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Volumn 72, Issue 9, 2008, Pages 2187-2206

Development of a 37 k high-density oligonucleotide microarray: A new tool for functional genome research in rainbow trout

Author keywords

Microarray; Muscle atrophy; Rainbow trout

Indexed keywords

ONCORHYNCHUS MYKISS; SALMONIDAE;

EID: 44949213758     PISSN: 00221112     EISSN: 10958649     Source Type: Journal    
DOI: 10.1111/j.1095-8649.2008.01860.x     Document Type: Article
Times cited : (35)

References (49)
  • 1
    • 0030791113 scopus 로고    scopus 로고
    • Involvement of p53 in cell differentiation and development
    • Almog, N. Rotter, V 1997). Involvement of p53 in cell differentiation and development. Biochimica et Biophysica Acta 1333, 1 27.
    • (1997) Biochimica et Biophysica Acta , vol.1333 , pp. 1-27
    • Almog, N.1    Rotter, V.2
  • 2
    • 0004202155 scopus 로고
    • AOAC (. Washington, D.C. Association of Official Analytical Chemists.
    • AOAC (1990). "Official Methods of Analysis", 5th edn. Washington, D.C Association of Official Analytical Chemists.
    • (1990) "official Methods of Analysis", 5th Edn.
  • 3
    • 26244454983 scopus 로고    scopus 로고
    • Gene expression profiles of intact and regenerating zebrafish retina
    • Cameron, D. A., Gentile, K. L., Middleton, F. A. Yurco, P 2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular vision 11, 775 791.
    • (2005) Molecular Vision , vol.11 , pp. 775-791
    • Cameron, D.A.1    Gentile, K.L.2    Middleton, F.A.3    Yurco, P.4
  • 7
    • 33748697895 scopus 로고    scopus 로고
    • Generation of a large scale repertoire of expressed sequence tags (ESTs) from normalised rainbow trout cDNA libraries
    • Govoroun, M., Le Gac, F. Guiguen, Y 2006). Generation of a large scale repertoire of expressed sequence tags (ESTs) from normalised rainbow trout cDNA libraries. BMC Genomics 7, 196.
    • (2006) BMC Genomics , vol.7 , pp. 196
    • Govoroun, M.1    Le Gac, F.2    Guiguen, Y.3
  • 9
    • 34347258525 scopus 로고    scopus 로고
    • Sensitive and robust gene expression changes in fish exposed to estrogen - A microarray approach
    • Gunnarsson, L., Kristiansson, E., Forlin, L., Nerman, O. Larsson, D. G 2007). Sensitive and robust gene expression changes in fish exposed to estrogen - a microarray approach. BMC Genomics 8, 149.
    • (2007) BMC Genomics , vol.8149
    • Gunnarsson, L.1    Kristiansson, E.2    Forlin, L.3    Nerman, O.4    Larsson, D.G.5
  • 10
    • 33845710168 scopus 로고    scopus 로고
    • A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms
    • Guyomard, R., Mauger, S., Tabet-Canale, K., Martineau, S., Genet, C., Krieg, F. Quillet, E 2006). A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms. BMC Genomics 7, 302.
    • (2006) BMC Genomics , vol.7302
    • Guyomard, R.1    Mauger, S.2    Tabet-Canale, K.3    Martineau, S.4    Genet, C.5    Krieg, F.6    Quillet, E.7
  • 13
    • 0036384940 scopus 로고    scopus 로고
    • Differential gene expression in the brain of channel catfish (Ictalurus punctatus) in response to cold acclimation
    • Ju, Z., Dunham, R. A. Liu, Z 2002). Differential gene expression in the brain of channel catfish (Ictalurus punctatus) in response to cold acclimation. Molecular Genetics and Genomics 268, 87 95.
    • (2002) Molecular Genetics and Genomics , vol.268 , pp. 87-95
    • Ju, Z.1    Dunham, R.A.2    Liu, Z.3
  • 17
    • 14744280589 scopus 로고    scopus 로고
