-
1
-
-
0023217711
-
Functional regions of the envelope glycoprotein of human immunodeficiency virus type 1
-
Kowalski, M., Potz, J., Basiripour, L., Dorfman, T., Goh, W. C., Terwilliger, E., Dayton, A., Rosen, C., Haseltine, W., and Sodroski, J. (1987) Functional regions of the envelope glycoprotein of human immunodeficiency virus type 1 Science 237, 1351-1355 (Pubitemid 17134619)
-
(1987)
Science
, vol.237
, Issue.4820
, pp. 1351-1355
-
-
Kowalski, M.1
Potz, J.2
Basiripour, L.3
-
2
-
-
0028864614
-
A trimeric subdomain of the simian immunodeficiency virus envelope glycoprotein
-
Blacklow, S. C., Lu, M., and Kim, P. S. (1995) A trimeric subdomain of the simian immunodeficiency virus envelope glycoprotein Biochemistry 34, 14955-14962
-
(1995)
Biochemistry
, vol.34
, pp. 14955-14962
-
-
Blacklow, S.C.1
Lu, M.2
Kim, P.S.3
-
3
-
-
0028834461
-
A trimeric structural domain of the HIV-1 transmembrane glycoprotein
-
Lu, M., Blacklow, S. C., and Kim, P. S. (1995) A trimeric structural domain of the HIV-1 transmembrane glycoprotein Nat. Struct. Biol. 2, 1075-1082
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 1075-1082
-
-
Lu, M.1
Blacklow, S.C.2
Kim, P.S.3
-
4
-
-
0021751840
-
The CD4 (T4) antigen is an essential component of the receptor for the AIDS retrovirus
-
DOI 10.1038/312763a0
-
Dalgleish, A. G., Beverley, P. C., Clapham, P. R., Crawford, D. H., Greaves, M. F., and Weiss, R. A. (1984) The CD4 (T4) antigen is an essential component of the receptor for the AIDS retrovirus Nature 312, 763-767 (Pubitemid 15195924)
-
(1984)
Nature
, vol.312
, Issue.5996
, pp. 763-767
-
-
Dalgleish, A.G.1
Beverley, P.C.L.2
Clapham, P.R.3
-
5
-
-
15844389650
-
+ cells is mediated by the chemokine receptor CC-CKR-5
-
DOI 10.1038/381667a0
-
Dragic, T., Litwin, V., Allaway, G. P., Martin, S. R., Huang, Y., Nagashima, K. A., Cayanan, C., Maddon, P. J., Koup, R. A., Moore, J. P., and Paxton, W. A. (1996) HIV-1 entry into CD4+ cells is mediated by the chemokine receptor CC-CKR-5 Nature 381, 667-673 (Pubitemid 26197680)
-
(1996)
Nature
, vol.381
, Issue.6584
, pp. 667-673
-
-
Dragic, T.1
Litwin, V.2
Allaway, G.P.3
Martin, S.R.4
Huang, Y.5
Nagashima, K.A.6
Cayanan, C.7
Maddon, P.J.8
Koup, R.A.9
Moore, J.P.10
Paxton, W.A.11
-
6
-
-
0025866185
-
Conformational changes induced in the human immunodeficiency virus envelope glycoprotein by soluble CD4 binding
-
Sattentau, Q. J. and Moore, J. P. (1991) Conformational changes induced in the human immunodeficiency virus envelope glycoprotein by soluble CD4 binding J. Exp. Med. 174, 407-415
-
(1991)
J. Exp. Med.
, vol.174
, pp. 407-415
-
-
Sattentau, Q.J.1
Moore, J.P.2
-
7
-
-
0027488547
-
Conformational changes induced in the envelope glycoproteins of the human and simian immunodeficiency viruses by soluble receptor binding
-
Sattentau, Q. J., Moore, J. P., Vignaux, F., Traincard, F., and Poignard, P. (1993) Conformational changes induced in the envelope glycoproteins of the human and simian immunodeficiency viruses by soluble receptor binding J. Virol. 67, 7383-7393 (Pubitemid 23343866)
-
(1993)
Journal of Virology
, vol.67
, Issue.12
, pp. 7383-7393
-
-
Sattentau, Q.J.1
Moore, J.P.2
Vignaux, F.3
Traincard, F.4
Poignard, P.5
-
8
-
-
0005014748
-
The β-chemokine receptors CCR3 and CCR5 facilitate infection by primary HIV-1 isolates
-
DOI 10.1016/S0092-8674(00)81313-6
