Hydrophilic interaction liquid chromatography (HILIC) in proteomics

Analytical and Bioanalytical Chemistry

Volumn 391, Issue 1, 2008, Pages 151-159

  Boersema, Paul J ^a   Mohammed, Shabaz ^a   Heck, Albert J R ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

Author keywords

HILIC; Post translational modification; Proteomics; Two dimensional liquid chromatography

Indexed keywords

CHEMICAL MODIFICATION; HYDROPHILICITY; ION EXCHANGE; LIQUID CHROMATOGRAPHY; SEPARATION; TWO DIMENSIONAL;

POST-TRANSLATIONAL MODIFICATION; TWO-DIMENSIONAL LIQUID CHROMATOGRAPHY; WHOLE-CELL LYSATES;

PEPTIDES;

WATER;

ARTICLE; CHEMISTRY; LIQUID CHROMATOGRAPHY; METHODOLOGY; PROTEOMICS; WETTABILITY;

CHROMATOGRAPHY, LIQUID; PROTEOMICS; WATER; WETTABILITY;

EID: 42449147408     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-008-1865-7     Document Type: Article

References (82)

1. Linden JC, Lawhead CL (1975) J Chromatogr A 105:125-133
2. Hemström P, Irgum K (2006) J Sep Sci 29:1784-1821
3. Strege MA, Stevenson S, Lawrence SM (2000) Anal Chem 72:4629-4633
4. Risley DS, Strege MA (2000) Anal Chem 72:1736-1739
5. Sarg B, Koutzamani E, Helliger W, Rundquist I, Lindner HH (2002) J Biol Chem 277:39195-39201
6. Sarg B, Helliger W, Hoertnagl B, Puschendorf B, Lindner H (1999) Arch Biochem Biophys 372:333-339
7. Lindner H, Sarg B, Grunicke H, Helliger W (1999) J Cancer Res Clin Oncol 125:182-186
8. Xu RN, Fan L, Rieser MJ, El-Shourbagy TA (2007) J Pharm Biomed Anal 44:342-355
9. Naidong W (2003) J Chromatogr B 796:209-224
10. Guo Y, Gaiki S (2005) J Chromatogr A 1074:71-80
11. Gilar M, Olivova P, Daly AE, Gebler JC (2005) Anal Chem 77:6426-6434
12. Boersema PJ, Divecha N, Heck AJR, Mohammed S (2007) J Proteome Res 6:937-946
13. Wang XD, Li WY, Rasmussen HT (2005) J Chromatogr A 1083:58-62
14. Hagglund P, Bunkenborg J, Elortza F, Jensen ON, Roepstorff P (2004) J Proteome Res 3:556-566
15. McNulty DE, Annan RS (2007) In: 55th ASMS Conf Mass Spectrometry, Indianapolis, IN, 3-7 June 2007
16. Alpert AJ, Andrews PC (1988) J Chromatogr 443:85-96
17. Alpert AJ (1990) J Chromatogr 499:177-196
18. Zhu B-Y, Mant CT, Hodges RS (1991) J Chromatogr A 548:13-24
19. Nikolov ZL, Reilly PJ (1985) J Chromatogr A 325:287-293
20. Kirkland JJ, Dilks CH, Destefano JJ (1993) J Chromatogr 635:19-30
21. Lindner H, Sarg B, Meraner C, Helliger W (1996) J Chromatogr A 743:137-144
22. Ytterberg JA, Ogorzalek-Loo RR, Boontheung P, Loo JA (2007) In: 55th ASMS Conf Mass Spectrometry, Indianapolis, IN, 3-7 June 2007
23. Alpert AJ (2008) Anal Chem 80:62-76
24. Yoshida T (1997) Anal Chem 69:3038-3043
25. Tomiya N, Awaya J, Kurono M, Endo S, Arata Y, Takahashi N (1988) Anal Biochem 171:73-90
