • 13
    • 44949102185 scopus 로고    scopus 로고
    • Identification of development and tissue-specific gene expression in the fathead minnow Pimephales promelas, Rafinesque using computational and DNA microarray methods
    • Kane MD, Sringer JA, Iannotti NV, Gough E, Johns SM, Schlueter SD, Sepulveda MS. Identification of development and tissue-specific gene expression in the fathead minnow Pimephales promelas, Rafinesque using computational and DNA microarray methods. J Fish Biol 2008, 72:2341-2353.
    • (2008) J Fish Biol , vol.72 , pp. 2341-2353
    • Kane, M.D.1    Sringer, J.A.2    Iannotti, N.V.3    Gough, E.4    Johns, S.M.5    Schlueter, S.D.6    Sepulveda, M.S.7
  • 14
    • 44949144842 scopus 로고    scopus 로고
    • Altered gene expression in the brain and liver of female fathead minnows Pimephales promelas Rafinesque exposed to fadrozole
    • Villeneuve DL, Knoebl I, Larkin P, Miracle AL, Carter BJ, Denslow ND, Ankley GT. Altered gene expression in the brain and liver of female fathead minnows Pimephales promelas Rafinesque exposed to fadrozole. J Fish Biol 2008, 72:2281-2340.
    • (2008) J Fish Biol , vol.72 , pp. 2281-2340
    • Villeneuve, D.L.1    Knoebl, I.2    Larkin, P.3    Miracle, A.L.4    Carter, B.J.5    Denslow, N.D.6    Ankley, G.T.7
  • 15
    • 44949195716 scopus 로고    scopus 로고
    • Use of a 15 k gene microarray to determine gene expression changes in response to acute and chronic methylmercury exposure in the fathead minnow Pimephales promelas Rafinesque
    • Klaper R, Carter BJ, Richter CA, Drevnick PE, Sandheinrich MB, Tillitt DE. Use of a 15 k gene microarray to determine gene expression changes in response to acute and chronic methylmercury exposure in the fathead minnow Pimephales promelas Rafinesque. J Fish Biol 2008, 72:2207-2280.
    • (2008) J Fish Biol , vol.72 , pp. 2207-2280
    • Klaper, R.1    Carter, B.J.2    Richter, C.A.3    Drevnick, P.E.4    Sandheinrich, M.B.5    Tillitt, D.E.6
  • 16
    • 67650158441 scopus 로고    scopus 로고
    • Gene expression profile of grass shrimp Palaemonetes pugio exposed to chronic hypoxia
    • 10.1016/j.cbd.2009.03.004, 20403760
    • Li T, Brouwer M. Gene expression profile of grass shrimp Palaemonetes pugio exposed to chronic hypoxia. Comp Biochem Physiol Part D Genomics Proteomics 2009, 4:196-208. 10.1016/j.cbd.2009.03.004, 20403760.
    • (2009) Comp Biochem Physiol Part D Genomics Proteomics , vol.4 , pp. 196-208
    • Li, T.1    Brouwer, M.2
  • 20
    • 77957675520 scopus 로고    scopus 로고
    • High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus
    • 10.1186/1471-2164-11-559, 3091708, 20937131
    • Bettencourt R, Pinheiro M, Egas C, Gomes P, Afonso M, Shank T, Santos RS. High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus. BMC Genomics 2010, 11:559. 10.1186/1471-2164-11-559, 3091708, 20937131.
    • (2010) BMC Genomics , vol.11 , pp. 559
    • Bettencourt, R.1    Pinheiro, M.2    Egas, C.3    Gomes, P.4    Afonso, M.5    Shank, T.6    Santos, R.S.7
  • 21
    • 79957897636 scopus 로고    scopus 로고
    • RuphiBase
    • RuphiBase. , http://compgen.bio.unipd.it/ruphibase/
  • 22
    • 79957879402 scopus 로고    scopus 로고
    • GEO data base
    • GEO data base. , http://www.ncbi.nlm.nih.gov/geo/
  • 23
    • 79957887274 scopus 로고    scopus 로고
    • DAVID
    • DAVID. , http://david.abcc.ncifcrf.gov/
  • 24
    • 66349094918 scopus 로고    scopus 로고
    • Whole genome transcriptome analysis
    • 10.4161/rna.6.2.7931, 19875928
    • Forrest AR, Carninci P. Whole genome transcriptome analysis. RNA Biol 2009, 6:107-12. 10.4161/rna.6.2.7931, 19875928.
