메뉴 건너뛰기




Volumn 118, Issue 1, 2010, Pages 1-5

Integrating omic technologies into aquatic ecological risk assessment and environmental monitoring: Hurdles, achievements, and future outlook

(33)  Van Aggelen, Graham a   Ankley, Gerald T b   Baldwin, William S c   Bearden, Daniel W d   Benson, William H b   Chipman, J Kevin e   Collette, Tim W b   Craft, John A f   Denslow, Nancy D g   Embry, Michael R h   Falciani, Francesco e   George, Stephen G i   Helbing, Caren C j   Hoekstra, Paul F k   Iguchi, Taisen l   Kagami, Yoshi m   Katsiadaki, Ioanna n   Kille, Peter o   Liu, Li g   Lord, Peter G p   more..


Author keywords

Environment; Environmental monitoring; Fish; Metabolomics; Microarray; Regulatory toxicology; Transcriptomics

Indexed keywords

AQUATIC ENVIRONMENT; BIOINFORMATICS; CASE STUDY; ECOTOXICOLOGY; ENVIRONMENTAL MONITORING; FUNDING; GOVERNMENT; INFORMATION TECHNOLOGY; METABOLOMICS; NOTE; OMIC TECHNOLOGY; POLLUTION CONTROL; PRIORITY JOURNAL; PROSPECTIVE STUDY; RISK ASSESSMENT; TRAINING;

EID: 77149124246     PISSN: 00916765     EISSN: 15529924     Source Type: Journal    
DOI: 10.1289/ehp.0900985     Document Type: Note
Times cited : (138)