-
Choe, H., Farzan, M., Sun, Y., Sullivan, N., Rollins, B., Ponath, P. D., Wu, L., Mackay, C. R., LaRosa, G., Newman, W., Gerard, N., Gerard, C., and Sodroski, J. (1996) The beta-chemokine receptors CCR3 and CCR5 facilitate infection by primary HIV-1 isolates Cell 85, 1135-1148 (Pubitemid 26231178)
-
(1996)
Cell
, vol.85
, Issue.7
, pp. 1135-1148
-
-
Choe, H.1
Farzan, M.2
Sun, Y.3
Sullivan, N.4
Rollins, B.5
Ponath, P.D.6
Wu, L.7
Mackay, C.R.8
LaRosa, G.9
Newman, W.10
Gerard, N.11
Gerard, C.12
Sodroski, J.13
-
9
-
-
0141789802
-
Total synthesis and structure revision of Stachybotrys spirolactams
-
Deng, W. P., Zhong, M., Guo, X. C., and Kende, A. S. (2003) Total Synthesis and Structure Revision of Stachybotrys Spirolactams J. Org. Chem. 68, 7422-7427 (Pubitemid 37122494)
-
(2003)
Journal of Organic Chemistry
, vol.68
, Issue.19
, pp. 7422-7427
-
-
Deng, W.-P.1
Zhong, M.2
Guo, X.-C.3
Kende, A.S.4
-
10
-
-
0030604727
-
A dual-tropic primary HIV-1 isolate that uses fusin and the β-chemokine receptors CKR-5, CKR-3, and CKR-2b as fusion cofactors
-
DOI 10.1016/S0092-8674(00)81314-8
-
Doranz, B. J., Rucker, J., Yi, Y., Smyth, R. J., Samson, M., Peiper, S. C., Parmentier, M., Collman, R. G., and Doms, R. W. (1996) A dual-tropic primary HIV-1 isolate that uses fusin and the beta-chemokine receptors CKR-5, CKR-3, and CKR-2b as fusion cofactors Cell 85, 1149-1158 (Pubitemid 26235280)
-
(1996)
Cell
, vol.85
, Issue.7
, pp. 1149-1158
-
-
Doranz, B.J.1
Rucker, J.2
Yi, Y.3
Smyth, R.J.4
Samson, M.5
Peiper, S.C.6
Parmentier, M.7
Collman, R.G.8
Doms, R.W.9
-
11
-
-
0030002637
-
HIV-1 entry cofactor: Functional cDNA cloning of a seven-transmembrane, G protein-coupled receptor
-
Feng, Y., Broder, C. C., Kennedy, P. E., and Berger, E. A. (1996) HIV-1 entry cofactor: functional cDNA cloning of a seven-transmembrane, G protein-coupled receptor Science 272, 872-877 (Pubitemid 26154590)
-
(1996)
Science
, vol.272
, Issue.5263
, pp. 872-877
-
-
Feng, Y.1
Broder, C.C.2
Kennedy, P.E.3
Berger, E.A.4
-
12
-
-
0024399763
-
Identification of the fusion peptide of primate immunodeficiency viruses
-
Bosch, M. L., Earl, P. L., Fargnoli, K., Picciafuoco, S., Giombini, F., Wong-Staal, F., and Franchini, G. (1989) Identification of the fusion peptide of primate immunodeficiency viruses Science 244, 694-697 (Pubitemid 19147680)
-
(1989)
Science
, vol.244
, Issue.4905
, pp. 694-697
-
-
Bosch, M.L.1
Earl, P.L.2
Fargnoli, K.3
Picciafuoco, S.4
Giombini, F.5
Wong-Staal, F.6
Franchini, G.7
-
13
-
-
0023908974
-
Mode of insertion into a lipid membrane of the N-terminal HIV gp41 peptide segment
-
Brasseur, R., Cornet, B., Burny, A., Vandenbranden, M., and Ruysschaert, J. M. (1988) Mode of insertion into a lipid membrane of the N-terminal HIV gp41 peptide segment AIDS Res. Hum. Retroviruses 4, 83-90
-
(1988)
AIDS Res. Hum. Retroviruses
, vol.4
, pp. 83-90
-
-
Brasseur, R.1
Cornet, B.2
Burny, A.3
Vandenbranden, M.4
Ruysschaert, J.M.5
-
14
-
-
0025223471
-
Changes in the transmembrane region of the human immunodeficiency virus type 1 gp41 envelope glycoprotein affect membrane fusion
-
Helseth, E., Olshevsky, U., Gabuzda, D., Ardman, B., Haseltine, W., and Sodroski, J. (1990) Changes in the transmembrane region of the human immunodeficiency virus type 1 gp41 envelope glycoprotein affect membrane fusion J. Virol. 64, 6314-6318
-
(1990)