    • Expression profiling of immune-related genes from Japanese flounder Paralichthys olivaceus kidney cells using cDNA microarrays
    • Kurobe, T., Yasuike, M., Kimura, T., Hirono, I. Aoki, T 2005). Expression profiling of immune-related genes from Japanese flounder Paralichthys olivaceus kidney cells using cDNA microarrays. Developmental and Comparative Immunology 29, 515 523.
    • (2005) Developmental and Comparative Immunology , vol.29 , pp. 515-523
    • Kurobe, T.1    Yasuike, M.2    Kimura, T.3    Hirono, I.4    Aoki, T.5
  • 18
    • 33746098129 scopus 로고    scopus 로고
    • Production and utilization of a high-density oligonucleotide microarray in channel catfish, Ictalurus punctatus
    • Li, R. W. Waldbieser, G. C 2006). Production and utilization of a high-density oligonucleotide microarray in channel catfish, Ictalurus punctatus. BMC Genomics 7, 134.
    • (2006) BMC Genomics , vol.7134
    • Li, R.W.1    Waldbieser, G.C.2
  • 20
    • 34447539555 scopus 로고    scopus 로고
    • Directional responses following recombinant cytokine stimulation of rainbow trout (Oncorhynchus mykiss) RTS-11 macrophage cells as revealed by transcriptome profiling
    • Martin, S. A., Zou, J., Houlihan, D. F. Secombes, C. J 2007). Directional responses following recombinant cytokine stimulation of rainbow trout (Oncorhynchus mykiss) RTS-11 macrophage cells as revealed by transcriptome profiling. BMC Genomics 8, 150.
    • (2007) BMC Genomics , vol.8150
    • Martin, S.A.1    Zou, J.2    Houlihan, D.F.3    Secombes, C.J.4
  • 22
    • 0029124186 scopus 로고
    • Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones
    • Nguyen, C., Rocha, D., Granjeaud, S., Baldit, M., Bernard, K., Naquet, P. Jordan, B. R 1995). Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones. Genomics 29, 207 216.
    • (1995) Genomics , vol.29 , pp. 207-216
    • Nguyen, C.1    Rocha, D.2    Granjeaud, S.3    Baldit, M.4    Bernard, K.5    Naquet, P.6    Jordan, B.R.7
  • 27
    • 0033965855 scopus 로고    scopus 로고
    • The TIGR gene indices: Reconstruction and representation of expressed gene sequences
    • Quackenbush, J., Liang, F., Holt, I., Pertea, G. Upton, J 2000). The TIGR gene indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Research 28, 141 145.
    • (2000) Nucleic Acids Research , vol.28 , pp. 141-145
    • Quackenbush, J.1    Liang, F.2    Holt, I.3    Pertea, G.4    Upton, J.5
  • 30
    • 0035034318 scopus 로고    scopus 로고
    • Composite interval mapping reveals a major locus influencing embryonic development rate in rainbow trout (Oncorhynchus mykiss)
    • Robison, B. D., Wheeler, P. A., Sundin, K., Sikka, P. Thorgaard, G. H 2001). Composite interval mapping reveals a major locus influencing embryonic development rate in rainbow trout (Oncorhynchus mykiss). The Journal of Heredity 92, 16 22.
    • (2001) The Journal of Heredity , vol.92 , pp. 16-22
    • Robison, B.D.1    Wheeler, P.A.2    Sundin, K.3    Sikka, P.4    Thorgaard, G.H.5
  • 33
    • 11144273211 scopus 로고    scopus 로고
    • Identification and molecular characterization of the rainbow trout calpains (Capn1 and Capn2): Their expression in muscle wasting during starvation
    • Salem, M., Nath, J., Rexroad, C. E., Killefer, J. Yao, J 2005a). Identification and molecular characterization of the rainbow trout calpains (Capn1 and Capn2): their expression in muscle wasting during starvation. Comparative Biochemistry and Physiology B 140, 63 71.