References (34)
  • 1
    • 17544366734 scopus 로고    scopus 로고
    • Adelman DE. 2005. The false promise of the genomics revolution for environmental law. Harvard Environ Law Rev 29(1):117-177. Available: /www.law.harvard.edu/students/orgs/elr/vol29-1/adelman.pdf [accessed 16 November 2009].
    • Adelman DE. 2005. The false promise of the genomics revolution for environmental law. Harvard Environ Law Rev 29(1):117-177. Available: /www.law.harvard.edu/students/orgs/elr/vol29-1/adelman.pdf [accessed 16 November 2009].
  • 3
    • 43049178174 scopus 로고    scopus 로고
    • Relationship of plasma sex steroid concentrations in female fathead minnows to reproductive success and population status
    • Ankley GT, Miller DH, Jensen KM, Villeneuve DL, Martinovic D. 2008a. Relationship of plasma sex steroid concentrations in female fathead minnows to reproductive success and population status. Aquat Toxicol 88(1):69-74.
    • (2008) Aquat Toxicol , vol.88 , Issue.1 , pp. 69-74
    • Ankley, G.T.1    Miller, D.H.2    Jensen, K.M.3    Villeneuve, D.L.4    Martinovic, D.5
  • 6
    • 34547557137 scopus 로고    scopus 로고
    • Knowledge transfer initiative between molecular biologists and environmental researchers and regulators
    • Blunt RE, Walsh KA, Ashton DK, Viant MR, Chipman JK. 2007. Knowledge transfer initiative between molecular biologists and environmental researchers and regulators. Environ Sci Pollut Res Int 14(5):293-296.
    • (2007) Environ Sci Pollut Res Int , vol.14 , Issue.5 , pp. 293-296
    • Blunt, R.E.1    Walsh, K.A.2    Ashton, D.K.3    Viant, M.R.4    Chipman, J.K.5
  • 7
    • 31144473900 scopus 로고    scopus 로고
    • Toxicogenomics in risk assessment: Applications and needs
    • Boverhof DR, Zacharewski TR. 2006. Toxicogenomics in risk assessment: applications and needs. Toxicol Sci 89(2):352-360.
    • (2006) Toxicol Sci , vol.89 , Issue.2 , pp. 352-360
    • Boverhof, D.R.1    Zacharewski, T.R.2
  • 8
    • 34250827075 scopus 로고    scopus 로고
    • Metabolic profile biomarkers of metal contamination in a sentinel terrestrial species are applicable across multiple sites
    • Bundy JG, Keun HC, Sidhu JK, Spurgeon DJ, Svendsen C, Kille P, et al. 2007. Metabolic profile biomarkers of metal contamination in a sentinel terrestrial species are applicable across multiple sites. Environ Sci Technol 41(12):4458-4464.
    • (2007) Environ Sci Technol , vol.41 , Issue.12 , pp. 4458-4464
    • Bundy, J.G.1    Keun, H.C.2    Sidhu, J.K.3    Spurgeon, D.J.4    Svendsen, C.5    Kille, P.6
  • 9
    • 26844512816 scopus 로고    scopus 로고
    • Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis
    • Bustin SA, Mueller R. 2005. Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis. Clin Sci (Lond) 109(4):365-379.
    • (2005) Clin Sci (Lond) , vol.109 , Issue.4 , pp. 365-379
    • Bustin, S.A.1    Mueller, R.2
  • 10
    • 33644777676 scopus 로고    scopus 로고
    • Meeting report: Validation of toxicogenomics-based test systems: ECVAM-ICCVAM/NICEATM considerations for regulatory use
    • Corvi R, Ahr HJ, Albertini S, Blakey DH, Clerici L, Coecke S, et al. 2006. Meeting report: validation of toxicogenomics-based test systems: ECVAM-ICCVAM/NICEATM considerations for regulatory use. Environ Health Perspect 114:420-429.
    • (2006) Environ Health Perspect , vol.114 , pp. 420-429
    • Corvi, R.1    Ahr, H.J.2    Albertini, S.3    Blakey, D.H.4    Clerici, L.5    Coecke, S.6
  • 11
    • 77149141493 scopus 로고    scopus 로고
    • Dearfield KL, Benson WH, Gallagher K, Johnson J. 2008. Activities to address genomics needs at the U.S. Environmental Protection Agency. In: Genomics and Environmental Regulation: Science, Ethics and Law (Sharp R, Marchant G, Grodsky J, eds). Baltimore, MD:Johns Hopkins University Press, 25-34.
    • Dearfield KL, Benson WH, Gallagher K, Johnson J. 2008. Activities to address genomics needs at the U.S. Environmental Protection Agency. In: Genomics and Environmental Regulation: Science, Ethics and Law (Sharp R, Marchant G, Grodsky J, eds). Baltimore, MD:Johns Hopkins University Press, 25-34.
  • 13
    • 54049152301 scopus 로고    scopus 로고
    • Hepatic transcriptomic profiles of European flounder (Platichthys flesus) from field sites and computational approaches to predict site from stress gene responses following exposure to model toxicants