J. Virol.
, vol.64
, pp. 6314-6318
-
-
Helseth, E.1
Olshevsky, U.2
Gabuzda, D.3
Ardman, B.4
Haseltine, W.5
Sodroski, J.6
-
15
-
-
0032546844
-
The HIV-1 envelope glycoproteins: Fusogens, antigens, and immunogens
-
DOI 10.1126/science.280.5371.1884
-
Wyatt, R. and Sodroski, J. (1998) The HIV-1 envelope glycoproteins fusogens antigens and immunogens Science 280, 1884-1888 (Pubitemid 28299385)
-
(1998)
Science
, vol.280
, Issue.5371
, pp. 1884-1888
-
-
Wyatt, R.1
Sodroski, J.2
-
16
-
-
21044438453
-
Scorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120: Crystal structures, molecular mimicry, and neutralization breadth
-
DOI 10.1016/j.str.2005.03.006, PII S0969212605001267
-
Huang, C. C., Stricher, F., Martin, L., Decker, J. M., Majeed, S., Barthe, P., Hendrickson, W. A., Robinson, J., Roumestand, C., Sodroski, J., Wyatt, R., Shaw, G. M., Vita, C., and Kwong, P. D. (2005) Scorpion-toxin mimics of CD4 in complex with human immunodeficiency virus gp120 crystal structures, molecular mimicry, and neutralization breadth Structure 13, 755-768 (Pubitemid 40704664)
-
(2005)
Structure
, vol.13
, Issue.5
, pp. 755-768
-
-
Huang, C.-C.1
Stricher, F.2
Martin, L.3
Decker, J.M.4
Majeed, S.5
Barthe, P.6
Hendrickson, W.A.7
Robinson, J.8
Roumestand, C.9
Sodroski, J.10
Wyatt, R.11
Shaw, G.M.12
Vita, C.13
Kwong, P.D.14
-
17
-
-
27744597054
-
Structural biology: Structure of a V3-containing HIV-1 gp120 core
-
DOI 10.1126/science.1118398
-
Huang, C. C., Tang, M., Zhang, M. Y., Majeed, S., Montabana, E., Stanfield, R. L., Dimitrov, D. S., Korber, B., Sodroski, J., Wilson, I. A., Wyatt, R., and Kwong, P. D. (2005) Structure of a V3-containing HIV-1 gp120 core Science 310, 1025-1028 (Pubitemid 41611916)
-
(2005)
Science
, vol.310
, Issue.5750
, pp. 1025-1028
-
-
Huang, C.-C.1
Tang, M.2
Zhang, M.-Y.3
Majeed, S.4
Montabana, E.5
Stanfield, R.L.6
Dimitrov, D.S.7
Korber, B.8
Sodroski, J.9
Wilson, I.A.10
Wyatt, R.11
Kwong, P.D.12
-
18
-
-
70450182950
-
Structural Basis of Immune Evasion at the Site of CD4 Attachment on HIV-1 gp120
-
Chen, L., Kwon, Y. D., Zhou, T., Wu, X., ODell, S., Cavacini, L., Hessell, A. J., Pancera, M., Tang, M., Xu, L., Yang, Z.-Y., Zhang, M.-Y., Arthos, J., Burton, D. R., Dimitrov, D. S., Nabel, G. J., Posner, M. R., Sodroski, J., Wyatt, R., Mascola, J. R., and Kwong, P. D. (2009) Structural Basis of Immune Evasion at the Site of CD4 Attachment on HIV-1 gp120 Science 326, 1123-1127
-
(2009)
Science
, vol.326
, pp. 1123-1127
-
-
Chen, L.1
Kwon, Y.D.2
Zhou, T.3
Wu, X.4
Odell, S.5
Cavacini, L.6
Hessell, A.J.7
Pancera, M.8
Tang, M.9
Xu, L.10
Yang, Z.-Y.11
Zhang, M.-Y.12
Arthos, J.13
Burton, D.R.14
Dimitrov, D.S.15
Nabel, G.J.16
Posner, M.R.17
Sodroski, J.18
Wyatt, R.19
Mascola, J.R.20
Kwong, P.D.21
more..
-
19
-
-
77951939875
-
Structure of a clade C HIV-1 gp120 bound to CD4 and CD4-induced antibody reveals anti-CD4 polyreactivity
-
Diskin, R., Marcovecchio, P. M., and Bjorkman, P. J. (2010) Structure of a clade C HIV-1 gp120 bound to CD4 and CD4-induced antibody reveals anti-CD4 polyreactivity Nat. Struct. Mol. Biol. 17, 608-613
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 608-613
-
-
Diskin, R.1
Marcovecchio, P.M.2
Bjorkman, P.J.3
-
20
-
-
77954943648
-
Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01
-
Zhou, T., Georgiev, I., Wu, X., Yang, Z. Y., Dai, K., Finzi, A., Kwon, Y. D., Scheid, J. F., Shi, W., Xu, L., Yang, Y., Zhu, J., Nussenzweig, M. C., Sodroski, J., Shapiro, L., Nabel, G. J., Mascola, J. R., and Kwong, P. D. (2010) Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01 Science 329, 811-817
-
(2010)
Science
, vol.329
, pp. 811-817
-
-
Zhou, T.1
Georgiev, I.2
Wu, X.3
Yang, Z.Y.4
Dai, K.5
Finzi, A.6
Kwon, Y.D.7
Scheid, J.F.8
Shi, W.9
Xu, L.10
Yang, Y.11
Zhu, J.12
Nussenzweig, M.C.13
Sodroski, J.14
Shapiro, L.15
Nabel, G.J.16
Mascola, J.R.17
Kwong, P.D.18
-
21
-
-
0032543307
-
Structure of an HIV gp 120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody
-
DOI 10.1038/31405
-
Kwong, P. D., Wyatt, R., Robinson, J., Sweet, R. W., Sodroski, J., and Hendrickson, W. A. (1998) Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody Nature 393, 648-659 (Pubitemid 28289647)
-
(1998)
Nature
, vol.393
, Issue.6686
, pp. 648-659
-
-
Kwong, P.D.1
Wyatt, R.2
Robinson, J.3
Sweet, R.W.4
Sodroski, J.5
Hendrickson, W.A.6
-
22
-
-
0034482696
-
Structures of HIV-1 gp120 envelope glycoproteins from laboratory-adapted and primary isolates
-
DOI 10.1016/S0969-2126(00)00547-5, PII S0969212600005475
-
Kwong, P. D., Wyatt, R., Majeed, S., Robinson, J., Sweet, R. W., Sodroski, J., and Hendrickson, W. A. (2000) Structures of HIV-1 gp120 envelope glycoproteins from laboratory-adapted and primary isolates Struct. Fold. Des. 8 (8) 1329-1339 (Pubitemid 32149759)
-
(2000)
Structure
, vol.8
, Issue.12
, pp. 1329-1339
-
-
Kwong, P.D.1
Wyatt, R.2
Majeed, S.3
Robinson, J.4
Sweet, R.W.5
Sodroski, J.6
Hendrickson, W.A.7
-
23
-
-
0026650992
-
The human immunodeficiency virus gp120 binding site on CD4: Delineation by quantitative equilibrium and kinetic binding studies of mutants in conjunction with a high-resolution CD4 atomic structure
-
Moebius, U., Clayton, L. K., Abraham, S., Harrison, S. C., and Reinherz, E. L. (1992) The human immunodeficiency virus gp120 binding site on CD4: delineation by quantitative equilibrium and kinetic binding studies of mutants in conjunction with a high-resolution CD4 atomic structure J. Exp. Med. 176, 507-517
-
(1992)
