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Volumn 14, Issue 5, 2011, Pages 307-327

Predicting the pKa of small molecules

Author keywords

pKa; Acid dissociation constant; QSPR; Quantitative structure property relationships.

Indexed keywords

ABSORPTION; ARTICLE; ARTIFICIAL NEURAL NETWORK; CHEMICAL PHENOMENA; COMPUTER PROGRAM; DATA ANALYSIS; DIFFUSION; DISSOCIATION CONSTANT; DRUG DEVELOPMENT; ELECTRONICS; EXCRETION; HYDROGEN BOND; IONIZATION; KERNEL METHOD; MACHINE LEARNING; MATHEMATICAL MODEL; METABOLISM; METHODOLOGY; PARTICLE SIZE; PKA; PRIORITY JOURNAL; PROTON TRANSPORT; QUANTITATIVE ANALYSIS; QUANTUM MECHANICS; SOLVATION; STATISTICAL ANALYSIS; STRUCTURE ANALYSIS; TAUTOMERIC SHIFT; THERMODYNAMICS; ARTIFICIAL INTELLIGENCE; CHEMICAL STRUCTURE; CHEMISTRY; PH; QUANTUM THEORY; REVIEW;

EID: 79955711312     PISSN: 13862073     EISSN: None     Source Type: Journal    
DOI: 10.2174/138620711795508403     Document Type: Article
Times cited : (57)

References (235)
  • 1
    • 73949145040 scopus 로고    scopus 로고
    • A universal approach for
    • a calculations: Are we there yet?
    • Ho, J.; Coote, M. A universal approach for continuum solvent pKa calculations: Are we there yet? Theor. Chim. Acta, 2010, 125(1-2), 3-21.
    • (2010) Theor. Chim. Acta , vol.125 , Issue.1-2 , pp. 3-21
    • Ho, J.1    Coote, M.2
  • 4
    • 72149101372 scopus 로고    scopus 로고
    • a Distribution of drugs: Application to drug discovery
    • Manallack, D. The pKa distribution of drugs: Application to drug discovery. Perspect. Med. Chem., 1, 25-38, 2007.
    • (2007) Perspect. Med. Chem. , vol.1 , pp. 25-38
    • Manallack, D.1
  • 5
    • 84906426888 scopus 로고    scopus 로고
    • Silico prediction of ionization
    • B. Testa; H. van de Waterbeemd, eds, Elsevier, Oxford, England
    • Fraczkiewicz, R. In silico prediction of ionization. In: B. Testa; H. van de Waterbeemd, eds., Comprehensive Medicinal Chemistry II, Elsevier, Oxford, England, 2006, vol. 5, pp. 603-626.
    • (2006) Comprehensive Medicinal Chemistry II , vol.5 , pp. 603-626
    • Fraczkiewicz, R.1
  • 6
    • 33846204780 scopus 로고    scopus 로고
    • a screening and prediction amenable for ADME profiling
    • DOI 10.1517/17425255.2.1.139
    • Wan, H.; Ulander, J. High-throughput pKa screening and prediction amenable for ADME profiling. Expert Opin. Drug Metab. Toxicol., 2006, 2(1), 139-155. (Pubitemid 46100733)
    • (2006) Expert Opinion on Drug Metabolism and Toxicology , vol.2 , Issue.1 , pp. 139-155
    • Wan, H.1    Ulander, J.2
  • 7
    • 84961980477 scopus 로고    scopus 로고
    • Quantum mechanical continuum solvation models
    • Tomasi, J.; Mennucci, B.; Cammi, R. Quantum mechanical continuum solvation models. Chem. Rev., 2005, 105(8), 2999-3094.
    • (2005) Chem. Rev. , vol.105 , Issue.8 , pp. 2999-3094
    • Tomasi, J.1    Mennucci, B.2    Cammi, R.3
  • 8
    • 1842653539 scopus 로고    scopus 로고
    • History of quantitative structure-activity relationships
    • D. Abrahams, ed. Wiley, chap. 1, 6th ed.
    • Selassie, C. History of quantitative structure-activity relationships. In: D. Abrahams, ed., Burger's Medicinal Chemistry and Drug Discovery, Wiley, 2003, vol. 1, chap. 1, pp. 1-48. 6th ed.
    • (2003) Burger's Medicinal Chemistry and Drug Discovery , vol.1 , pp. 1-48
    • Selassie, C.1
  • 9
    • 44249109151 scopus 로고
    • On the connection between chemical constitution and physiological action
    • Brown, A.C.; Fraser, T. On the connection between chemical constitution and physiological action. Trans. R. Soc. Edinburgh, 1868, 25, 1-53.
    • (1868) Trans. R. Soc. Edinburgh , vol.25 , pp. 1-53
    • Brown, A.C.1    Fraser, T.2
  • 10
    • 33747866218 scopus 로고
    • Some relations between reaction rates and equilibrium constants
    • Hammett, L. Some relations between reaction rates and equilibrium constants. Chem. Rev., 1935, 17(1), 125-136.
    • (1935) Chem. Rev. , vol.17 , Issue.1 , pp. 125-136
    • Hammett, L.1
  • 11
    • 0002801544 scopus 로고
    • The effect of structure upon the reactions of organic compounds. Benzene derivatives
    • Hammett, L. The effect of structure upon the reactions of organic compounds. Benzene derivatives. J. Am. Chem. Soc., 1937, 59(1), 96-103.
    • (1937) J. Am. Chem. Soc. , vol.59 , Issue.1 , pp. 96-103
    • Hammett, L.1
  • 12
    • 33947453229 scopus 로고
    • Polar and steric substituent constants for aliphatic and obenzoate groups from rates of esterification and hydrolysis of esters
    • Taft, R. Polar and steric substituent constants for aliphatic and obenzoate groups from rates of esterification and hydrolysis of esters. J. Am. Chem. Soc., 1952, 74(12), 3120-3128.
    • (1952) J. Am. Chem. Soc. , vol.74 , Issue.12 , pp. 3120-3128
    • Taft, R.1
  • 13
    • 34447521097 scopus 로고
    • Correlation of biological activity of phenoxyacetic acids with Hammett substituent constants and partition coeffcients
    • Hansch, C.; Maloney, P.; Fujita, T. Correlation of biological activity of phenoxyacetic acids with Hammett substituent constants and partition coeffcients. Nature, 1962, 194(4824), 178-180.
    • (1962) Nature , vol.194 , Issue.4824 , pp. 178-180
    • Hansch, C.1    Maloney, P.2    Fujita, T.3
  • 14
    • 33749000228 scopus 로고
    • A new substituent constant, π, derived from partition coefficients
    • Fujita, T.; Iwasa, J.; Hansch, C. A new substituent constant, π, derived from partition coeffcients. J. Am. Chem. Soc., 1964, 86(23), 5175-5180.
    • (1964) J. Am. Chem. Soc. , vol.86 , Issue.23 , pp. 5175-5180
    • Fujita, T.1    Iwasa, J.2    Hansch, C.3
  • 15
    • 33947485697 scopus 로고
    • A mathematical contribution to structureactivity studies
    • Free, S.; Wilson, J. A mathematical contribution to structureactivity studies. J. Med. Chem., 1964, 7(4), 395-399.
    • (1964) J. Med. Chem. , vol.7 , Issue.4 , pp. 395-399
    • Free, S.1    Wilson, J.2
  • 16
    • 0023780482 scopus 로고
    • Free Wilson analysis. Theory, applications and its relationship to Hansch analysis
    • Kubinyi, H. Free Wilson analysis. Theory, applications and its relationship to Hansch analysis. Quant. Struct. Act. Rel., 1988, 7(3), 121-133.