    • Falciani F, Diab AM, Sabine V, Williams TD, Ortega F, George SG, et al. 2008. Hepatic transcriptomic profiles of European flounder (Platichthys flesus) from field sites and computational approaches to predict site from stress gene responses following exposure to model toxicants. Aquat Toxicol 90(2):92-101.
    • (2008) Aquat Toxicol , vol.90 , Issue.2 , pp. 92-101
    • Falciani, F.1    Diab, A.M.2    Sabine, V.3    Williams, T.D.4    Ortega, F.5    George, S.G.6
  • 14
    • 36849031280 scopus 로고    scopus 로고
    • Gene expression profiling for understanding chemical causation of biological effects for complex mixtures: A case study on estrogens
    • Filby AL, Santos EM, Thorpe KL, Maack G, Tyler CR. 2007. Gene expression profiling for understanding chemical causation of biological effects for complex mixtures: a case study on estrogens. Environ Sci Technol 41(23):8187-8194.
    • (2007) Environ Sci Technol , vol.41 , Issue.23 , pp. 8187-8194
    • Filby, A.L.1    Santos, E.M.2    Thorpe, K.L.3    Maack, G.4    Tyler, C.R.5
  • 15
    • 29744451505 scopus 로고    scopus 로고
    • The use and misuse of biomarkers in ecotoxicology
    • Forbes VE, Palmqvist A, Bach L. 2006. The use and misuse of biomarkers in ecotoxicology. Environ Toxicol Chem 25(1):272-280.
    • (2006) Environ Toxicol Chem , vol.25 , Issue.1 , pp. 272-280
    • Forbes, V.E.1    Palmqvist, A.2    Bach, L.3
  • 16
    • 44749087321 scopus 로고    scopus 로고
    • Gene expression profiles of fathead minnows exposed to surface waters above and below a sewage treatment plant in Minnesota
    • Garcia-Reyero N, Adelman I, Liu L, Denslow N. 2008a. Gene expression profiles of fathead minnows exposed to surface waters above and below a sewage treatment plant in Minnesota. Mar Environ Res 66(1):134-136.
    • (2008) Mar Environ Res , vol.66 , Issue.1 , pp. 134-136
    • Garcia-Reyero, N.1    Adelman, I.2    Liu, L.3    Denslow, N.4
  • 17
    • 44949100202 scopus 로고    scopus 로고
    • Construction of a robust microarray from a non-model species largemouth bass, Micropterus salmoides, using pyrosequencing technology
    • Garcia-Reyero N, Griffitt RJ, Liu L, Kroll KJ, Farmerie WG, Barber DS, et al. 2008b. Construction of a robust microarray from a non-model species largemouth bass, Micropterus salmoides, using pyrosequencing technology. J Fish Biol 72(9):2354-2376.
    • (2008) J Fish Biol , vol.72 , Issue.9 , pp. 2354-2376
    • Garcia-Reyero, N.1    Griffitt, R.J.2    Liu, L.3    Kroll, K.J.4    Farmerie, W.G.5    Barber, D.S.6
  • 18
    • 33751193656 scopus 로고    scopus 로고
    • Glas AM, Floore A, Delahaye LJ, Witteveen AT, Pover RC, Bakx N, et al. 2006. Converting a breast cancer microarray signature into a high-throughput diagnostic test. BMC Genomics 7:278; doi:10.1186/1471-2164-7-278 [Online 30 October 2006].
    • Glas AM, Floore A, Delahaye LJ, Witteveen AT, Pover RC, Bakx N, et al. 2006. Converting a breast cancer microarray signature into a high-throughput diagnostic test. BMC Genomics 7:278; doi:10.1186/1471-2164-7-278 [Online 30 October 2006].
  • 20
    • 70350468112 scopus 로고    scopus 로고
    • Haymes KM, Hester SD, Benson WH, McClintock JT. 2009. Potential use of microarray technology at the U.S. Environmental Protection Agency. In: Genomics: Fundamentals and Applications (Choudhuri S, Carlson DB, eds). New York: Informa Healthcare USA, 379-396.
    • Haymes KM, Hester SD, Benson WH, McClintock JT. 2009. Potential use of microarray technology at the U.S. Environmental Protection Agency. In: Genomics: Fundamentals and Applications (Choudhuri S, Carlson DB, eds). New York: Informa Healthcare USA, 379-396.
  • 22
    • 64049119418 scopus 로고    scopus 로고
    • Profiling chemicals based on chronic toxicity results from the U.S. EPA ToxRef Database
    • Martin MT, Judson RS, Reif DM, Kavlock RJ, Dix DJ. 2009. Profiling chemicals based on chronic toxicity results from the U.S. EPA ToxRef Database. Environ Health Perspect 117:392-399.
    • (2009) Environ Health Perspect , vol.117 , pp. 392-399
    • Martin, M.T.1    Judson, R.S.2    Reif, D.M.3    Kavlock, R.J.4    Dix, D.J.5
  • 23
    • 84934435468 scopus 로고    scopus 로고