J. Exp. Med.
, vol.176
, pp. 507-517
-
-
Moebius, U.1
Clayton, L.K.2
Abraham, S.3
Harrison, S.C.4
Reinherz, E.L.5
-
24
-
-
13844302894
-
Structure of an unliganded simian immunodeficiency virus gp120 core
-
DOI 10.1038/nature03327
-
Chen, B., Vogan, E. M., Gong, H., Skehel, J. J., Wiley, D. C., and Harrison, S. C. (2005) Structure of an unliganded simian immunodeficiency virus gp120 core Nature 433, 834-841 (Pubitemid 40314887)
-
(2005)
Nature
, vol.433
, Issue.7028
, pp. 834-841
-
-
Chen, B.1
Vogan, E.M.2
Gong, H.3
Skehel, J.J.4
Wiley, D.C.5
Harrison, S.C.6
-
25
-
-
34249827906
-
Characterization of human immunodeficiency virus type 1 monomeric and trimeric gp120 glycoproteins stabilized in the CD4-bound state: Antigenicity, biophysics, and immunogenicity
-
DOI 10.1128/JVI.02500-06
-
Dey, B., Pancera, M., Svehla, K., Shu, Y., Xiang, S. H., Vainshtein, J., Li, Y., Sodroski, J., Kwong, P. D., Mascola, J. R., and Wyatt, R. (2007) Characterization of human immunodeficiency virus type 1 monomeric and trimeric gp120 glycoproteins stabilized in the CD4-bound state: antigenicity, biophysics, and immunogenicity J. Virol. 81, 5579-5593 (Pubitemid 46846998)
-
(2007)
Journal of Virology
, vol.81
, Issue.11
, pp. 5579-5593
-
-
Dey, B.1
Pancera, M.2
Svehla, K.3
Shu, Y.4
Xiang, S.-H.5
Vainshtein, J.6
Li, Y.7
Sodroski, J.8
Kwong, P.D.9
Mascola, J.R.10
Wyatt, R.11
-
26
-
-
0034255034
-
Energetics of the HIV gp120-CD4 binding reaction
-
DOI 10.1073/pnas.97.16.9026
-
Myszka, D. G., Sweet, R. W., Hensley, P., Brigham-Burke, M., Kwong, P. D., Hendrickson, W. A., Wyatt, R., Sodroski, J., and Doyle, M. L. (2000) Energetics of the HIV gp120-CD4 binding reaction Proc. Natl. Acad. Sci. U.S.A. 97, 9026-9031 (Pubitemid 30626667)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.16
, pp. 9026-9031
-
-
Myszka, D.G.1
Sweet, R.W.2
Hensley, P.3
Brigham-Burke, M.4
Kwong, P.D.5
Hendrickson, W.A.6
Wyatt, R.7
Sodroski, J.8
Doyle, M.L.9
-
27
-
-
33748491260
-
Thermodynamics of binding of a low-molecular-weight CD4 mimetic to HIV-1 gp120
-
DOI 10.1021/bi061193r
-
Schon, A., Madani, N., Klein, J. C., Hubicki, A., Ng, D., Yang, X., Smith, A. B., 3rd, Sodroski, J., and Freire, E. (2006) Thermodynamics of binding of a low-molecular-weight CD4 mimetic to HIV-1 gp120 Biochemistry 45, 10973-10980 (Pubitemid 44360167)
-
(2006)
Biochemistry
, vol.45
, Issue.36
, pp. 10973-10980
-
-
Schon, A.1
Madani, N.2
Klein, J.C.3
Hubicki, A.4
Ng, D.5
Yang, X.6
Smith III, A.B.7
Sodroski, J.8
Freire, E.9
-
28
-
-
23844440296
-
Identification of N-phenyl-N′-(2,2,6,6-tetramethyl-piperidin-4-yl)- oxalamides as a new class of HIV-1 entry inhibitors that prevent gp120 binding to CD4
-
DOI 10.1016/j.virol.2005.06.008, PII S0042682205003363
-
Zhao, Q., Ma, L., Jiang, S., Lu, H., Liu, S., He, Y., Strick, N., Neamati, N., and Debnath, A. K. (2005) Identification of N-phenyl-N′-(2,2, 6,6-tetramethyl-piperidin-4-yl)-oxalamides as a new class of HIV-1 entry inhibitors that prevent gp120 binding to CD4 Virology 339, 213-225 (Pubitemid 41169789)
-
(2005)
Virology
, vol.339
, Issue.2
, pp. 213-225
-
-
Zhao, Q.1