    • (2005) Comparative Biochemistry and Physiology B , vol.140 , pp. 63-71
    • Salem, M.1    Nath, J.2    Rexroad, C.E.3    Killefer, J.4    Yao, J.5
  • 35
    • 34247898825 scopus 로고    scopus 로고
    • Microarray gene expression analysis in atrophying rainbow trout muscle: A unique non-mammalian muscle degradation model
    • Salem, M., Kenney, B., Rexroad, C. E. Yao, J 2006a). Microarray gene expression analysis in atrophying rainbow trout muscle: a unique non-mammalian muscle degradation model. Physiological Genomics 28, 33 45.
    • (2006) Physiological Genomics , vol.28 , pp. 33-45
    • Salem, M.1    Kenney, B.2    Rexroad, C.E.3    Yao, J.4
  • 36
    • 33646364780 scopus 로고    scopus 로고
    • Molecular characterization of muscle atrophy and proteolysis associated with spawning in rainbow trout
    • Salem, M., Kenney, P. B., Rexroad, E. Yao, J 2006b). Molecular characterization of muscle atrophy and proteolysis associated with spawning in rainbow trout. Comparative Biochemistry and Physiology D 1, 227 237.
    • (2006) Comparative Biochemistry and Physiology D , vol.1 , pp. 227-237
    • Salem, M.1    Kenney, P.B.2    Rexroad, E.3    Yao, J.4
  • 37
    • 33646715843 scopus 로고    scopus 로고
    • Anabolic effects of feeding beta(2)-adrenergic agonists on rainbow trout muscle proteases and proteins
    • Salem, M., Levesque, H., Moon, T. W., Rexroad, C. E. Yao, J 2006c). Anabolic effects of feeding beta(2)-adrenergic agonists on rainbow trout muscle proteases and proteins. Comparative Biochemistry and Physiology A 144, 145 154.
    • (2006) Comparative Biochemistry and Physiology a , vol.144 , pp. 145-154
    • Salem, M.1    Levesque, H.2    Moon, T.W.3    Rexroad, C.E.4    Yao, J.5
  • 38
    • 35448999693 scopus 로고    scopus 로고
    • Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss)
    • Salem, M., Silverstein, J., Rexroad, C. E., III. Yao, J 2007). Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss). BMC Genomics 8, 328.
    • (2007) BMC Genomics , vol.8328
    • Salem, M.1    Silverstein, J.2    Rexroad, C.E.3    Iii4    Yao, J.5
  • 39
    • 14044272144 scopus 로고    scopus 로고
    • A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary
    • von Schalburg, K. R., Rise, M. L., Brown, G. D., Davidson, W. S. Koop, B. F 2005a). A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary. Biology of Reproduction 72, 687 699.
    • (2005) Biology of Reproduction , vol.72 , pp. 687-699
    • Von Schalburg, K.R.1    Rise, M.L.2    Brown, G.D.3    Davidson, W.S.4    Koop, B.F.5
  • 41
    • 0001523665 scopus 로고    scopus 로고
    • Structural and functional genomics in domestic animals: The way to understand the phenotype
    • Schwerin, M 2001). Structural and functional genomics in domestic animals: the way to understand the phenotype. Journal of Applied Genetics 42, 293 308.
    • (2001) Journal of Applied Genetics , vol.42 , pp. 293-308
    • Schwerin, M.1
  • 42
    • 34547543619 scopus 로고    scopus 로고
    • Intense physical activity enhances neutrophil antioxidant enzyme gene expression. Immunocytochemistry evidence for catalase secretion
    • Sureda, A., Ferrer, M. D., Tauler, P., Maestre, I., Aguilo, A., Cordova, A., Tur, J. A., Roche, E. Pons, A 2007). Intense physical activity enhances neutrophil antioxidant enzyme gene expression. Immunocytochemistry evidence for catalase secretion. Free Radical Research 41, 874 883.