    • (2009) RNA Biol , vol.6 , pp. 107-112
    • Forrest, A.R.1    Carninci, P.2
  • 25
    • 34249088350 scopus 로고    scopus 로고
    • Genome-wide transcription and the implications for genomic organization
    • Kapranov P, Willingham AT, Gingeras TR. Genome-wide transcription and the implications for genomic organization. Nat Rev Genet 2007, 8:413-23.
    • (2007) Nat Rev Genet , vol.8 , pp. 413-423
    • Kapranov, P.1    Willingham, A.T.2    Gingeras, T.R.3
  • 26
    • 77951115595 scopus 로고    scopus 로고
    • RNA dust: where are the genes?
    • 10.1093/dnares/dsq006, 2853385, 20211845
    • Carninci P. RNA dust: where are the genes?. DNA Res 2010, 17:51-9. 10.1093/dnares/dsq006, 2853385, 20211845.
    • (2010) DNA Res , vol.17 , pp. 51-59
    • Carninci, P.1
  • 27
    • 78651481549 scopus 로고    scopus 로고
    • Transcribed dark matter: meaning or myth?
    • Ponting CP, Grant Belgard T. Transcribed dark matter: meaning or myth?. Hum Mol Genet 2010, 19:162-168.
    • (2010) Hum Mol Genet , vol.19 , pp. 162-168
    • Ponting, C.P.1    Grant Belgard, T.2
  • 28
    • 33746785696 scopus 로고    scopus 로고
    • Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species
    • 10.1093/nar/gkl473, 1524920, 16849434
    • Zhang Y, Liu XS, Liu QR, Wei L. Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species. Nucleic Acids Res 2006, 34:3465-3475. 10.1093/nar/gkl473, 1524920, 16849434.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3465-3475
    • Zhang, Y.1    Liu, X.S.2    Liu, Q.R.3    Wei, L.4
  • 29
    • 33751536642 scopus 로고    scopus 로고
    • Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms
    • 10.1038/sj.embor.7400857, 1794690, 17139297
    • Lapidot M, Pilpel Y. Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms. EMBO Rep 2006, 7:1216-1222. 10.1038/sj.embor.7400857, 1794690, 17139297.
    • (2006) EMBO Rep , vol.7 , pp. 1216-1222
    • Lapidot, M.1    Pilpel, Y.2
  • 30
    • 67849105060 scopus 로고    scopus 로고
    • Naturally occurring antisense RNA: function and mechanisms of action
    • 10.1097/MNH.0b013e32832cb982, 19491676
    • Werner A, Sayer JA. Naturally occurring antisense RNA: function and mechanisms of action. Curr Opin Nephrol Hypertens 2009, 18:343-349. 10.1097/MNH.0b013e32832cb982, 19491676.
    • (2009) Curr Opin Nephrol Hypertens , vol.18 , pp. 343-349
    • Werner, A.1    Sayer, J.A.2
  • 31
    • 33750935097 scopus 로고    scopus 로고
    • Biomarkers in environmental and human health risk assessment
    • 10.1016/j.marpolbul.2006.08.013, 17011590
    • Galloway TS. Biomarkers in environmental and human health risk assessment. Mar Pollut Bull 2006, 53:606-13. 10.1016/j.marpolbul.2006.08.013, 17011590.
    • (2006) Mar Pollut Bull , vol.53 , pp. 606-613
    • Galloway, T.S.1
  • 32
    • 71649089090 scopus 로고    scopus 로고
    • Overview of ecotoxicological studies performed in the Venice Lagoon (Italy)
    • 10.1016/j.envint.2009.07.017, 19781785
    • Losso C, Ghirardini AV. Overview of ecotoxicological studies performed in the Venice Lagoon (Italy). Environ Int 2010, 36:92-121. 10.1016/j.envint.2009.07.017, 19781785.
    • (2010) Environ Int , vol.36 , pp. 92-121
    • Losso, C.1    Ghirardini, A.V.2
  • 33
    • 33745861702 scopus 로고    scopus 로고
    • Lysosomal and autophagic reactions as predictive indicators of environmental impact in aquatic animals
    • Moore MN, Allen JI, McVeigh A, Shaw J. Lysosomal and autophagic reactions as predictive indicators of environmental impact in aquatic animals. Autophagy 2006, 2:217-20.