Ma, L.2
Jiang, S.3
Lu, H.4
Liu, S.5
He, Y.6
Strick, N.7
Neamati, N.8
Debnath, A.K.9
-
29
-
-
66349110542
-
Soluble CD4 and CD4-mimetic compounds inhibit HIV-1 infection by induction of a short-lived activated state
-
Haim, H., Si, Z., Madani, N., Wang, L., Courter, J. R., Princiotto, A., Kassa, A., DeGrace, M., McGee-Estrada, K., Mefford, M., Gabuzda, D., Smith, A. B., III, and Sodroski, J. (2009) Soluble CD4 and CD4-mimetic compounds inhibit HIV-1 infection by induction of a short-lived activated state PLoS Pathog. 5, e1000360
-
(2009)
PLoS Pathog.
, vol.5
, pp. 1000360
-
-
Haim, H.1
Si, Z.2
Madani, N.3
Wang, L.4
Courter, J.R.5
Princiotto, A.6
Kassa, A.7
Degrace, M.8
McGee-Estrada, K.9
Mefford, M.10
Gabuzda, D.11
Smith III, A.B.12
Sodroski, J.13
-
30
-
-
55249083812
-
Small-molecule CD4 mimics interact with a highly conserved pocket on HIV-1 gp120
-
Madani, N., Schon, A., Princiotto, A. M., Lalonde, J. M., Courter, J. R., Soeta, T., Ng, D., Wang, L., Brower, E. T., Xiang, S. H., Kwon, Y. D., Huang, C. C., Wyatt, R., Kwong, P. D., Freire, E., Smith, A. B., 3rd, and Sodroski, J. (2008) Small-molecule CD4 mimics interact with a highly conserved pocket on HIV-1 gp120 Structure 16, 1689-1701
-
(2008)
Structure
, vol.16
, pp. 1689-1701
-
-
Madani, N.1
Schon, A.2
Princiotto, A.M.3
Lalonde, J.M.4
Courter, J.R.5
Soeta, T.6
Ng, D.7
Wang, L.8
Brower, E.T.9
Xiang, S.H.10
Kwon, Y.D.11
Huang, C.C.12
Wyatt, R.13
Kwong, P.D.14
Freire, E.15
Smith III, A.B.16
Sodroski, J.17
-
31
-
-
78650721466
-
Design, synthesis and biological evaluation of small molecule inhibitors of CD4-gp120 binding based on virtual screening
-
LaLonde, J. M., Elban, M. A., Courter, J. R., Sugawara, A., Soeta, T., Madani, N., Princiotto, A., Kwon, Y. D., Kwong, P. D., Schön, A., Freire, E., Sodroski, J., and Smith, A. B. (2011) Design, synthesis and biological evaluation of small molecule inhibitors of CD4-gp120 binding based on virtual screening Bioorg. Med. Chem. 19 (1) 91-101
-
(2011)
Bioorg. Med. Chem.
, vol.19
, Issue.1
, pp. 91-101
-
-
Lalonde, J.M.1
Elban, M.A.2
Courter, J.R.3
Sugawara, A.4
Soeta, T.5
Madani, N.6
Princiotto, A.7
Kwon, Y.D.8
Kwong, P.D.9
Schön, A.10
Freire, E.11
Sodroski, J.12
Smith, A.B.13
-
32
-
-
2442484923
-
Atomic Insight into the CD4 Binding-Induced Conformational Changes in HIV-1 gp120
-
DOI 10.1002/prot.20061
-
Hsu, S.-T. D. and Bonvin, A. M. J. J. (2004) Atomic insight into the CD4 binding-induced conformational changes in HIV-1 gp120 Proteins: Struct., Funct., Bioinf. 55, 582-593 (Pubitemid 38620083)
-
(2004)
Proteins: Structure, Function and Genetics
, vol.55
, Issue.3
, pp. 582-593
-
-
Hsu, S.-T.D.1
Bonvin, A.M.J.J.2
-
33
-
-
11244302391
-
Entropy Calculation of HIV-1 Env gp120, its Receptor CD4, and their Complex: An Analysis of Configurational Entropy Changes upon Complexation
-
Hsu, S.-T. D., Peter, D., van Gunsteren, W. F., and Bonvin, A. M. J. J. (2005) Entropy Calculation of HIV-1 Env gp120, its Receptor CD4, and their Complex: An Analysis of Configurational Entropy Changes upon Complexation Biophys. J. 88, 14-24
-
(2005)
Biophys. J.