    • (1988) Quant. Struct. Act. Rel. , vol.7 , Issue.3 , pp. 121-133
    • Kubinyi, H.1
  • 17
    • 0015009844 scopus 로고
    • Structure-activity study of phenethylamines as substrates of biosynthetic enzymes of sympathetic transmitters
    • Fujita, T.; Ban, T. Structure-activity study of phenethylamines as substrates of biosynthetic enzymes of sympathetic transmitters. J. Med. Chem., 1971, 14(2), 148-152.
    • (1971) J. Med. Chem. , vol.14 , Issue.2 , pp. 148-152
    • Fujita, T.1    Ban, T.2
  • 18
    • 0011115467 scopus 로고
    • Studies in chemotherapy. VII. A theory of the relation of structure to activity of sulfanilamide type compounds
    • Bell, P.; Roblin, R.O., Jr. Studies in chemotherapy. VII. A theory of the relation of structure to activity of sulfanilamide type compounds. J. Am. Chem. Soc., 1942, 64(12), 2905-2917.
    • (1942) J. Am. Chem. Soc. , vol.64 , Issue.12 , pp. 2905-2917
    • Bell, P.1    Roblin Jr., R.O.2
  • 19
    • 0001521730 scopus 로고
    • The influence of chemical constitution on antibacterial activity II. A general survey of the acridine series
    • Albert, A.; Rubbo, S.; Goldacre, R.; Darcy, M.; Stove, J. The influence of chemical constitution on antibacterial activity II. A general survey of the acridine series. Br. J. Exp. Pathol., 1945, 26, 160-192.
    • (1945) Br. J. Exp. Pathol. , vol.26 , pp. 160-192
    • Albert, A.1    Rubbo, S.2    Goldacre, R.3    Darcy, M.4    Stove, J.5
  • 21
    • 33645779043 scopus 로고    scopus 로고
    • The chemical potential
    • DOI 10.1007/s10955-005-8067-x
    • Kaplan, T. The chemical potential. J. Stat. Phys., 2006, 122(6), 1237-1260. (Pubitemid 43554058)
    • (2006) Journal of Statistical Physics , vol.122 , Issue.6 , pp. 1237-1260
    • Kaplan, T.A.1
  • 22
    • 33244463255 scopus 로고    scopus 로고
    • Chemical potential - A quantity in search of recognition
    • DOI 10.1088/0143-0807/27/2/018, PII S0143080706013614
    • Job, G.; Herrmann, F. Chemical potential - a quantity in search of recognition. Eur. J. Phys., 2006, 27(2), 353-371. (Pubitemid 43278179)
    • (2006) European Journal of Physics , vol.27 , Issue.2 , pp. 353-371
    • Job, G.1    Herrmann, F.2
  • 24
    • 84949329751 scopus 로고
    • Osmotic coeffcients and mean activity coeffcients of uni-univalent electrolytes in water at 25 C
    • Hamer, W.; Wu, Y.C. Osmotic coeffcients and mean activity coeffcients of uni-univalent electrolytes in water at 25 C. J. Phys. Chem. Ref. Data, 1972, 1(4), 1047-1100.
    • (1972) J. Phys. Chem. Ref. Data , vol.1 , Issue.4 , pp. 1047-1100
    • Hamer, W.1    Wu, Y.C.2
  • 25
    • 0001158366 scopus 로고
    • Die Berechnung der Wasserstoffzahl des Blutes aus der freien und gebundenen Kohlensäure desselben, und dieSauerstoffbindung des Blutes als Funktion der Wasserstoffzahl
    • Hasselbalch, K.A. Die Berechnung der Wasserstoffzahl des Blutes aus der freien und gebundenen Kohlensäure desselben, und dieSauerstoffbindung des Blutes als Funktion der Wasserstoffzahl. Biochemische Zeitschrift, 1916, 78, 112-144.
    • (1916) Biochemische Zeitschrift , vol.78 , pp. 112-144
    • Hasselbalch, K.A.1
  • 26
    • 0035508160 scopus 로고    scopus 로고
    • The Henderson-Hasselbalch equation: Its history and limitations
    • Po, H.; Senozan, N. The Henderson-Hasselbalch equation: Its history and limitations. J. Chem. Educ., 2001, 78(11), 1499-1503. (Pubitemid 33607487)
    • (2001) Journal of Chemical Education , vol.78 , Issue.11 , pp. 1499-1503
    • Po, H.N.1    Senozan, N.M.2
  • 27
    • 0013144768 scopus 로고    scopus 로고
    • The Henderson approximation and the mass action law of Guldberg and Waage
    • de Levie, R. The Henderson approximation and the mass action law of Guldberg and Waage. Chem. Educat., 2002, 7(3), 132-135.
    • (2002) Chem. Educat. , vol.7 , Issue.3 , pp. 132-135
    • De Levie, R.1
  • 28
    • 0034350517 scopus 로고    scopus 로고
    • Protonation microequilibrium treatment of polybasic compounds with any possible symmetry
    • Szakács, Z.; Noszál, B. Protonation microequilibrium treatment of polybasic compounds with any possible symmetry. J. Math. Chem., 1999, 26, 139-155.
    • (1999) J. Math. Chem. , vol.26 , pp. 139-155
    • Szakács, Z.1    Noszál, B.2
  • 29
    • 0037421933 scopus 로고    scopus 로고
    • Relations between protonation constants and titration curves in polyprotic acids: A critical view
    • Ullmann, M. Relations between protonation constants and titration curves in polyprotic acids: A critical view. J. Phys. Chem. B, 2003,107(5), 1263-1271.
    • (2003) J. Phys. Chem. B , vol.107 , Issue.5 , pp. 1263-1271
    • Ullmann, M.1
  • 30
    • 67349226351 scopus 로고    scopus 로고
    • Triprotic acid-base microequilibria and pharmacokinetic sequelae of cetirizine
    • Marosi, A.; Kovács, Z.; Béni, S.; Kökösi, J.; Noszál, B. Triprotic acid-base microequilibria and pharmacokinetic sequelae of cetirizine. Eur. J. Pharmaceut. Sci., 2009, 37(3-4), 321-328.
    • (2009) Eur. J. Pharmaceut. Sci. , vol.37 , Issue.3-4 , pp. 321-328
    • Marosi, A.1    Kovács, Z.2    Béni, S.3    Kökösi, J.4    Noszál, B.5
  • 35
    • 29144491670 scopus 로고    scopus 로고
    • a
    • Pliego J., Jr. Reply to comment on: Thermodynamic cycles and the calculation of pKa. Chem. Phys. Lett., 2003, 381(1-2), 246-247.
    • (2003) Chem. Phys. Lett. , vol.381 , Issue.1-2 , pp. 246-247
    • Pliego, J.1
  • 36
    • 0003516749 scopus 로고    scopus 로고
    • Oxford University Press, Oxford, England, 9th ed
    • Atkins, P.; de Paula, J. Physical Chemistry. Oxford University Press, Oxford, England, 2010, 9th ed.
    • (2010) Physical Chemistry
    • Atkins, P.1    De Paula, J.2
  • 37
    • 0036013740 scopus 로고    scopus 로고
    • Gibbs energy of solvation of organic ions in aqueous and dimethyl sulfoxide solutions
    • Pliego J., Jr.; Riveros, J. Gibbs energy of solvation of organic ions in aqueous and dimethyl sulfoxide solutions. Phys. Chem. Chem. Phys., 2002, 4(9), 1622-1627.