    • (2006) Autophagy , vol.2 , pp. 217-220
    • Moore, M.N.1    Allen, J.I.2    McVeigh, A.3    Shaw, J.4
  • 34
    • 77951768486 scopus 로고    scopus 로고
    • Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids
    • 10.1016/j.cell.2010.02.024, 3024592, 20381137
    • Sancak Y, Bar-Peled L, Zoncu R, Markhard AL, Nada S, Sabatini DM. Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids. Cell 2010, 141:290-303. 10.1016/j.cell.2010.02.024, 3024592, 20381137.
    • (2010) Cell , vol.141 , pp. 290-303
    • Sancak, Y.1    Bar-Peled, L.2    Zoncu, R.3    Markhard, A.L.4    Nada, S.5    Sabatini, D.M.6
  • 35
    • 77951660067 scopus 로고    scopus 로고
    • Involvement of autophagy via mammalian target of rapamycin (mTOR) inhibition in tributyltin-induced neuronal cell death
    • 10.2131/jts.35.245, 20371977
    • Nakatsu Y, Kotake Y, Takai N, Ohta S. Involvement of autophagy via mammalian target of rapamycin (mTOR) inhibition in tributyltin-induced neuronal cell death. J Toxicol Sci 2010, 35:245-51. 10.2131/jts.35.245, 20371977.
    • (2010) J Toxicol Sci , vol.35 , pp. 245-251
    • Nakatsu, Y.1    Kotake, Y.2    Takai, N.3    Ohta, S.4
  • 38
    • 19544377786 scopus 로고    scopus 로고
    • A new class of glutathione S-transferase from the hepatopancreas of the red sea bream Pagrus major
    • 10.1042/BJ20041578, 1186719, 15610066
    • Konishi T, Kato K, Araki T, Shiraki K, Takagi M, Tamaru Y. A new class of glutathione S-transferase from the hepatopancreas of the red sea bream Pagrus major. Biochem J 2005, 388:299-307. 10.1042/BJ20041578, 1186719, 15610066.
    • (2005) Biochem J , vol.388 , pp. 299-307
    • Konishi, T.1    Kato, K.2    Araki, T.3    Shiraki, K.4    Takagi, M.5    Tamaru, Y.6
  • 39
    • 51249118982 scopus 로고    scopus 로고
    • Proteomic identification, cDNA cloning and enzymatic activity of glutathione S-transferases from the generalist marine gastropod Cyphoma gibbosum
    • 10.1016/j.abb.2008.07.007, 18671936
    • Whalen KE, Morin D, Lin CY, Tjeerdema RS, Goldstone JV, Hahn ME. Proteomic identification, cDNA cloning and enzymatic activity of glutathione S-transferases from the generalist marine gastropod Cyphoma gibbosum. Arch Biochem Biophys 2008, 478:7-17. 10.1016/j.abb.2008.07.007, 18671936.
    • (2008) Arch Biochem Biophys , vol.478 , pp. 7-17
    • Whalen, K.E.1    Morin, D.2    Lin, C.Y.3    Tjeerdema, R.S.4    Goldstone, J.V.5    Hahn, M.E.6
  • 40
    • 33845454824 scopus 로고    scopus 로고
    • Assessment of ecological risk from bioaccumulation of PCDD/Fs and dioxin-like PCBs in a coastal lagoon
    • 10.1016/j.envint.2006.06.023, 16914204
    • Micheletti C, Critto A, Marcomini A. Assessment of ecological risk from bioaccumulation of PCDD/Fs and dioxin-like PCBs in a coastal lagoon. Environment International 2007, 33:45-55. 10.1016/j.envint.2006.06.023, 16914204.
    • (2007) Environment International , vol.33 , pp. 45-55
    • Micheletti, C.1    Critto, A.2    Marcomini, A.3
  • 41
    • 0008067026 scopus 로고    scopus 로고
    • Allozymic characterization and genetic relationships among four species of Tapetinae (Bivalvia Veneridae)
    • Passamonti M, Mantovani B, Scali V. Allozymic characterization and genetic relationships among four species of Tapetinae (Bivalvia Veneridae). Italian Journal of Zoology 1997, 64:117-124.