, vol.88
, pp. 14-24
-
-
Hsu, S.-T.D.1
Peter, D.2
Van Gunsteren, W.F.3
Bonvin, A.M.J.J.4
-
34
-
-
48449101048
-
Molecular motions of human HIV-1 gp120 envelope glycoproteins
-
Liu, S. Q., Liu, S. X., and Fu, Y. X. (2008) Molecular motions of human HIV-1 gp120 envelope glycoproteins J. Mol. Model. 14, 857-870
-
(2008)
J. Mol. Model.
, vol.14
, pp. 857-870
-
-
Liu, S.Q.1
Liu, S.X.2
Fu, Y.X.3
-
35
-
-
3142689719
-
Characterization of the conformational state and flexibility of HIV-1 glycoprotein gp120 core domain
-
DOI 10.1074/jbc.M404364200
-
Pan, Y., Ma, B., Keskin, O., and Nussinov, R. (2004) Characterization of the conformational state and flexibility of HIV-1 glycoprotein gp120 core domain J. Biol. Chem. 279, 30523-30530 (Pubitemid 38937983)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.29
, pp. 30523-30530
-
-
Pan, Y.1
Ma, B.2
Keskin, O.3
Nussinov, R.4
-
36
-
-
20444468970
-
CD4 binding partially locks the bridging sheet in gp120 but leaves the β2/3 strands flexible
-
DOI 10.1016/j.jmb.2005.05.009, PII S0022283605005280
-
Pan, Y., Ma, B., and Nussinov, R. (2005) CD4 binding partially locks the bridging sheet in gp120 but leaves the beta2/3 strands flexible J. Mol. Biol. 350, 514-527 (Pubitemid 40828911)
-
(2005)
Journal of Molecular Biology
, vol.350
, Issue.3
, pp. 514-527
-
-
Pan, Y.1
Ma, B.2
Nussinov, R.3
-
37
-
-
61449127303
-
Identification of putative, stable binding regions through flexibility analysis of HIV-1 gp120
-
not supplied
-
Tan, H. and Rader, A. J. Identification of putative, stable binding regions through flexibility analysis of HIV-1 gp120. Proteins 2009, not supplied.
-
(2009)
Proteins
-
-
Tan, H.1
Rader, A.J.2
-
38
-
-
70350391835
-
Understanding of the Brdiging Sheet Formation of HIV-1 Glycoprotein gp120
-
Da, L.-T., Quan, J.-M., and Wu, Y. D. (2009) Understanding of the Brdiging Sheet Formation of HIV-1 Glycoprotein gp120 J. Phys. Chem. B 113, 14536-14543
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 14536-14543
-
-
Da, L.-T.1
Quan, J.-M.2
Wu, Y.D.3
-
39
-
-
77950448255
-
Large-scale conformational sampling of proteins using temperature-accelerated molecular dynamics
-
Abrams, C. F. and Vanden-Eijnden, E. (2010) Large-scale conformational sampling of proteins using temperature-accelerated molecular dynamics Proc. Natl. Acad. Sci. U.S.A. 107, 4961-4966
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 4961-4966
-
-
Abrams, C.F.1
Vanden-Eijnden, E.2
-
40
-
-
77957968574
-
Fluctuation dynamics analysis of gp120 envelope protein reveals a topologically based communication network
-
Shrivastava, I. and LaLonde, J. M. (2010) Fluctuation dynamics analysis of gp120 envelope protein reveals a topologically based communication network Proteins: Struct., Funct., Bioinf. 78, 2935-2949
-
(2010)
Proteins: Struct., Funct., Bioinf.
, vol.78
, pp. 2935-2949
-
-
Shrivastava, I.1
Lalonde, J.M.2
-
41
-
-
0000496772
-
Vibrational dynamics of folded proteins: Significance of slow and fast motions in relation to function and stability
-
Bahar, I., Atilgan, A. R., Demirel, M. C., and Erman, B. (1998) Vibrational dynamics of folded proteins: significance of slow and fast modes in relation to function and stability Phys. Rev. Lett. 80, 2733-2736 (Pubitemid 128621654)
-
(1998)
Physical Review Letters
, vol.80
, Issue.12
, pp. 2733-2736
-
-
Bahar, I.1
Atilgan, A.R.2
Demirel, M.C.3
Erman, B.4
-
42
-
-
0032483483
-
Vibrational dynamics of transfer RNAs: Comparison of the free and synthetase-bound forms
-
DOI 10.1006/jmbi.1998.1978
-
Bahar, I. and Jernigan, R. L. (1998) Vibrational dynamics of transfer RNAs: a comparison of the free synthetase bound forms J. Mol. Biol. 281, 871-884 (Pubitemid 28408435)
-
(1998)
Journal of Molecular Biology
, vol.281
, Issue.5
, pp. 871-884
-
-
Bahar, I.1
Jernigan, R.L.2
-
43
-
-
0032570266
-
Correlation between native-state hydrogen exchange and cooperative residue fluctuations from a simple model
-
DOI 10.1021/bi9720641
-
Bahar, I., Wallqvist, D. G., Covell, D. G., and Jernigan, R. L. (1998) Correlation between native-state hydrogen exchange and cooperative residue fluctuations from a simple model Biochemistry 37, 1067-1075 (Pubitemid 28100609)
-
(1998)
Biochemistry
, vol.37
, Issue.4
, pp. 1067-1075
-
-
Bahar, I.1
Wallqvist, A.2
Covell, D.G.3
Jernigan, R.L.4
-
44
-
-
0345973041
-
Gaussian dynamics of folded proteins
-
Haliloglu, T., Bahar, I., and Erman, B. (1997) Gaussian dynamics of folded proteins Phys. Rev. Lett. 79, 3090-3093 (Pubitemid 127645089)
-
(1997)
Physical Review Letters
, vol.79
, Issue.16
, pp. 3090-3093
-
-
Haliloglu, T.1
Bahar, I.2
Erman, B.3
-
45
-
-
79955804686
-
-
MOE, Molecular Operating Environment 2006.08 ed., Chemical Computing Group, Montreal, Canada, (2006)
-
MOE, Molecular Operating Environment 2006.08 ed., Chemical Computing Group, Montreal, Canada, (2006).