    • (2002) Phys. Chem. Chem. Phys. , vol.4 , Issue.9 , pp. 1622-1627
    • Pliego Jr., J.1    Riveros, J.2
  • 38
    • 33751136719 scopus 로고
    • Free energy calculations in molecular biophysics
    • Reynolds, C.A.; King, P.M.; Richards, W.G. Free energy calculations in molecular biophysics. Mol. Phys., 1992, 76(2), 251-275.
    • (1992) Mol. Phys. , vol.76 , Issue.2 , pp. 251-275
    • Reynolds, C.A.1    King, P.M.2    Richards, W.G.3
  • 39
    • 7044239742 scopus 로고
    • Free energy calculations: Applications to chemical and biochemical phenomena
    • Kollman, P. Free energy calculations: Applications to chemical and biochemical phenomena. Chem. Rev., 1993, 93(7), 2395-2417.
    • (1993) Chem. Rev. , vol.93 , Issue.7 , pp. 2395-2417
    • Kollman, P.1
  • 40
    • 0347927466 scopus 로고
    • Free energies of hydration for organic molecules from Monte Carlo simulations
    • Jorgensen, W.L.; Tirado-Rives, J. Free energies of hydration for organic molecules from Monte Carlo simulations. Perspect. Drug Discov. Des., 1995, 3(1), 123-138.
    • (1995) Perspect. Drug Discov. Des. , vol.3 , Issue.1 , pp. 123-138
    • Jorgensen, W.L.1    Tirado-Rives, J.2
  • 41
    • 67650495212 scopus 로고    scopus 로고
    • λ-Dynamics free energy simulation methods
    • Knight, J.L.; Brooks, C.L., III. λ-dynamics free energy simulation methods. J. Comput. Chem., 2009, 30(11), 1692-1700.
    • (2009) J. Comput. Chem. , vol.30 , Issue.11 , pp. 1692-1700
    • Knight, J.L.1    Brooks III, C.L.2
  • 42
    • 11744256643 scopus 로고
    • Molecular interactions in solution: An overview of methods based on continuous distributions of the solvent
    • Tomasi, J.; Persico, M. Molecular interactions in solution: An overview of methods based on continuous distributions of the solvent. Chem. Rev., 1994, 94(7), 2027-2094. (Pubitemid 124000195)
    • (1994) Chemical Reviews , vol.94 , Issue.7 , pp. 2027-2094
    • Tomasi, J.1    Persico, M.2
  • 43
    • 0032968133 scopus 로고    scopus 로고
    • Implicit solvent models
    • DOI 10.1016/S0301-4622(98)00226-9, PII S0301462298002269
    • Roux, B.; Simonson, T. Implicit solvent models. Biophys. Chem., 1999, 78(1-2), 1-20. (Pubitemid 29206654)
    • (1999) Biophysical Chemistry , vol.78 , Issue.1-2 , pp. 1-20
    • Roux, B.1    Simonson, T.2
  • 44
    • 0033654297 scopus 로고    scopus 로고
    • Generalized Born models of macromolecular solvation effects
    • Bashford, D.; Case, D.A. Generalized Born models of macromolecular solvation effects. Annu. Rev. Phys. Chem., 2000, 51, 129-152.
    • (2000) Annu. Rev. Phys. Chem. , vol.51 , pp. 129-152
    • Bashford, D.1    Case, D.A.2
  • 45
    • 34047240165 scopus 로고    scopus 로고
    • A generalized born implicit-membrane representation compared to experimental insertion free energies
    • DOI 10.1529/biophysj.106.081810
    • Ulmschneider, M.B.; Ulmschneider, J.P.; Sansom, M.S.; Nola, A.D. A generalized Born implicit-membrane representation compared to experimental insertion free energies. Biophys. J., 2007, 92(7), 2338-2349. (Pubitemid 46536417)
    • (2007) Biophysical Journal , vol.92 , Issue.7 , pp. 2338-2349
    • Ulmschneider, M.B.1    Ulmschneider, J.P.2    Sansom, M.S.P.3    Di Nolay, A.4
  • 46
    • 0000523716 scopus 로고
    • Recent progress in the statistical mechanics of interaction site fluids
    • I. Prigogine; S.R. Rice, Eds., Wiley, New York
    • Manson, P.A.; Morriss, G.P. Recent progress in the statistical mechanics of interaction site fluids. In: I. Prigogine; S.R. Rice, Eds., Advances in Chemical Physics, Wiley, New York, 1990, vol. 77, pp. 451-550.
    • (1990) Advances in Chemical Physics , vol.77 , pp. 451-550
    • Manson, P.A.1    Morriss, G.P.2
  • 49
    • 77955686498 scopus 로고    scopus 로고
    • Accurate calculations of the hydration free energies of druglike molecules using the reference interaction site model
    • Palmer, D.S.; Sergiievskyi, V.P.; Jensen, F.; Fedorov, M.V. Accurate calculations of the hydration free energies of druglike molecules using the reference interaction site model. J. Chem. Phys., 2010, 133(4), 044104.
    • (2010) J. Chem. Phys. , vol.133 , Issue.4 , pp. 044104
    • Palmer, D.S.1    Sergiievskyi, V.P.2    Jensen, F.3    Fedorov, M.V.4
  • 50
    • 65249135879 scopus 로고    scopus 로고
    • Performance of SM6, SM8, and SMD on the SAMPL1 test set for the prediction of smallmolecule solvation free energies
    • Marenich, A.V.; Cramer, C.J.; Truhlar, D.G. Performance of SM6, SM8, and SMD on the SAMPL1 test set for the prediction of smallmolecule solvation free energies. J. Phys. Chem. B, 2009, 113(14), 4538-4543.
    • (2009) J. Phys. Chem. B , vol.113 , Issue.14 , pp. 4538-4543
    • Marenich, A.V.1    Cramer, C.J.2    Truhlar, D.G.3
  • 51
    • 65249087319 scopus 로고    scopus 로고
    • Prediction of the free energy of hydration of a challenging set of pesticide-like compounds
    • Klamt, A.; Eckert, F.; Diedenhofen, M. Prediction of the free energy of hydration of a challenging set of pesticide-like compounds. J. Phys. Chem. B, 2009, 113(14), 4508-4510.
    • (2009) J. Phys. Chem. B , vol.113 , Issue.14 , pp. 4508-4510
    • Klamt, A.1    Eckert, F.2    Diedenhofen, M.3
  • 52
    • 65249151871 scopus 로고    scopus 로고
    • Prediction of SAMPL-1 hydration free energies using a
    • continuum electrostaticsdispersion model
    • Sulea, T.; Wanapun, D.; Dennis, S.; Purisima, E.O. Prediction of SAMPL-1 hydration free energies using a continuum electrostaticsdispersion model. J. Phys. Chem. B, 2009, 113(14), 4511-4520.
    • (2009) J. Phys. Chem. B , vol.113 , Issue.14 , pp. 4511-4520
    • Sulea, T.1    Wanapun, D.2    Dennis, S.3    Purisima, E.O.4
  • 57
    • 62849112750 scopus 로고    scopus 로고
    • Calculation of molecular lipophilicity: State-of-The-art and comparison of log p methods on more than 96,000 compounds
    • Mannhold, R.; Poda, G.I.; Ostermann, C.; Tetko, I.V. Calculation of molecular lipophilicity: State-of-the-art and comparison of log p methods on more than 96,000 compounds. J. Pharm. Sci., 2009, 98(3), 861-893.