    • (1997) Italian Journal of Zoology , vol.64 , pp. 117-124
    • Passamonti, M.1    Mantovani, B.2    Scali, V.3
  • 42
    • 0037403495 scopus 로고    scopus 로고
    • Metal Accumulation and Binding Protein Induction in Mytilus galloprovincialis, Scapharca inaequivalvis, and Tapes philippinarum from the Lagoon of Venice
    • 10.1007/s00244-002-1262-8, 12712278
    • Irato P, Santovito G, Cassini A, Piccinni E, Albergoni V. Metal Accumulation and Binding Protein Induction in Mytilus galloprovincialis, Scapharca inaequivalvis, and Tapes philippinarum from the Lagoon of Venice. Arch Environ Contam Toxicol 2003, 44:476-484. 10.1007/s00244-002-1262-8, 12712278.
    • (2003) Arch Environ Contam Toxicol , vol.44 , pp. 476-484
    • Irato, P.1    Santovito, G.2    Cassini, A.3    Piccinni, E.4    Albergoni, V.5
  • 43
    • 79959709321 scopus 로고    scopus 로고
    • Biomonitoring approach with mussel Mytilus galloprovincialis (Lmk) and clam Ruditapes philippinarum (Adams and Reeve, 1850) in the Lagoon of Venice
    • Moschino V, Delaney E, Meneghetti F, Ros LD. Biomonitoring approach with mussel Mytilus galloprovincialis (Lmk) and clam Ruditapes philippinarum (Adams and Reeve, 1850) in the Lagoon of Venice. Environ Monit Assess 2010,
    • (2010) Environ Monit Assess
    • Moschino, V.1    Delaney, E.2    Meneghetti, F.3    Ros, L.D.4
  • 44
    • 0037025812 scopus 로고    scopus 로고
    • Distribution of heavy metals in sediments of the Venice Lagoon: The role of the industrial area
    • 10.1016/S0048-9697(02)00040-2, 12186291
    • Bellucci LG, Frignani M, Paolucci D, Ravanelli M. Distribution of heavy metals in sediments of the Venice Lagoon: The role of the industrial area. Science of the Total Environment 2002, 295:35-49. 10.1016/S0048-9697(02)00040-2, 12186291.
    • (2002) Science of the Total Environment , vol.295 , pp. 35-49
    • Bellucci, L.G.1    Frignani, M.2    Paolucci, D.3    Ravanelli, M.4
  • 45
    • 33745996375 scopus 로고    scopus 로고
    • The changing state of contamination in the Lagoon of Venice. Part 2: Heavy metals
    • 10.1016/j.chemosphere.2005.12.033, 16469357
    • Bernardello M, Secco T, Pellizzato F, Chinellato M, Sfriso A, Pavoni B. The changing state of contamination in the Lagoon of Venice. Part 2: Heavy metals. Chemosphere 2006, 64:1334-1345. 10.1016/j.chemosphere.2005.12.033, 16469357.
    • (2006) Chemosphere , vol.64 , pp. 1334-1345
    • Bernardello, M.1    Secco, T.2    Pellizzato, F.3    Chinellato, M.4    Sfriso, A.5    Pavoni, B.6
  • 46
    • 2942582641 scopus 로고    scopus 로고
    • Induction of phenol-type sulfotransferase and glucuronosyltransferase in channel catfish and mummichog
    • 10.1016/j.marenvres.2004.03.041, 15178078
    • Gaworecki KM, Rice CD, van den Hurk P. Induction of phenol-type sulfotransferase and glucuronosyltransferase in channel catfish and mummichog. Mar Environ Res 2004, 58:525-528. 10.1016/j.marenvres.2004.03.041, 15178078.
    • (2004) Mar Environ Res , vol.58 , pp. 525-528
    • Gaworecki, K.M.1    Rice, C.D.2    van den Hurk, P.3
  • 47
    • 68149140181 scopus 로고    scopus 로고
    • Gene expression profiling in Atlantic cod (Gadus morhua L.) from two contaminated sites using a custom-made cDNA microarray
    • 10.1897/08-517.1, 19364188
    • Lie KK, Lanzen A, Breilid H, Olsvik PA. Gene expression profiling in Atlantic cod (Gadus morhua L.) from two contaminated sites using a custom-made cDNA microarray. Environ Toxicol Chem 2009, 28:1711-21. 10.1897/08-517.1, 19364188.
