메뉴 건너뛰기




Volumn 28, Issue 8, 2009, Pages 1711-1721

Gene expression profiling in atlantic cod (Gadus morhua L.) from two contaminated sites using a custom-made cDNA microarray

Author keywords

Atlantic cod; Environmental monitoring; Heavy metals; Microarray

Indexed keywords

ATLANTIC COD; CDNA MICROARRAYS; CONTAMINATED SITES; CYTOCHROME P4501A; ENVIRONMENTAL CONTAMINANT; ENVIRONMENTAL MONITORING; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILES; GENE EXPRESSION PROFILING; HEME OXYGENASES; METAL-INDUCED STRESS; METALLOTHIONEINS; NATURAL POPULATION; PEARSON CORRELATION; POLLUTED SITES; REFERENCE SITES; TRANSCRIPTIONAL LEVELS;

EID: 68149140181     PISSN: 07307268     EISSN: None     Source Type: Journal    
DOI: 10.1897/08-517.1     Document Type: Article
Times cited : (31)

References (40)
  • 2
    • 33846813734 scopus 로고    scopus 로고
    • DNA microarray technology in toxicogenomics of aquatic models: Methods and applications
    • Ju Z, Wells MC, Walter RB. 2007. DNA microarray technology in toxicogenomics of aquatic models: Methods and applications. Comp Biochem Physiol C Toxicol Pharmacol 145:5-14.
    • (2007) Comp Biochem Physiol C Toxicol Pharmacol , vol.145 , pp. 5-14
    • Ju, Z.1    Wells, M.C.2    Walter, R.B.3
  • 3
    • 0037290663 scopus 로고    scopus 로고
    • Fish bioaccumulation and biomarkers in environmental risk assessment: A review
    • van der Oost R, Beyer J, Vermeulen NPE. 2003. Fish bioaccumulation and biomarkers in environmental risk assessment: A review. Environ Toxicol Pharmacol 13:57-149.
    • (2003) Environ Toxicol Pharmacol , vol.13 , pp. 57-149
    • Van Der Oost, R.1    Beyer, J.2    Vermeulen, N.P.E.3
  • 5
    • 31144465330 scopus 로고    scopus 로고
    • PCB-containing paint and plaster caused extreme PCB concentrations in biota from the Sorfjord (western Norway) - A case study
    • Ruus A, Green NW, Maage A, Skei J. 2006. PCB-containing paint and plaster caused extreme PCB concentrations in biota from the Sorfjord (western Norway) - A case study. Mar Pollut Bull 52: 100-103.
    • (2006) Mar Pollut Bull , vol.52 , pp. 100-103
    • Ruus, A.1    Green, N.W.2    Maage, A.3    Skei, J.4
  • 10
    • 0029461958 scopus 로고
    • Modification of the Tri-Reagent™ procedure for isolation of RNA from polysaccharide-rich and proteoglycan-rich sources
    • Chomczynski P, Mackey K. 1995. Modification of the Tri-Reagent™ procedure for isolation of RNA from polysaccharide-rich and proteoglycan-rich sources. Biotechniques 19:942-945.
    • (1995) Biotechniques , vol.19 , pp. 942-945
    • Chomczynski, P.1    Mackey, K.2
  • 11
    • 0031978181 scopus 로고    scopus 로고
    • Base calling of automated sequencer traces using Phred. II. Error probabilities
    • Ewing B, Green P. 1998. Base calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 13
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang XQ, Madan A. 1999. CAP3: A DNA sequence assembly program. Genome Res 9:868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.Q.1    Madan, A.2
  • 15
    • 34548501415 scopus 로고    scopus 로고
    • Visualization and assessment of PCR products
    • Bowtell D, Sambrook J, eds, Cold Spring Harbor Laboratory, New York, NY, USA
    • Holloway A, Murphy M, Chandrasekharappa S, Monte D. 2003. Visualization and assessment of PCR products. In Bowtell D, Sambrook J, eds, A Molecular Cloning Manual, DNA Microarrays. Cold Spring Harbor Laboratory, New York, NY, USA, pp 23-25.
    • (2003) A Molecular Cloning Manual, DNA Microarrays , pp. 23-25
    • Holloway, A.1    Murphy, M.2    Chandrasekharappa, S.3    Monte, D.4
  • 16
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP. 2002. Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30:e15.