-
-
-
-
46
-
-
5544242529
-
MMFF VI. MMFF94s option for energy minimization studies
-
Halgren, T. A. (1999) MMFF VI. MMFF94s option for energy minimization studies J. Comput. Chem. 20, 720-729 (Pubitemid 129652635)
-
(1999)
Journal of Computational Chemistry
, vol.20
, Issue.7
, pp. 720-729
-
-
Halgren, T.A.1
-
47
-
-
0001242234
-
MMFF MMFF VII. Characterization of MMFF94, MMFF94s, and other widely available force fields for conformational energies and for intermolecular- interaction energies and geometries
-
Halgren, T. A. (1999) MMFF MMFF VII. Characterization of MMFF94, MMFF94s, and other widely available force fields for conformational energies and for intermolecular-interaction energies and geometries J. Comput. Chem. 20, 740-774
-
(1999)
J. Comput. Chem.
, vol.20
, pp. 740-774
-
-
Halgren, T.A.1
-
48
-
-
0037441653
-
Structure validation by Cα geometry: φ,ψ and Cβ deviation
-
DOI 10.1002/prot.10286
-
Lovell, S. C., Davis, I. W., Arendall, W. B., III, de Bakker, P. I., Word, J. M., Prisant, M. G., Richardson, J. S., and Richardson, D. C. (2003) Structure validation by Calpha geometry: phi,psi and Cbeta deviation Proteins 50, 437-450 (Pubitemid 36158457)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.50
, Issue.3
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall III, W.B.3
De Bakker, P.I.W.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
49
-
-
0033614004
-
Asparagine and glutamine: Using hydrogen atom contacts in the choice of side-chain amide orientation
-
DOI 10.1006/jmbi.1998.2401
-
Word, J., Lovell, S., Richardson, J., and Richardson, D. (1999) Asparagine and glutamine: Using hydrogen atom contacts in the choice of side-chain amide orientation J. Mol. Biol. 285, 1735-1747 (Pubitemid 29060467)
-
(1999)
Journal of Molecular Biology
, vol.285
, Issue.4
, pp. 1735-1747
-
-
Word, J.M.1
Lovell, S.C.2
Richardson, J.S.3
Richardson, D.C.4
-
50
-
-
0029912748
-
Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
-
DOI 10.1021/ja9621760, PII S0002786396021762
-
Jorgensen, W. L., Maxwell, D. S., and Tirado-Rives, J. (1996) Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids J. Am. Chem. Soc. 117, 11225-11236 (Pubitemid 26399746)
-
(1996)
Journal of the American Chemical Society
, vol.118
, Issue.45
, pp. 11225-11236
-
-
Jorgensen, W.L.1
Maxwell, D.S.2
Tirado-Rives, J.3
-
51
-
-
13944260141
-
Prediction of binding modes for ligands in the cytochromes P450 and other heme-containing proteins
-
DOI 10.1002/prot.20389
-
Kirton, S. B., Murray, C. W., Verdonk, M. L., and Taylor, R. D. (2005) Prediction of binding modes for ligands in the cytochromes P450 and other heme-containing proteins Proteins 58, 836-844 (Pubitemid 40271248)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.58
, Issue.4
, pp. 836-844
-
-
Kirton, S.B.1
Murray, C.W.2
Verdonk, M.L.3
Taylor, R.D.4
-
52
-
-
0041919542
-
Improved protein-ligand docking using GOLD
-
DOI 10.1002/prot.10465
-
Verdonk, M. L., Cole, J. C., Hartshorn, M. J., Murray, C. W., and Taylor, R. D. (2003) Improved Protein-Ligand Docking Using GOLD Proteins 52, 609-623 (Pubitemid 37034158)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.52
, Issue.4
, pp. 609-623
-
-
Verdonk, M.L.1
Cole, J.C.2
Hartshorn, M.J.3
Murray, C.W.4
Taylor, R.D.5
-
53
-
-
27344454932
-
GROMACS Fast Flexible and Free
-
VanDerSpoel, E., Lindahl, B., Hess, G., Groenhof, A. M., and Berendsen, H. (2005) GROMACS Fast Flexible and Free J. Comput. Chem. 26, 1701-1718
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1701-1718
-
-
Vanderspoel, E.1
Lindahl, B.2
Hess, G.3
Groenhof, A.M.4
Berendsen, H.5
-
54
-
-
0008819754
-
The GROMOS biomolecular simulation program package
-
Scott, W. R. P., Hunenberger, P. H., Tironi, I. G., Mark, A. E., Billeter, S. R., Fennen, J., Torda, A. E., Huber, T., Kruger, P., and van Gunsteren, W. F. (1999) The GROMOS biomolecular simulation program package J. Phys. Chem. A 103, 3596-3607 (Pubitemid 129570863)
-
(1999)
Journal of Physical Chemistry A
, vol.103
, Issue.19
, pp. 3596-3607
-
-
Scott, W.R.P.1
Hunenberger, P.H.2
Tironi, I.G.3
Mark, A.E.4
Billeter, S.R.5
Fennen, J.6
Torda, A.E.7
Huber, T.8
Kruger, P.9
Van Gunsteren, W.F.10
-
55
-
-
1242346370
-
-
Berendsen, H. J. C., Grigera, J. R., and Straatsma, P. R. (1987) J. Phys. Chem. 91, 6269-6271
-
(1987)