    • (2009) Environ Toxicol Chem , vol.28 , pp. 1711-1721
    • Lie, K.K.1    Lanzen, A.2    Breilid, H.3    Olsvik, P.A.4
  • 49
    • 59349106475 scopus 로고    scopus 로고
    • Gene expression of acetylcholinesterase in hybrid catfish (Clarias gariepinus X Clarias macrocephalus) exposed to chlorpyrifos and carbaryl
    • Somnuek C, Boonphakdee C, Cheevaporn V, Tanaka K. Gene expression of acetylcholinesterase in hybrid catfish (Clarias gariepinus X Clarias macrocephalus) exposed to chlorpyrifos and carbaryl. J Environ Biol 2009, 30:83-8.
    • (2009) J Environ Biol , vol.30 , pp. 83-88
    • Somnuek, C.1    Boonphakdee, C.2    Cheevaporn, V.3    Tanaka, K.4
  • 50
    • 11244303549 scopus 로고    scopus 로고
    • Characterisation and expression of four mRNA sequences encoding glutathione S-transferases pi, mu, omega and sigma classes in the Pacific oyster Crassostrea gigas exposed to hydrocarbons and pesticides
    • Boutet I, Tanguy A, Moraga D. Characterisation and expression of four mRNA sequences encoding glutathione S-transferases pi, mu, omega and sigma classes in the Pacific oyster Crassostrea gigas exposed to hydrocarbons and pesticides. Marine Biology 2004, 146:53-64.
    • (2004) Marine Biology , vol.146 , pp. 53-64
    • Boutet, I.1    Tanguy, A.2    Moraga, D.3
  • 51
    • 77952743399 scopus 로고    scopus 로고
    • Cloning, characterization and tissue distribution of a pi-class glutathione S-transferase from clam (Venerupis philippinarum): Response to benzo[alpha]pyrene exposure
    • 10.1016/j.cbpc.2010.03.011, 20382262
    • Xu C, Pan L, Liu N, Wang L, Miao J. Cloning, characterization and tissue distribution of a pi-class glutathione S-transferase from clam (Venerupis philippinarum): Response to benzo[alpha]pyrene exposure. Comp Biochem Physiol C Toxicol Pharmacol 2010, 152:160-166. 10.1016/j.cbpc.2010.03.011, 20382262.
    • (2010) Comp Biochem Physiol C Toxicol Pharmacol , vol.152 , pp. 160-166
    • Xu, C.1    Pan, L.2    Liu, N.3    Wang, L.4    Miao, J.5
  • 52
    • 79957915513 scopus 로고    scopus 로고
    • Main partitioning criteria for the characterization of the health status in the freshwater mussel Anodonta cygnea from spontaneously polluted area in western ukraine
    • Falfushynska HI, Gnatyshyna LL, Golubev AP, Stoliar OB. Main partitioning criteria for the characterization of the health status in the freshwater mussel Anodonta cygnea from spontaneously polluted area in western ukraine. Environ Toxicol 2010,
    • (2010) Environ Toxicol
    • Falfushynska, H.I.1    Gnatyshyna, L.L.2    Golubev, A.P.3    Stoliar, O.B.4
  • 54
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • 10.1111/j.1365-294X.2008.03666.x, 18266620
    • Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol Ecol 2008, 17:1636-47. 10.1111/j.1365-294X.2008.03666.x, 18266620.
    • (2008) Mol Ecol , vol.17 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3    Frilander, M.J.4    Crawford, D.L.5    Hanski, I.6    Marden, J.H.7
  • 55
    • 34548188741 scopus 로고    scopus 로고
    • Self-eating and self-killing:crosstalk between autophagy and apoptosis
    • 10.1038/nrm2239, 17717517
    • Maiuri MC, Zalckvar E, Kimchi A, Kroemer G. Self-eating and self-killing:crosstalk between autophagy and apoptosis. Nat Rev Mol Cell Biol 2007, 8:741-52. 10.1038/nrm2239, 17717517.
    • (2007) Nat Rev Mol Cell Biol , vol.8 , pp. 741-752
    • Maiuri, M.C.1    Zalckvar, E.2    Kimchi, A.3    Kroemer, G.4
  • 56
    • 64149105942 scopus 로고    scopus 로고
    • In vivo RNA interference in oyster--vasa silencing inhibits germ cell development
    • 10.1111/j.1742-4658.2009.06982.x, 19476495
    • Fabioux C, Corporeau C, Quillien V, Favrel P, Huvet A. In vivo RNA interference in oyster--vasa silencing inhibits germ cell development. FEBS J 2009, 276:2566-73. 10.1111/j.1742-4658.2009.06982.x, 19476495.