    • (2009) J. Pharm. Sci. , vol.98 , Issue.3 , pp. 861-893
    • Mannhold, R.1    Poda, G.I.2    Ostermann, C.3    Tetko, I.V.4
  • 58
    • 13244298996 scopus 로고    scopus 로고
    • Physicochemical profiling: Overview of the screens
    • DOI 10.1016/j.ddtec.2004.08.011, PII S1740674904000216
    • Kerns, E.H.; Di, L. Physicochemical profiling: Overview of the screens. Drug Discov. Today Tech., 2004, 1(4), 343-348. (Pubitemid 40186336)
    • (2004) Drug Discovery Today: Technologies , vol.1 , Issue.4 , pp. 343-348
    • Kerns, E.H.1    Di, L.2
  • 59
    • 4344591349 scopus 로고    scopus 로고
    • Bench-to-bedside review: A brief history of clinical acid-base
    • DOI 10.1186/cc2861
    • Story, D.A. Bench-to-bedside review: A brief history of clinical acidbase. Crit. Care, 2004, 8(4), 253-258, 2004. (Pubitemid 39144715)
    • (2004) Critical Care , vol.8 , Issue.4 , pp. 253-258
    • Story, D.A.1
  • 60
    • 0042011188 scopus 로고    scopus 로고
    • Calculating pKa values in enzyme active sites
    • DOI 10.1110/ps.03114903
    • Nielsen, J.E.; McCammon, J.A. Calculating pKa values in enzyme active sites. Protein Sci., 2003, 12(9), 1894-1901. (Pubitemid 37022812)
    • (2003) Protein Science , vol.12 , Issue.9 , pp. 1894-1901
    • Nielsen, J.E.1    McCammon, J.A.2
  • 61
    • 0027420398 scopus 로고
    • Understanding the rates of certain enzyme-catalyzed reactions: Proton abstraction from carbon acids, acyl-transfer reactions, and displacement reactions of phosphodiesters
    • DOI 10.1021/bi00096a001
    • Gerlt, J.A.; Gassman, P.G. Understanding the rates of certain enzyme-catalyzed reactions: Proton abstraction from carbon acids, acyl transfer reactions, and displacement reactions of phosphodiesters. Biochemistry, 1993, 32(45), 11943-11952. (Pubitemid 23353629)
    • (1993) Biochemistry , vol.32 , Issue.45 , pp. 11943-11952
    • Gerlt, J.A.1    Gassman, P.G.2
  • 62
    • 0034860788 scopus 로고    scopus 로고
    • Substrate dehydrogenation by flavoproteins
    • DOI 10.1021/ar0000511
    • Fitzpatrick, P.F. Substrate dehydrogenation by flavoproteins. Accounts Chem. Res., 2001, 34(4), 299-307. (Pubitemid 32816467)
    • (2001) Accounts of Chemical Research , vol.34 , Issue.4 , pp. 299-307
    • Fitzpatrick, P.F.1
  • 64
    • 9744235147 scopus 로고    scopus 로고
    • Reaction specificity in pyridoxal phosphate enzymes
    • DOI 10.1016/j.abb.2004.09.037, PII S0003986104005338
    • Toney, M.D. Reaction specificity in pyridoxal phosphate enzymes. Arch. Biochem. Biophys., 2005, 433(1), 279-287. (Pubitemid 39586598)
    • (2005) Archives of Biochemistry and Biophysics , vol.433 , Issue.1 , pp. 279-287
    • Toney, M.D.1
  • 65
    • 42449146125 scopus 로고    scopus 로고
    • Electrophilic coordination catalysis: A summary of previous thought and a new angle of analysis
    • Houk, R.J.; Monzingo, A.; Anslyn, E.V. Electrophilic coordination catalysis: A summary of previous thought and a new angle of analysis. Accounts Chem. Res., 2008, 41(3), 401-410.
    • (2008) Accounts Chem. Res. , vol.41 , Issue.3 , pp. 401-410
    • Houk, R.J.1    Monzingo, A.2    Anslyn, E.V.3
  • 66
    • 0141958109 scopus 로고    scopus 로고
    • In silico prediction of blood-brain barrier permeation
    • DOI 10.1016/S1359-6446(03)02827-7, PII S1359644603028277
    • Clark, D.E. In silico prediction of blood-brain barrier permeation. Drug Discov. Today, 2003, 8(20), 927-933, 2003. (Pubitemid 37230012)
    • (2003) Drug Discovery Today , vol.8 , Issue.20 , pp. 927-933
    • Clark, D.E.1
  • 67
    • 0034740665 scopus 로고    scopus 로고
    • a and distribution coefficient in the metabolism of fluorinated propranolol derivatives. Preparation, identification of metabolite regioisomers, and metabolism by CYP2D6
    • Upthagrove, A.; Nelson, W. Importance of amine pKa and distribution coeffcient in the metabolism of fluorinated propranolol derivatives. Preparation, identification of metabolite regioisomers, and metabolism by CYP2D6. Drug Metab. Dispos., 2001, 29(11), 1377-1388. (Pubitemid 33000683)
    • (2001) Drug Metabolism and Disposition , vol.29 , Issue.11 , pp. 1377-1388
    • Upthagrove, A.L.1    Nelson, W.L.2
  • 68
    • 84961976172 scopus 로고    scopus 로고
    • a for cocaine, nicotine, neurotransmitters, and anilines in aqueous solution
    • DOI 10.1021/jp072917r
    • Lu, H.; Chen, X.; Zhan, C.G.G. First-principles calculation of pKa for cocaine, nicotine, neurotransmitters, and anilines in aqueous solution. J. Phys. Chem. B, 2007, 111(35), 10599-10605. (Pubitemid 47447598)
    • (2007) Journal of Physical Chemistry B , vol.111 , Issue.35 , pp. 10599-10605
    • Lu, H.1    Chen, X.2    Zhan, C.-G.3
  • 69
    • 34247255912 scopus 로고    scopus 로고
    • a for druglike compounds using semiempirical and information-based descriptors
    • DOI 10.1021/ci600285n
    • Jelfs, S.; Ertl, P.; Selzer, P. Estimation of pKa for druglike compounds using semiempirical and information-based descriptors. J. Chem. Inf. Model., 2007, 47(2), 450-459. (Pubitemid 46615947)
    • (2007) Journal of Chemical Information and Modeling , vol.47 , Issue.2 , pp. 450-459
    • Jelfs, S.1    Ertl, P.2    Selzer, P.3
  • 72
    • 79955742808 scopus 로고    scopus 로고
    • PKa values for some drugs and miscellaneous organic acids and bases 6th ed
    • T. Lemke; D. Williams; V. Roche; W. Zito, eds., Lippincott Williams & Wilkins
    • Williams, D. pKa values for some drugs and miscellaneous organic acids and bases, 6th ed. In: T. Lemke; D. Williams; V. Roche; W. Zito, eds., Foye's Principles of Medicinal Chemistry, Lippincott Williams & Wilkins, 2008, pp. 1343-1353.
    • (2008) Foye's Principles of Medicinal Chemistry , pp. 1343-1353
    • Williams, D.1
  • 73
    • 0343379841 scopus 로고
    • Nomenclature for liquid-liquid distribution (solvent extraction)
    • Rice, N.; Irving, H.; Leonard, M. Nomenclature for liquid-liquid distribution (solvent extraction). Pure Appl. Chem., 1993, 65(11), 2373-2396.