    • Public consortium efforts in toxicogenomics
    • Mattes WB. 2008. Public consortium efforts in toxicogenomics. Methods Mol Biol 460:221-238.
    • (2008) Methods Mol Biol , vol.460 , pp. 221-238
    • Mattes, W.B.1
  • 24
    • 34047098017 scopus 로고    scopus 로고
    • Linkage of biochemical responses to population-level effects: A case study with vitellogenin in the fathead minnow (Pimephales promelas)
    • Miller DH, Jensen KM, Villeneuve DL, Kahl MD, Makynen EA, Durhan EJ, et al. 2007. Linkage of biochemical responses to population-level effects: a case study with vitellogenin in the fathead minnow (Pimephales promelas). Environ Toxicol Chem 26(3):521-527.
    • (2007) Environ Toxicol Chem , vol.26 , Issue.3 , pp. 521-527
    • Miller, D.H.1    Jensen, K.M.2    Villeneuve, D.L.3    Kahl, M.D.4    Makynen, E.A.5    Durhan, E.J.6
  • 25
    • 44949223368 scopus 로고    scopus 로고
    • Teleost microarrays: Development in a broad phylogenetic range reflecting diverse applications
    • Miller KM, Maclean N. 2008. Teleost microarrays: development in a broad phylogenetic range reflecting diverse applications. J Fish Biol 72(9):2039-2050.
    • (2008) J Fish Biol , vol.72 , Issue.9 , pp. 2039-2050
    • Miller, K.M.1    Maclean, N.2
  • 26
    • 33751001777 scopus 로고    scopus 로고
    • Nielsen KL, Hogh AL, Emmersen J. 2006. DeepSAGE-digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples. Nucleic Acids Res 34(19):e133; doi:10.1093/nar/gkl714 [Online 5 October 2006].
    • Nielsen KL, Hogh AL, Emmersen J. 2006. DeepSAGE-digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples. Nucleic Acids Res 34(19):e133; doi:10.1093/nar/gkl714 [Online 5 October 2006].
  • 28
    • 34548490763 scopus 로고    scopus 로고
    • Parsons HM, Ludwig C, Gunther UL, Viant MR. 2007. Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation. BMC Bioinformatics 8:234; doi:10.1186/1471-2105-8-234 [Online 2 July 2007].
    • Parsons HM, Ludwig C, Gunther UL, Viant MR. 2007. Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation. BMC Bioinformatics 8:234; doi:10.1186/1471-2105-8-234 [Online 2 July 2007].
  • 29
    • 34250621882 scopus 로고    scopus 로고
    • Roling JA, Bain LJ, Gardea-Torresdey J, Key PB, Baldwin WS. 2007. Using mummichog (Fundulus heteroclitus) arrays to monitor the effectiveness of remediation at a Superfund site in Charleston, South Carolina, U.S.A. Environ Toxicol Chem 26(6):1205-1213.
    • Roling JA, Bain LJ, Gardea-Torresdey J, Key PB, Baldwin WS. 2007. Using mummichog (Fundulus heteroclitus) arrays to monitor the effectiveness of remediation at a Superfund site in Charleston, South Carolina, U.S.A. Environ Toxicol Chem 26(6):1205-1213.
  • 30
    • 33748491517 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    • Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, et al. 2006. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotechnol 24(9):1151-1161.
    • (2006) Nat Biotechnol , vol.24 , Issue.9 , pp. 1151-1161
    • Shi, L.1    Reid, L.H.2    Jones, W.D.3    Shippy, R.4    Warrington, J.A.5    Baker, S.C.6
  • 32
    • 77149133495 scopus 로고    scopus 로고
    • U.S. EPA. 2004. Potential Implications of Genomics for Regulatory and Risk Assessment Applications at EPA. EPA 100/B-04/002. Washington, DC:U.S. Environmental Protection Agency. Available: http://www.epa.gov/osa/pdfs/EPA- Genomics-White-Paper.pdf [accessed 16 November 2009].
    • U.S. EPA. 2004. Potential Implications of Genomics for Regulatory and Risk Assessment Applications at EPA. EPA 100/B-04/002. Washington, DC:U.S. Environmental Protection Agency. Available: http://www.epa.gov/osa/pdfs/EPA- Genomics-White-Paper.pdf [accessed 16 November 2009].
  • 34
    • 38549162759 scopus 로고    scopus 로고
    • CEBS-Chemical Effects in Biological Systems: A public data repository integrating study design and toxicity data with microarray and proteomics data
    • Waters M, Stasiewicz S, Merrick BA, Tomer K, Bushel P, Paules R, et al. 2008. CEBS-Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data. Nucleic Acids Res 36:D892-900.
    • (2008) Nucleic Acids Res , vol.36
    • Waters, M.1    Stasiewicz, S.2    Merrick, B.A.3    Tomer, K.4    Bushel, P.5    Paules, R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.