    • (2009) FEBS J , vol.276 , pp. 2566-2573
    • Fabioux, C.1    Corporeau, C.2    Quillien, V.3    Favrel, P.4    Huvet, A.5
  • 57
    • 0023277545 scopus 로고
    • Single step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski P, Sacchi. Single step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 1987, 162:156-159.
    • (1987) Anal Biochem , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi2
  • 59
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • 1464427, 16056220
    • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380. 1464427, 16056220.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5    Bemben, L.A.6
  • 60
    • 3042615882 scopus 로고    scopus 로고
    • Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
    • 10.1101/gr.1917404, 419793, 15140833
    • Chevreux B, Pfisterer T, Drescher B, et al. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res 2004, 14:1147-59. 10.1101/gr.1917404, 419793, 15140833.
    • (2004) Genome Res , vol.14 , pp. 1147-1159
    • Chevreux, B.1    Pfisterer, T.2    Drescher, B.3
  • 61
    • 79957884989 scopus 로고    scopus 로고
    • UniProt
    • UniProt. , http://www.ebi.ac.uk/uniprot/
  • 62
    • 84870923207 scopus 로고    scopus 로고
    • Ensembl Genome Browser
    • Ensembl Genome Browser. , http://www.ensembl.org/index.html
  • 63
    • 79957893268 scopus 로고    scopus 로고
    • Lottia gigantea v1.0 database
    • Lottia gigantea v1.0 database. , http://genome.jgi-psf.org/Lotgi1/Lotgi1.download.ftp.html
  • 64
    • 84871349968 scopus 로고    scopus 로고
    • NCBI UniGene database
    • NCBI UniGene database. , http://www.ncbi.nlm.nih.gov/unigene
  • 65
    • 79957905796 scopus 로고    scopus 로고
    • Sigenae
    • Sigenae. , http://www.sigenae.org/
  • 66
    • 79957922866 scopus 로고    scopus 로고
    • Bay scallop EST project
    • Bay scallop EST project. , http://www.mbl.edu/aquaculture/EST/
  • 68
    • 84886763841 scopus 로고    scopus 로고
    • Geneontology
    • Geneontology. , http://www.geneontology.org/GO.slims.shtml
  • 69
    • 67650721347 scopus 로고    scopus 로고
    • CateGOrizer: A web-based program to batch analyze gene ontology classification categories
    • Hu ZL, Bao J, Reecy JM. CateGOrizer: A web-based program to batch analyze gene ontology classification categories. Online J Bioinform 2008, 9:108-112.
    • (2008) Online J Bioinform , vol.9 , pp. 108-112
    • Hu, Z.L.1    Bao, J.2    Reecy, J.M.3
  • 70
    • 38049163163 scopus 로고    scopus 로고
    • Agilent eArray
    • Agilent eArray. , https://earray.chem.agilent.com/earray/
  • 71
    • 84870410396 scopus 로고    scopus 로고
    • R statistical software
    • R statistical software. , http://www.r-project.org
  • 72
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • 10.1073/pnas.091062498, 33173, 11309499
    • Thusher V, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001, 98:5116-5121. 10.1073/pnas.091062498, 33173, 11309499.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5116-5121
    • Thusher, V.1    Tibshirani, R.2    Chu, G.3
  • 73
    • 84877697041 scopus 로고    scopus 로고
    • Ensembl BioMart
    • Ensembl BioMart. , http://www.ensembl.org/biomart/martview/
  • 74
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for multiple sequence alignments
    • 10.1006/jmbi.2000.4042, 10964570
    • Notredame C, Higgins D, Heringa J. T-Coffee: A novel method for multiple sequence alignments. Journal of Molecular Biology 2000, 302:205-217. 10.1006/jmbi.2000.4042, 10964570.
    • (2000) Journal of Molecular Biology , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.2    Heringa, J.3
  • 75
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 2000, 17:540-552.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 540-552
    • Castresana, J.1
  • 76
    • 79960928128 scopus 로고    scopus 로고
    • Inferring Phylogenies. Sinauer, Sunderland, MA
    • Felsenstein J. Inferring Phylogenies. Sinauer, Sunderland, MA. Syst Biol 2004, 53:669-670.
    • (2004) Syst Biol , vol.53 , pp. 669-670
    • Felsenstein, J.1
  • 77
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520, 14530136
    • Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:696-704. 10.1080/10635150390235520, 14530136.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.