J. Phys. Chem.
, vol.91
, pp. 6269-6271
-
-
Berendsen, H.J.C.1
Grigera, J.R.2
Straatsma, P.R.3
-
56
-
-
0000388705
-
LINCS: A Linear Constraint Solver for molecular simulations
-
Hess, B., Bekker, H., Berendsen, H. J. C., and Fraaije, J. (1997) A linear constraint solver for molecular simulations J. Comput. Chem. 18, 1463-1472 (Pubitemid 127637344)
-
(1997)
Journal of Computational Chemistry
, vol.18
, Issue.12
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
57
-
-
33846823909
-
Particle mesh Ewald - An N.log(N) method for Ewald sums in large systems
-
Darden, T., York, D., and Pedersen, L. (1993) Particle mesh Ewald - An N.log(N) method for Ewald sums in large systems J. Chem. Phys. 98, 10089-10092
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
58
-
-
33847101745
-
Structural definition of a conserved neutralization epitope on HIV-1 gp120
-
DOI 10.1038/nature05580, PII NATURE05580
-
Zhou, T., Xu, L., Dey, B., Hessell, A. J., Van Ryk, D., Xiang, S. H., Yang, X., Zhang, M. Y., Zwick, M. B., Arthos, J., Burton, D. R., Dimitrov, D. S., Sodroski, J., Wyatt, R., Nabel, G. J., and Kwong, P. D. (2007) Structural definition of a conserved neutralization epitope on HIV-1 gp120 Nature 445, 732-737 (Pubitemid 46279718)
-
(2007)
Nature
, vol.445
, Issue.7129
, pp. 732-737
-
-
Zhou, T.1
Xu, L.2
Dey, B.3
Hessell, A.J.4
Van Ryk, D.5
Xiang, S.-H.6
Yang, X.7
Zhang, M.-Y.8
Zwick, M.B.9
Arthos, J.10
Burton, D.R.11
Dimitrov, D.S.12
Sodroski, J.13
Wyatt, R.14
Nabel, G.J.15
Kwong, P.D.16
-
59
-
-
70450182950
-
Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120
-
Chen, L., Kwon, Y. D., Zhou, T., Wu, X., O'Dell, S., Cavacini, L., Hessell, A. J., Pancera, M., Tang, M., Xu, L., Yang, Z. Y., Zhang, M. Y., Arthos, J., Burton, D. R., Dimitrov, D. S., Nabel, G. J., Posner, M. R., Sodroski, J., Wyatt, R., Mascola, J. R., and Kwong, P. D. (2009) Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120 Science 326, 1123-1127
-
(2009)
Science
, vol.326
, pp. 1123-1127
-
-
Chen, L.1
Kwon, Y.D.2
Zhou, T.3
Wu, X.4
O'Dell, S.5
Cavacini, L.6
Hessell, A.J.7
Pancera, M.8
Tang, M.9
Xu, L.10
Yang, Z.Y.11
Zhang, M.Y.12
Arthos, J.13
Burton, D.R.14
Dimitrov, D.S.15
Nabel, G.J.16
Posner, M.R.17
Sodroski, J.18
Wyatt, R.19
Mascola, J.R.20
Kwong, P.D.21
more..
-
60
-
-
79551704622
-
Some Drug Properties are Dependent on Thermodynamic Signature
-
Schän, A., Madani, N., Smith, A. B., III, LaLonde, J. M., and Freire, J. (2011) Some Drug Properties are Dependent on Thermodynamic Signature Chemical Biology & Drug Design 77, 161-165
-
(2011)
Chemical Biology & Drug Design
, vol.77
, pp. 161-165
-
-
Schän, A.1
Madani, N.2
Smith III, A.B.3
Lalonde, J.M.4
Freire, J.5
|