    • (1993) Pure Appl. Chem. , vol.65 , Issue.11 , pp. 2373-2396
    • Rice, N.1    Irving, H.2    Leonard, M.3
  • 74
    • 0019959614 scopus 로고
    • Influence of ionization and ion-pair formation on lipophilicity of some 4-hydroxycoumarin derivatives in the octanol-water system
    • DOI 10.1016/0378-5173(82)90122-3
    • van der Giesen, W.F.; Janssen, L.H.M. Influence of ionization and ion-pair formation on lipophilicity of some 4-hydroxycoumarin derivatives in the octanol-water system. Int. J. Pharm., 1982, 12(2-3), 231-249. (Pubitemid 12037346)
    • (1982) International Journal of Pharmaceutics , vol.12 , Issue.2-3 , pp. 231-249
    • Van Der Giesen, W.F.1    Janssen, L.H.M.2
  • 75
    • 75249088152 scopus 로고    scopus 로고
    • a values 1
    • Zhang, S.; Baker, J.; Pulay, P. A reliable and effcient first principles-based method for predicting pKa values. 1. Methodology. J. Phys. Chem. A, 2010, 114(1), 425-431.
    • (2010) Methodology. J. Phys. Chem. A , vol.114 , Issue.1 , pp. 425-431
    • Zhang, S.1    Baker, J.2    Pulay, P.3
  • 76
    • 0000812233 scopus 로고    scopus 로고
    • Ecotoxic modes of action of chemical substances
    • Schüürmann, G.; Markert, B., Eds., Wiley/Spektrum, New York/Heidelberg, chap. 22
    • Schüürmann, G. Ecotoxic modes of action of chemical substances. In: Schüürmann, G.; Markert, B., Eds.; Ecotoxicology. Ecological Fundamentals, Chemical Exposure, and Biological Effects, Wiley/Spektrum, New York/Heidelberg, 1998, chap. 22, pp. 665-749.
    • (1998) Ecotoxicology. Ecological Fundamentals, Chemical Exposure, and Biological Effects , pp. 665-749
    • Schüürmann, G.1
  • 77
    • 0025046339 scopus 로고
    • Uncouplers of oxidative phosphorylation
    • Terada, H. Uncouplers of oxidative phosphorylation. Environ. Health Perspect., 1990, 87, 213-218. (Pubitemid 20316919)
    • (1990) Environmental Health Perspectives , vol.87 , pp. 213-218
    • Terada, H.1
  • 78
    • 0029825008 scopus 로고    scopus 로고
    • Structure-activity relationships for chloro- and nitrophenol toxicity in the pollen tube growth test
    • DOI 10.1897/1551-5028(1996)015<1702:SARFCA>2.3.CO;2
    • Schüürmann, G.; Somashekar, R.K.; Kristen, U. Structure-activity relationships for chloro- and nitrophenol toxicity in the pollen tube growth test. Environ. Toxicol. Chem., 1996, 15(10), 1702-1708. (Pubitemid 26342330)
    • (1996) Environmental Toxicology and Chemistry , vol.15 , Issue.10 , pp. 1702-1708
    • Schuurmann, G.1    Somashekar, R.K.2    Kristen, U.3
  • 79
    • 0030613345 scopus 로고    scopus 로고
    • Multivariate mode-of-action analysis of acute toxicity of phenols
    • Schüürmann, G.; Segner, H.; Jung, K. Multivariate mode-of-action analysis of acute toxicity of phenols. Aquat. Toxicol., 1997, 38(4), 277-296.
    • (1997) Aquat. Toxicol. , vol.38 , Issue.4 , pp. 277-296
    • Schüürmann, G.1    Segner, H.2    Jung, K.3
  • 80
    • 54949132575 scopus 로고    scopus 로고
    • a for benzoic acids in different solvents
    • Jover, J.; Bosque, R.; Sales, J. QSPR prediction of pKa for benzoic acids in different solvents. QSAR Comb. Sci., 2008, 27(5), 563-581.
    • (2008) QSAR Comb. Sci. , vol.27 , Issue.5 , pp. 563-581
    • Jover, J.1    Bosque, R.2    Sales, J.3
  • 81
    • 0000281034 scopus 로고    scopus 로고
    • Hammett-Taft and Drago models in the prediction of acidity constant values of neutral and cationic acids in methanol
    • Bosch, E.; Rived, F.; Rosés, M.; Sales, J. HammettTaft and Drago models in the prediction of acidity constant values of neutral and cationic acids in methanol. J. Chem. Soc. Perkin Trans., 1999, 2, 1953-1958. (Pubitemid 129547790)
    • (1999) Journal of the Chemical Society. Perkin Transactions 2 , Issue.9 , pp. 1953-1958
    • Bosch, E.1    Rived, F.2    Roses, M.3    Sales, J.4
  • 87
    • 0002095396 scopus 로고
    • Ionization constants (of heterocyclic substances)
    • A.R. Katritzky, Ed., Academic Press
    • Albert, A. Ionization constants (of heterocyclic substances). In: A.R. Katritzky, Ed., Physical Methods in Heterocyclic Chemistry, Academic Press, 1963, vol. 1.
    • (1963) Physical Methods in Heterocyclic Chemistry , vol.1
    • Albert, A.1
  • 99
    • 0242623100 scopus 로고
    • vol. 6 of Comprehensive Medicinal Chemistry: The Rational Design, Mechanistic Study & Therapeutic Applications of Chemical Compounds. Pergamon Press
    • Drayton, C., Ed. Cumulative Subject Index & Drug Compendium, vol. 6 of Comprehensive Medicinal Chemistry: The Rational Design, Mechanistic Study & Therapeutic Applications of Chemical Compounds. Pergamon Press, 1990.
    • (1990) Cumulative Subject Index & Drug Compendium
    • Drayton, C.1
  • 103
    • 70449345550 scopus 로고    scopus 로고
    • 14th ed. Merck Publishing
    • O'Neill, M., Ed. The Merck Index. 14th ed. Merck Publishing, 2006.
    • (2006) The Merck Index
    • O'Neill, M.1
  • 104
    • 36048986392 scopus 로고    scopus 로고
    • vol. 33 of Profiles of Drug Substances, Excipients, and Related Methodology, Elsevier
    • Prankerd, R.J. Critical Compilation of pKa Values for Pharmaceutical Substances, vol. 33 of Profiles of Drug Substances, Excipients, and Related Methodology.Elsevier, 2007.
    • (2007) a Values for Pharmaceutical Substances
    • Prankerd, R.J.1
  • 105
    • 52449106452 scopus 로고    scopus 로고
    • a values) of organic compounds by multiplexed capillary electrophoresis using aqueous and cosolvent buffers
    • Shalaeva, M.; Kenseth, J.; Lombardo, F.; Bastin, A. Measurement of dissociation constants (pKa values) of organic compounds by multiplexed capillary electrophoresis using aqueous and cosolvent buffers. J. Pharm. Sci., 2008, 97(7), , 2581-2606.
    • (2008) J. Pharm. Sci. , vol.97 , Issue.7 , pp. 2581-2606
    • Shalaeva, M.1    Kenseth, J.2    Lombardo, F.3    Bastin, A.4
  • 108
    • 0030219011 scopus 로고    scopus 로고
    • Interlaboratory study of log P determination by shake-flask and potentiometric methods
    • DOI 10.1016/0731-7085(96)01773-6
    • Takács-Novák, K.; Avdeef, A. Interlaboratory study of log p determination by shake-flask and potentiometric methods. J. Pharmaceut. Biomed. Anal., 1996, 14(11), 1405-1413. (Pubitemid 26279286)
    • (1996) Journal of Pharmaceutical and Biomedical Analysis , vol.14 , Issue.11 , pp. 1405-1413
    • Takacs-Novak, K.1    Avdeef, A.2
  • 109
    • 73349118457 scopus 로고    scopus 로고
    • a values of pharmaceutical substances
    • Liao, C.; Nicklaus, M. Comparison of nine programs predicting pKa values of pharmaceutical substances. J. Chem. Inf. Model., 2009, 49(12), 2801-2812.