26. Guo Z, Lei A, Zhang Y, Xu Q, Xue X, Zhang F, Liang X (2007) Chem Commun (Camb) 24:2491-2493
27. Alpert AJ, Gygi SP, Shookla AK (2007) In: 55th ASMS Conf Mass Spectrometry, Indianapolis, IN, 3-7 June 2007
28. Rabilloud T (2002) Proteomics 2:3-10
29. Wang H, Hanash S (2003) J Chromatogr B 787:11-18
30. Nagele E, Vollmer M, Horth P, Vad C (2004) Expert Rev Proteomics 1:37-46
31. Dong M-Q, Venable JD, Au N, Xu T, Park SK, Cociorva D, Johnson JR, Dillin A, Yates JR III (2007) Science 317:660-663
32. Brunner E, Ahrens CH, Mohanty S, Baetschmann H, Loevenich S, Potthast F, Deutsch EW, Panse C, de Lichtenberg U, Rinner O, Lee H, Pedrioli PGA, Malmstrom J, Koehler K, Schrimpf S, Krijgsveld J, Kregenow F, Heck AJR, Hafen E, Schlapbach R, Aebersold R (2007) Nat Biotech 25:576-583
33. Dormeyer W, Mohammed S, Breukelen Bv, Krijgsveld J, Heck AJR (2007) J Proteome Res 6:4634-4645
34. Washburn MP, Wolters D, Yates JR (2001) Nat Biotech 19:242-247
35. Lemieux L, Amiot J (1989) J Chromatogr 473:189-206
36. Opiteck GJ, Jorgenson JW, Anderegg RJ (1997) Anal Chem 69:2283-2291
37. Gilar M, Olivova P, Daly AE, Gebler JC (2005) J Sep Sci 28:1694-1703
38. Peng JM, Elias JE, Thoreen CC, Licklider LJ, Gygi SP (2003) J Proteome Res 2:43-50
39. Wagner K, Miliotis T, Marko-Varga G, Bischoff R, Unger KK (2002) Anal Chem 74:809-820
40. Vollmer M, Horth P, Nagele E (2004) Anal Chem 76:5180-5185
41. Pack BW, Risley DS (2005) J Chromatogr A 1073:269-275
42. Horie K, Ikegami T, Hosoya K, Saad N, Fiehn O, Tanaka N (2007) J Chromatogr A 1164:198-205
43. Ikegami T, Fujita H, Horie K, Hosoya K, Tanaka N (2006) Anal Bioanal Chem 386:578-585
44. Ikegami T, Horie K, Jaafar J, Hosoya K, Tanaka N (2007) J Biochem Biophys Methods 70:31-37
45. Ye F, Xie Z, Wong KY (2006) Electrophoresis 27:3373-3380
46. McLachlin DT, Chait BT (2001) Curr Opin Chem Biol 5:591-602
47. Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villen J, Li JX, Cohn MA, Cantley LC, Gygi SP (2004) Proc Natl Acad Sci USA 101:12130-12135
48. Hakansson K, Chalmers MJ, Quinn JP, McFarland MA, Hendrickson CL, Marshall AG (2003) Anal Chem 75:3256-3262
49. Syka JEP, Coon JJ, Schroeder MJ, Shabanowitz J, Hunt DF (2004) Proc Natl Acad Sci USA 101:9528-9533
50. Posewitz MC, Tempst P (1999) Anal Chem 71:2883-2892
51. Pinkse MWH, Uitto PM, Hilhorst MJ, Ooms B, Heck AJR (2004) Anal Chem 76:3935-3943
52. Pinkse MWH, Mohammed S, Gouw JW, van Breukelen B, Vos HR, Heck AJR (2008) J Proteome Res 7:687-697 DOI 10.1021/pr700605z
53. Reinders J, Sickmann A (2005) Proteomics 5:4052-4061
54. Gruhler A, Olsen JV, Mohammed S, Mortensen P, Faergeman NJ, Mann M, Jensen ON (2005) Mol Cell Proteomics 4:310-327