    • (2007) Free Radical Research , vol.41 , pp. 874-883
    • Sureda, A.1    Ferrer, M.D.2    Tauler, P.3    Maestre, I.4    Aguilo, A.5    Cordova, A.6    Tur, J.A.7    Roche, E.8    Pons, A.9
  • 44
    • 28044467784 scopus 로고    scopus 로고
    • Use of a rainbow trout oligonucleotide microarray to determine transcriptional patterns in aflatoxin B1-induced hepatocellular carcinoma compared to adjacent liver
    • Tilton, S. C., Gerwick, L. G., Hendricks, J. D., Rosato, C. S., Corley-Smith, G., Givan, S. A., Bailey, G. S., Bayne, C. J. Williams, D. E 2005). Use of a rainbow trout oligonucleotide microarray to determine transcriptional patterns in aflatoxin B1-induced hepatocellular carcinoma compared to adjacent liver. Toxicological Sciences 88, 319 330.
    • (2005) Toxicological Sciences , vol.88 , pp. 319-330
    • Tilton, S.C.1    Gerwick, L.G.2    Hendricks, J.D.3    Rosato, C.S.4    Corley-Smith, G.5    Givan, S.A.6    Bailey, G.S.7    Bayne, C.J.8    Williams, D.E.9
  • 45
    • 22144490466 scopus 로고    scopus 로고
    • Development and application of a brain-specific cDNA microarray for effect evaluation of neuro-active pharmaceuticals in zebrafish (Danio rerio)
    • van der Ven, K., De Wit, M., Keil, D., Moens, L., Van Leemput, K., Naudts, B. De Coen, W 2005). Development and application of a brain-specific cDNA microarray for effect evaluation of neuro-active pharmaceuticals in zebrafish (Danio rerio). Comparative Biochemistry and Physiology B 141, 408 417.
    • (2005) Comparative Biochemistry and Physiology B , vol.141 , pp. 408-417
    • Van Der Ven, K.1    De Wit, M.2    Keil, D.3    Moens, L.4    Van Leemput, K.5    Naudts, B.6    De Coen, W.7
  • 46
    • 0035192998 scopus 로고    scopus 로고
    • Micro arrays and biochips: Applications and potential in genomics and proteomics
    • Vo-Dinh, T. Askari, M 2001). Micro arrays and biochips: applications and potential in genomics and proteomics. Current Genomics 2, 399 415.
    • (2001) Current Genomics , vol.2 , pp. 399-415
    • Vo-Dinh, T.1    Askari, M.2
  • 47
    • 0032580334 scopus 로고    scopus 로고
    • Potential role for cathepsin D in p53-dependent tumor suppression and chemosensitivity
    • Wu, G. S., Saftig, P., Peters, C. El-Deiry, W. S 1998). Potential role for cathepsin D in p53-dependent tumor suppression and chemosensitivity. Oncogene 16, 2177 2183.
    • (1998) Oncogene , vol.16 , pp. 2177-2183
    • Wu, G.S.1    Saftig, P.2    Peters, C.3    El-Deiry, W.S.4
  • 48
    • 1942520427 scopus 로고    scopus 로고
    • Identification of ALDH4 as a p53-inducible gene and its protective role in cellular stresses
    • Yoon, K. A., Nakamura, Y. Arakawa, H 2004). Identification of ALDH4 as a p53-inducible gene and its protective role in cellular stresses. Journal of Human Genetics 49, 134 140.
    • (2004) Journal of Human Genetics , vol.49 , pp. 134-140
    • Yoon, K.A.1    Nakamura, Y.2    Arakawa, H.3
  • 49
    • 2342571732 scopus 로고    scopus 로고
    • A single major chromosomal region controls natural killer cell-like activity in rainbow trout
    • Zimmerman, A. M., Evenhuis, J. P., Thorgaard, G. H. Ristow, S. S 2004). A single major chromosomal region controls natural killer cell-like activity in rainbow trout. Immunogenetics 55, 825 835.
    • (2004) Immunogenetics , vol.55 , pp. 825-835
    • Zimmerman, A.M.1    Evenhuis, J.P.2    Thorgaard, G.H.3    Ristow, S.S.4


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