    • (2009) J. Chem. Inf. Model. , vol.49 , Issue.12 , pp. 2801-2812
    • Liao, C.1    Nicklaus, M.2
  • 110
    • 0000189651 scopus 로고
    • Density-functional thermochemistry. III. The role of exact exchange
    • Becke, A. Density-functional thermochemistry. III. The role of exact exchange. J. Chem. Phys., 1993, 98(7), 5648-5652.
    • (1993) J. Chem. Phys. , vol.98 , Issue.7 , pp. 5648-5652
    • Becke, A.1
  • 111
    • 0345491105 scopus 로고
    • Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density
    • Lee, C.; Yang, W.; Parr, R. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys. Rev. B, 1988, 37(2), 785-789.
    • (1988) Phys. Rev. B , vol.37 , Issue.2 , pp. 785-789
    • Lee, C.1    Yang, W.2    Parr, R.3
  • 114
    • 84961980743 scopus 로고
    • COSMO: A new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient
    • Klamt, A.; Schüürmann, G. COSMO: A new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient. J. Chem. Soc. Perkin Trans., 1993, 2, 799-805.
    • (1993) J. Chem. Soc. Perkin Trans. , vol.2 , pp. 799-805
    • Klamt, A.1    Schüürmann, G.2
  • 118
    • 0000235295 scopus 로고    scopus 로고
    • Assessment of a new local exchange functional OPTX
    • DOI 10.1016/S0009-2614(01)00581-4, PII S0009261401005814
    • Hoe, W.M.; Cohen, A.; Handy, N. Assessment of a new local exchange functional OPTX. Chem. Phys. Lett., 2001, 341(3-4), 319-328. (Pubitemid 33628235)
    • (2001) Chemical Physics Letters , vol.341 , Issue.3-4 , pp. 319-328
    • Hoe, W.-M.1    Cohen, A.J.2    Handy, N.C.3
  • 120
    • 0000338194 scopus 로고    scopus 로고
    • Quantum Molecular Similarity. 1. BCP Space
    • Popelier, P.L. Quantum molecular similarity. 1. BCP space. J. Phys. Chem. A, 1999, 103(15), 2883-2890. (Pubitemid 129570859)
    • (1999) Journal of Physical Chemistry A , vol.103 , Issue.15 , pp. 2883-2890
    • Popelier, P.L.A.1
  • 121
    • 0035353656 scopus 로고    scopus 로고
    • Quantum molecular similarity. 3. QTMS descriptors
    • O'Brien, S.E.; Popelier, P.L. Quantum molecular similarity. 3. QTMS descriptors. J. Chem. Inform. Comput. Sci., 2001, 41(3), 764-775.
    • (2001) J. Chem. Inform. Comput. Sci. , vol.41 , Issue.3 , pp. 764-775
    • O'brien, S.E.1    Popelier, P.L.2
  • 123
    • 0037188453 scopus 로고    scopus 로고
    • Radial basis function neural network-based QSPR for the prediction of critical temperature
    • DOI 10.1016/S0169-7439(02)00017-5, PII S0169743902000175
    • Yao, X.; Wang, Y.; Zhang, X.; Zhang, R.; Liu, M.; Hu, Z.; Fan, B. Radial basis function neural network-based QSPR for the prediction of critical temperature. Chemometr. Intell. Lab. Syst., 2002, 62(2), 217-225. (Pubitemid 34497105)
    • (2002) Chemometrics and Intelligent Laboratory Systems , vol.62 , Issue.2 , pp. 217-225
    • Yao, X.1    Wang, Y.2    Zhang, X.3    Zhang, R.4    Liu, M.5    Hu, Z.6    Fan, B.7
  • 124
    • 33745597056 scopus 로고    scopus 로고
    • RMI: A reparameterization of AM1 for H, C, N, O, P, S, F, Cl, Br, and i
    • Rocha, G.B.; Freire, R.O.; Simas, A.M.; Stewart, J.J. RM1: A reparameterization of AM1 for H, C, N, O, P, S, F, Cl, Br, and I. J. Comput. Chem., 2006, 27(10), 1101-1111.
    • (2006) J. Comput. Chem. , vol.27 , Issue.10 , pp. 1101-1111
    • Rocha, G.B.1    Freire, R.O.2    Simas, A.M.3    Stewart, J.J.4
  • 125
    • 33748905333 scopus 로고    scopus 로고
    • Model for aqueous solvation based on class IV atomic charges and first solvation shell effects
    • Chambers, C.C.; Hawkins, G.D.; Cramer, C.J.; Truhlar, D.G. Model for aqueous solvation based on class IV atomic charges and first solvation shell effects. J. Phys. Chem., 1996, 100(40), 16385-16398. (Pubitemid 126799389)
    • (1996) Journal of Physical Chemistry , vol.100 , Issue.40 , pp. 16385-16398
    • Chambers, C.C.1    Hawkins, G.D.2    Cramer, C.J.3    Truhlar, D.G.4
  • 126
    • 0023965741 scopus 로고
    • SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules
    • Weininger, D. SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules. J. Chem. Inform. Comput. Sci., 1988, 28(1), 31-36. (Pubitemid 18574254)
    • (1988) Journal of Chemical Information and Computer Sciences , vol.28 , Issue.1 , pp. 31-36
    • Weininger, D.1
  • 128
    • 34848824629 scopus 로고    scopus 로고
    • Applications of support vector machines in chemistry
    • K. Lipkowitz; T. Cundari eds, Wiley, Hoboken, chap. 6
    • Ivanciuc, O. Applications of support vector machines in chemistry. In: K. Lipkowitz; T. Cundari, eds., Reviews in Computational Chemistry, Wiley, Hoboken, 2007, vol. 23, chap. 6, pp. 291-400.
    • (2007) Reviews in Computational Chemistry , vol.23 , pp. 291-400
    • Ivanciuc, O.1
  • 129
    • 33845183931 scopus 로고
    • a calculations and the hydration of organic anions
    • Jorgensen, W.L.; Briggs, J.M. A priori pKa calculations and the hydration of organic anions. J. Am. Chem. Soc., 1989, 111(12), 4190-4197.
    • (1989) J. Am. Chem. Soc. , vol.111 , Issue.12 , pp. 4190-4197
    • Jorgensen, W.L.1    Briggs, J.M.2
  • 130
    • 84961981283 scopus 로고    scopus 로고
    • a of carboxylic acids using the ab initio continuum-solvation model PCM-UAHF
    • Schüürmann, G.; Cossi, M.; Barone, V.; Tomasi, J. Prediction of the pKa of carboxylic acids using the ab initio continuum-solvation model PCM-UAHF. J. Phys. Chem. A, 1998, 102(33), 6706-6712. (Pubitemid 128604927)
    • (1998) Journal of Physical Chemistry A , vol.102 , Issue.33 , pp. 6706-6712
    • Schuurmann, G.1    Cossi, M.2    Barone, V.3    Tomasi, J.4
  • 131
    • 28944439105 scopus 로고    scopus 로고
    • a values in aqueous solution I. Carboxylic acids
    • da Silva, C.; da Silva, E.; Nascimento, M. Ab initio calculations of absolute pKa values in aqueous solution I. Carboxylic acids. J. Phys. Chem. A, 1999, 103(50), 11194-11199.