    • (2002) Nucleic Acids Res , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 17
    • 4344571581 scopus 로고    scopus 로고
    • Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
    • Breitling R, Armengaud P, Amtmann A, Herzyk P. 2004. Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett 573:83-92.
    • (2004) FEBS Lett , vol.573 , pp. 83-92
    • Breitling, R.1    Armengaud, P.2    Amtmann, A.3    Herzyk, P.4
  • 18
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research 0034.1-003411
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. 2002. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: research 0034.1-003411.
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 19
    • 0030439094 scopus 로고    scopus 로고
    • Contaminant accumulation and biomarker responses in flounder (Platichthys flesus L.) and Atlantic cod (Gadus morhua L.) exposed by caging to polluted sediments in Sørfjorden, Norway
    • Beyer J, Sandvik M, Hylland K, Fjeld E, Egaas E, Aas E, Skåre JU, Goksøyr A. 1996. Contaminant accumulation and biomarker responses in flounder (Platichthys flesus L.) and Atlantic cod (Gadus morhua L.) exposed by caging to polluted sediments in Sørfjorden, Norway. Aquat Toxicol 36:75-98.
    • (1996) Aquat Toxicol , vol.36 , pp. 75-98
    • Beyer, J.1    Sandvik, M.2    Hylland, K.3    Fjeld, E.4    Egaas, E.5    Aas, E.6    Skåre, J.U.7    Goksøyr, A.8
  • 21
    • 0037093202 scopus 로고    scopus 로고
    • Regulation of ferritin genes and protein
    • Torti FM, Torti SV. 2002. Regulation of ferritin genes and protein. Blood 99:3505-3516.
    • (2002) Blood , vol.99 , pp. 3505-3516
    • Torti, F.M.1    Torti, S.V.2
  • 22
    • 0035983247 scopus 로고    scopus 로고
    • Heme oxygenase-1. the "emerging molecule" has arrived
    • Morse D, Choi AMK. 2002. Heme oxygenase-1. The "emerging molecule" has arrived. Am J Respir Cell Mol Biol 27:8-16.
    • (2002) Am J Respir Cell Mol Biol , vol.27 , pp. 8-16
    • Morse, D.1    Choi, A.M.K.2
  • 23
    • 0023624147 scopus 로고
    • Metal induction of heme oxygenase
    • Sunderman FW. 1987. Metal induction of heme oxygenase. Ann N Y Acad Sci 514:65-80.
    • (1987) Ann N Y Acad Sci , vol.514 , pp. 65-80
    • Sunderman, F.W.1
  • 24
    • 17544400545 scopus 로고    scopus 로고
    • Induction of heme oxygenase in fish by heavy metals, Phenylhydrazine and high lipid diets
    • Jørgensen M, Grøsvik BE, Hamre K, Goksøyr A. 1998. Induction of heme oxygenase in fish by heavy metals, Phenylhydrazine and high lipid diets. Mar Environ Res 46:559-561.
    • (1998) Mar Environ Res , vol.46 , pp. 559-561
    • Jørgensen, M.1    Grøsvik, B.E.2    Hamre, K.3    Goksøyr, A.4
  • 26
    • 0028798434 scopus 로고
    • Oxidative mechanisms in the toxicity of metal ions
    • Stohs SJ, Bagchi D. 1995. Oxidative mechanisms in the toxicity of metal ions. Free Radic Biol Med 18:321-336.
    • (1995) Free Radic Biol Med , vol.18 , pp. 321-336
    • Stohs, S.J.1    Bagchi, D.2
  • 29
    • 0042433120 scopus 로고    scopus 로고
    • A DNA expression array to detect toxic stress response in European flounder (Plalichthys flesus)
    • Williams TD, Gensberg K, Minchin SD, Chipman JK. 2003. A DNA expression array to detect toxic stress response in European flounder (Plalichthys flesus). Aquat Toxicol 65:141-157.
    • (2003) Aquat Toxicol , vol.65 , pp. 141-157
    • Williams, T.D.1    Gensberg, K.2    Minchin, S.D.3    Chipman, J.K.4
  • 30
    • 1842735382 scopus 로고    scopus 로고
    • Effects of alkylphenols on CYP1A and CYP3A expression in first spawning Atlantic cod (Gadus morhua)
    • Hasselberg L, Meier S, Svardal A, Hegelund T, Celander MC. 2004. Effects of alkylphenols on CYP1A and CYP3A expression in first spawning Atlantic cod (Gadus morhua). Aquat Toxicol 67:303-313.