55. Molina H, Horn DM, Tang N, Mathivanan S, Pandey A (2007) Proc Natl Acad Sci USA 104:2199-2204
56. Benschop JJ, Mohammed S, O'Flaherty MC, Heck AJR, Slijper M, Menke FLH (2007) Mol Cell Proteomics 6:1198-1214
57. Dai J, Jin WH, Sheng QH, Shieh CH, Wu JR, Zeng R (2007) J Proteome Res 6:250-262
58. Motoyama A, Xu T, Ruse CI, Wohlschlegel JA, Yates JR (2007) Anal Chem 79:3623-3634
59. Polevoda B, Sherman F (2003) Biochem Biophys Res Commun 308:1-11
60. Polevoda B, Sherman F (2003) J Mol Biol 325:595-622
61. Aivaliotis M, Gevaert K, Falb M, Tebbe A, Konstantinidis K, Bisle B, Klein C, Martens L, Staes A, Timmerman E, VanDamme J, Siedler F, Pfeiffer F, Vandekerckhove J, Oesterhelt D (2007) J Proteome Res 6:2195-2204
62. Lis H, Sharon N (1993) Eur J Biochem 218:1-27
63. Apweiler R, Hermjakob H, Sharon N (1999) Biochim Biophys Acta 1473:4-8
64. Yu YQ, Gilar M, Kaska J, Gebler JC (2005) Rapid Commun Mass Spectrom 19:2331-2336
65. Yu YQ, Fournier J, Gilar M, Gebler JC (2007) Anal Chem 79:1731-1738
66. Hagglund P, Matthiesen R, Elortza F, Hojrup P, Roepstorff P, Jensen ON, Bunkenborg J (2007) J Proteome Res 6:3021-3031
67. Zhang JF, Wang DIC (1998) J Chromatogr B 712:73-82
68. Takegawa Y, Deguchi K, Ito H, Keira T, Nakagawa H, Nishimura S (2006) J Sep Sci 29:2533-2540
69. Kaji H, Yamauchi Y, Takahashi N, Isobe T (2006) Nat Protoc 1:3019-3027
70. Thaysen-Andersen M, Thogersen IB, Nielsen HJ, Lademann U, Brunner N, Enghild JJ, Hojrup P (2007) Mol Cell Proteomics 6:638-647
71. Omaetxebarria MJ, Hagglund P, Elortza F, Hooper NM, Arizmendi JM, Jensen ON (2006) Anal Chem 78:3335-3341
72. Kaji H, Kamiie J-i, Kawakami H, Kido K, Yamauchi Y, Shinkawa T, Taoka M, Takahashi N, Isobe T (2007) Mol Cell Proteomics 6(12):2100-2109
73. Wuhrer M, Koeleman CAM, Hokke CH, Deelder AM (2005) Anal Chem 77:886-894
74. Zhao J, Qiu W, Simeone DM, Lubman DM (2007) J Proteome Res 6:1126-1138
75. Gilmore JM, Washburn MP (2007) Nat Methods 4:480-481
76. Coon JJ, Ueberheide B, Syka JEP, Dryhurst DD, Ausio J, Shabanowitz J, Hunt DF (2005) Proc Natl Acad Sci USA 102:9463-9468
77. Garcia BA, Pesavento JJ, Mizzen CA, Kelleher NL (2007) Nat Methods 4:487-489
78. Lindner H, Sarg B, Hoertnagl B, Helliger W (1998) J Biol Chem 273:13324-13330
79. Sarg B, Green A, Soderkvist P, Helliger W, Rundquist I, Lindner HH (2005) FEBS J 272:3673-3683
80. Sarg B, Helliger W, Talasz H, Forg B, Lindner HH (2006) J Biol Chem 281:6573-6580
81. Sarg B, Helliger W, Talasz H, Koutzamani E, Lindner HH (2004) J Biol Chem 279:53458-53464
82. Pesavento JJ, Mizzen CA, Kelleher NL (2006) Anal Chem 78:4271-4280