    • (1999) J. Phys. Chem. A , vol.103 , Issue.50 , pp. 11194-11199
    • Da Silva, C.1    Da Silva, E.2    Nascimento, M.3
  • 132
    • 0034704774 scopus 로고    scopus 로고
    • a values in aqueous solution II. Aliphatic alcohols, thiols, and halogenated carboxylic acids
    • da Silva, C.; da Silva, E.; Nascimento, M. Ab initio calculations of absolute pKa values in aqueous solution II. Aliphatic alcohols, thiols, and halogenated carboxylic acids. J. Phys. Chem. A, 2000, 104(11), 2402-2409.
    • (2000) J. Phys. Chem. A , vol.104 , Issue.11 , pp. 2402-2409
    • Da Silva, C.1    Da Silva, E.2    Nascimento, M.3
  • 133
    • 0034287468 scopus 로고    scopus 로고
    • Acidity of organic molecules in the gas phase and in aqueous solvent
    • Topol, I.; Tawa, G.; Caldwell, R.; Eissenstat, M.; Burt, S. Acidity of organic molecules in the gas phase and in aqueous solvent. J. Phys. Chem. A, 2000, 104(42), 9619-9624.
    • (2000) J. Phys. Chem. A , vol.104 , Issue.42 , pp. 9619-9624
    • Topol, I.1    Tawa, G.2    Caldwell, R.3    Eissenstat, M.4    Burt, S.5
  • 135
    • 84962359443 scopus 로고    scopus 로고
    • a calculations for carboxylic acids using Complete Basis Set and Gaussian-n models combined with CPCM continuum solvation methods
    • DOI 10.1021/ja010534f
    • Liptak, M.; Shields, G. Accurate pKa calculations for carboxylic acids using complete basis set and Gaussian-n models combined with CPCM continuum solvation methods. J. Am. Chem. Soc., 2001, 123(30), 7314-7319. (Pubitemid 32879445)
    • (2001) Journal of the American Chemical Society , vol.123 , Issue.30 , pp. 7314-7319
    • Liptak, M.D.1    Shields, G.C.2
  • 137
    • 0037104792 scopus 로고    scopus 로고
    • a using the cluster-continuum model
    • DOI 10.1021/jp025928n
    • Pliego, J.R.; Riveros, J.M. Theoretical calculation of pKa using the cluster-continuum model. J. Phys. Chem. A, 2002, 106(32), 7434-7439. (Pubitemid 35382588)
    • (2002) Journal of Physical Chemistry A , vol.106 , Issue.32 , pp. 7434-7439
    • Pliego Jr., J.R.1    Riveros, J.M.2
  • 138
    • 84962450101 scopus 로고    scopus 로고
    • a determination for a heterogeneous group of organic molecules
    • am Busch, M.S.; Knapp, E.W. Accurate pKa determination for a heterogeneous group of organic molecules. ChemPhysChem, 2004, 5(10), 1513-1522.
    • (2004) ChemPhysChem , vol.5 , Issue.10 , pp. 1513-1522
    • Busch, M.S.1    Knapp, E.W.2
  • 139
    • 3242741731 scopus 로고    scopus 로고
    • Basicity of nucleophilic carbenes in aqueous and nonaqueous solvents - Theoretical predictions
    • DOI 10.1021/ja038973x
    • Magill, A.; Cavell, K.; Yates, B. Basicity of nucleophilic carbenes in aqueous and nonaqueous solvents- theoretical predictions. J. Am. Chem. Soc., 2004, 126(28), 8717-8724. (Pubitemid 38955734)
    • (2004) Journal of the American Chemical Society , vol.126 , Issue.28 , pp. 8717-8724
    • Magill, A.M.1    Cavell, K.J.2    Yates, B.F.3
  • 140
    • 4544228375 scopus 로고    scopus 로고
    • Relationships between aqueous acidities and computed surface- electrostatic potentials and local ionization energies of substituted phenols and benzoic acids
    • DOI 10.1007/s00894-004-0185-x
    • Ma, Y.; Gross, K.C.; Hollingsworth, C.A.; Seybold, P.G.; Murray, J.S. Relationships between aqueous acidities and computed surface-electrostatic potentials and local ionization energies of substituted phenols and benzoic acids. J. Mol. Model., 2004, 10(4), 235-239. (Pubitemid 39236646)
    • (2004) Journal of Molecular Modeling , vol.10 , Issue.4 , pp. 235-239
    • Ma, Y.1    Gross, K.C.2    Hollingsworth, C.A.3    Seybold, P.G.4    Murray, J.S.5
  • 141
    • 33744781264 scopus 로고    scopus 로고
    • a values of protonated benzimidazoles (part 1)
    • DOI 10.1021/jp055084i
    • Brown, T.N.; Mora-Diez, N. Computational determination of aqueous pKa values of protonated benzimidazoles (part 1). J. Phys. Chem. B, 2006, 110(18), 9270-9279. (Pubitemid 43829023)
    • (2006) Journal of Physical Chemistry B , vol.110 , Issue.18 , pp. 9270-9279
    • Brown, T.N.1    Mora-Diez, N.2
  • 142
    • 33750375717 scopus 로고    scopus 로고
    • a values of carboxylic acids in aqueous solution using density functional theory
    • DOI 10.1016/j.jct.2006.05.002, PII S0021961406001054
    • Namazian, M.; Halvani, S. Calculations of pKa values of carboxylic acids in aqueous solution using density functional theory. J. Chem. Therm., 2006, 38(12), 1495-1502. (Pubitemid 44633920)
    • (2006) Journal of Chemical Thermodynamics , vol.38 , Issue.12 , pp. 1495-1502
    • Namazian, M.1    Halvani, S.2
  • 144
    • 68049148341 scopus 로고    scopus 로고
    • a values for hydroxamic acids
    • Dissanayake, D.; Senthilnithy, R. Thermodynamic cycle for the calculation of ab initio pKa values for hydroxamic acids. J. Mol. Struct., 2009, 910(1-3), 93-98.
    • (2009) J. Mol. Struct. , vol.910 , Issue.1-3 , pp. 93-98
    • Dissanayake, D.1    Senthilnithy, R.2
  • 145
    • 70449595643 scopus 로고    scopus 로고
    • Acid dissociation constants of melamine derivatives from density functional theory calculations
    • Jang, Y.H.; Hwang, S.; Chang, S.B.; Ku, J.; Chung, D.S. Acid dissociation constants of melamine derivatives from density functional theory calculations. J. Phys. Chem. A, 2009, 113(46), 13036-13040.
    • (2009) J. Phys. Chem. A , vol.113 , Issue.46 , pp. 13036-13040
    • Jang, Y.H.1    Hwang, S.2    Chang, S.B.3    Ku, J.4    Chung, D.S.5
  • 146
    • 64849117884 scopus 로고    scopus 로고
    • Estimation of molecular acidity via electrostatic potential at the nucleus and valence natural atomic orbitals
    • Liu, S.; Pedersen, L.G. Estimation of molecular acidity via electrostatic potential at the nucleus and valence natural atomic orbitals. J. Phys. Chem. A, 2009, 113(15), 3648-3655.
    • (2009) J. Phys. Chem. A , vol.113 , Issue.15 , pp. 3648-3655
    • Liu, S.1    Pedersen, L.G.2
  • 147
    • 75249103961 scopus 로고    scopus 로고
    • a values. 2. Organic acids
    • Zhang, S.; Baker, J.; Pulay, P. A reliable and effcient first principles-based method for predicting pKa values. 2. Organic acids. J. Phys. Chem. A, 2010, 114(1), 432-442.
    • (2010) J. Phys. Chem. A , vol.114 , Issue.1 , pp. 432-442
    • Zhang, S.1    Baker, J.2    Pulay, P.3
  • 148
    • 77954484530 scopus 로고    scopus 로고
    • a values of the carboxylic acids in aqueous solution with the density functional theory
    • Zeng, Y.; Qian, H.; Chen, X.; Li, Z.; Yu, S.; Xiao, X. Thermodynamic estimate of pKa values of the carboxylic acids in aqueous solution with the density functional theory. Chin. J. Chem., 2010, 28(5), 727-733.