    • (2004) Aquat Toxicol , vol.67 , pp. 303-313
    • Hasselberg, L.1    Meier, S.2    Svardal, A.3    Hegelund, T.4    Celander, M.C.5
  • 33
    • 0037449919 scopus 로고    scopus 로고
    • Molecular cloning, expression, and functional characterization of a novel zebrafish cytosolic sulfotransferase
    • Sugahara T, Liu C-C, Govind Pai T, Liu M-C. 2003. Molecular cloning, expression, and functional characterization of a novel zebrafish cytosolic sulfotransferase. Biochem Biophys Res Commun 300:725-730.
    • (2003) Biochem Biophys Res Commun , vol.300 , pp. 725-730
    • Sugahara, T.1    Liu, C.-C.2    Govind Pai, T.3    Liu, M.-C.4
  • 34
    • 0242552238 scopus 로고    scopus 로고
    • Sulfonation of dehydroepiandrosterone and neurosteroids: Molecular cloning, expression, and functional characterization of a novel zebrafish SULT2 cytosolic sulfotransferase
    • Sugahara T, Yang Y-S, Liu C-C, Pai TG, Liu M-C. 2003. Sulfonation of dehydroepiandrosterone and neurosteroids: Molecular cloning, expression, and functional characterization of a novel zebrafish SULT2 cytosolic sulfotransferase. Biochem J 375:785-791.
    • (2003) Biochem J , vol.375 , pp. 785-791
    • Sugahara, T.1    Yang, Y.-S.2    Liu, C.-C.3    Pai, T.G.4    Liu, M.-C.5
  • 35
    • 2942582641 scopus 로고    scopus 로고
    • Induction of phenol-type sulfotransferase and glucuronosyltransferase in channel catfish and mummichog
    • Gaworecki KM, Rice CD, van den Hurk P. 2004. Induction of phenol-type sulfotransferase and glucuronosyltransferase in channel catfish and mummichog. Mar Environ Res 58:525-528.
    • (2004) Mar Environ Res , vol.58 , pp. 525-528
    • Gaworecki, K.M.1    Rice, C.D.2    Van Den Hurk, P.3
  • 36
    • 0031868851 scopus 로고    scopus 로고
    • Differential regulation of individual sulfotransferase isoforms by phenobarbital in male rat liver
    • Runge-Morris M, Rose K, Falany CN, Kocarek TA. 1998. Differential regulation of individual sulfotransferase isoforms by phenobarbital in male rat liver. Drug Metab Dispos 26:795-801.
    • (1998) Drug Metab Dispos , vol.26 , pp. 795-801
    • Runge-Morris, M.1    Rose, K.2    Falany, C.N.3    Kocarek, T.A.4
  • 38
    • 0036846841 scopus 로고    scopus 로고
    • New insights into long-chain fatty acid uptake by heart muscle: A crucial role for fatty acid translocase/CD36
    • Brinkmann JFF, Abumrad NA, Ibrahimi A, van der Vusse GJ, Glatz JFC. 2002. New insights into long-chain fatty acid uptake by heart muscle: A crucial role for fatty acid translocase/CD36. Biochem J 367:561-570.
    • (2002) Biochem J , vol.367 , pp. 561-570
    • Brinkmann, J.F.F.1    Abumrad, N.A.2    Ibrahimi, A.3    Van Der Vusse, G.J.4    Glatz, J.F.C.5
  • 39
    • 33750629812 scopus 로고    scopus 로고
    • Glutathione peroxidases and redox-regulated transcription factors
    • Brigelius-Flohe R. 2006. Glutathione peroxidases and redox-regulated transcription factors. Biol Chem 387:1329-1335.
    • (2006) Biol Chem , vol.387 , pp. 1329-1335
    • Brigelius-Flohe, R.1
  • 40
    • 0033798588 scopus 로고    scopus 로고
    • Mercury, cadmium, lead, and selenium in fish from a Norwegian fjord and off the coast, the importance of sampling locality
    • Berg V, Ugland KI, Hareide NR, Groenningen D, Skaare JU. 2000. Mercury, cadmium, lead, and selenium in fish from a Norwegian fjord and off the coast, the importance of sampling locality. J Environ Monit 2:375-377.
    • (2000) J Environ Monit , vol.2 , pp. 375-377
    • Berg, V.1    Ugland, K.I.2    Hareide, N.R.3    Groenningen, D.4    Skaare, J.U.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.