    • (2010) Chin. J. Chem. , vol.28 , Issue.5 , pp. 727-733
    • Zeng, Y.1    Qian, H.2    Chen, X.3    Li, Z.4    Yu, S.5    Xiao, X.6
  • 149
    • 11744331329 scopus 로고
    • a for organic oxyacids using calculated atomic charges
    • Dixon, S.L.; Jurs, P.C. Estimation of pKa for organic oxyacids using calculated atomic charges. J. Comput. Chem., 1993, 14(12), 1460-1467.
    • (1993) J. Comput. Chem. , vol.14 , Issue.12 , pp. 1460-1467
    • Dixon, S.L.1    Jurs, P.C.2
  • 150
    • 84986435688 scopus 로고
    • Application of the multiple computer automated structure evaluation methodology to a quantitative structure-activity relationship study of acidity
    • 1994
    • Klopman, G.; Fercu, D. Application of the multiple computer automated structure evaluation methodology to a quantitative structure-activity relationship study of acidity. J. Comput. Chem., 1994, 15(9), 1041-1050, 1994.
    • (1994) J. Comput. Chem. , vol.15 , Issue.9 , pp. 1041-1050
    • Klopman, G.1    Fercu, D.2
  • 153
    • 55349095068 scopus 로고    scopus 로고
    • as of aliphatic amines using quantum chemical descriptors
    • Seybold, P.G. Analysis of the pKas of aliphatic amines using quantum chemical descriptors. Int. J. Quant. Chem., 2009, 108(15), 2849-2855.
    • (2009) Int. J. Quant. Chem. , vol.108 , Issue.15 , pp. 2849-2855
    • Seybold, P.G.1
  • 156
    • 0036854264 scopus 로고    scopus 로고
    • a using semiempirical molecular orbital methods. Part 2: Application to amines, anilines and various nitrogen containing heterocyclic compounds
    • DOI 10.1002/1521-3838(200211)21:5<473::AID-QSAR473>3.0.CO;2-D
    • Tehan, B.; Lloyd, E.; Wong, M.; Pitt, W.; Gancia, E.; Manallack, D. Estimation of pKa using semiempirical molecular orbital methods. Part 2: Application to amines, anilines and various nitrogen containing heterocyclic compounds. Quant. Struct. Act. Rel., 2002, 21(5), 473-485. (Pubitemid 35398098)
    • (2002) Quantitative Structure-Activity Relationships , vol.21 , Issue.5 , pp. 473-485
    • Tehan, B.G.1    Lloyd, E.J.2    Wong, M.G.3    Pitt, W.R.4    Gancia, E.5    Manallack, D.T.6
  • 157
    • 70350041471 scopus 로고    scopus 로고
    • Empirical procedure for the calculation of ionization constants of organic compounds in water from their molecular volume
    • Zevatskii, Y.; Lysova, S. Empirical procedure for the calculation of ionization constants of organic compounds in water from their molecular volume. Russ. J. Org. Chem., 2009, 45(6), 825-834.
    • (2009) Russ J. Org. Chem. , vol.45 , Issue.6 , pp. 825-834
    • Zevatskii, Y.1    Lysova, S.2
  • 158
    • 55349095068 scopus 로고    scopus 로고
    • as of aliphatic amines using quantum chemical descriptors
    • Seybold, P.G. Analysis of the pKas of aliphatic amines using quantum chemical descriptors. Int. J. Quant. Chem., 2008, 108(15), 2849-2855.
    • (2008) Int. J. Quant. Chem. , vol.108 , Issue.15 , pp. 2849-2855
    • Seybold, P.G.1
  • 159
    • 0026456584 scopus 로고
    • a values of alkylphosphonic acids
    • Ohta, K. Prediction of pKa values of alkylphosphonic acids. Bull. Chem. Soc. Jpn., 1992, 65(9), 2543-2545.
    • (1992) Bull. Chem. Soc. Jpn. , vol.65 , Issue.9 , pp. 2543-2545
    • Ohta, K.1
  • 160
    • 0037026962 scopus 로고    scopus 로고
    • a variations in substituted anilines and phenols
    • Gross, K.C.; Seybold, P.G.; Hadad, C.M. Comparison of different atomic charge schemes for predicting pKa variations in substituted anilines and phenols. Int. J. Quant. Chem., 2002, 90(1), 445-458.
    • (2002) Int. J. Quant. Chem. , vol.90 , Issue.1 , pp. 445-458
    • Gross, K.C.1    Seybold, P.G.2    Hadad, C.M.3
  • 161
    • 67650077389 scopus 로고    scopus 로고
    • Technique for energy decomposition in the study of receptor-ligand complexes
    • Potemkin, V.A.; Pogrebnoy, A.A.; Grishina, M.A. Technique for energy decomposition in the study of receptor-ligand complexes. J. Chem. Inf. Model., 2009, 49(6), 1389-1406.
    • (2009) J. Chem. Inf. Model. , vol.49 , Issue.6 , pp. 1389-1406
    • Potemkin, V.A.1    Pogrebnoy, A.A.2    Grishina, M.A.3
  • 162
    • 0036764025 scopus 로고    scopus 로고
    • QSPR study of the acidity of carbon acids in aqueous solutions
    • Duchowicz, P.R.; Castro, E.A. QSPR study of the acidity of carbon acids in aqueous solutions. Mendeleev Commun., 2002, 12(5), 187-189.
    • (2002) Mendeleev Commun. , vol.12 , Issue.5 , pp. 187-189
    • Duchowicz, P.R.1    Castro, E.A.2
  • 163
    • 33846627291 scopus 로고    scopus 로고
    • QSPR study for estimation of acidity constants of some aromatic acids derivatives using multiple linear regression (MLR) analysis
    • Ghasemi, J.; Saaidpour, S.; Brown, S.D. QSPR study for estimation of acidity constants of some aromatic acids derivatives using multiple linear regression (MLR) analysis. J. Mol. Struct., 2007, 805(1-3), 27-32.
    • (2007) J. Mol. Struct. , vol.805 , Issue.1-3 , pp. 27-32
    • Ghasemi, J.1    Saaidpour, S.2    Brown, S.D.3
  • 164
    • 0024841682 scopus 로고
    • Quantum-mechanically calculated properties for the development of quantitative structure-activity relationships (QSAR'S). pKA-values of phenols and aromatic and aliphatic carboxylic acids
    • Grüber, C.; Buß, V. Quantum-mechanically calculated properties for the development of quantitative structure-activity relationships (QSAR's). pKa-values of phenols and aromatic and aliphatic carboxylic acids. Chemosphere, 1989, 19(10-11), 1595-609. (Pubitemid 20074830)
    • (1989) Chemosphere , vol.19 , Issue.10-11 , pp. 1595-1609
    • Gruber, C.1    Buss, V.2
  • 165
    • 0032890374 scopus 로고    scopus 로고
    • Estimating the pK(a) of phenols, carboxylic acids and alcohols from semi-empirical quantum chemical methods
    • DOI 10.1016/S0045-6535(98)00172-6, PII S0045653598001726
    • Citra, M.J. Estimating the pKa of phenols, carboxylic acids and alcohols from semi-empirical quantum chemical methods. Chemosphere, 1999, 38(1), 191-206. (Pubitemid 28537717)
    • (1999) Chemosphere , vol.38 , Issue.1 , pp. 191-206
    • Citra, M.J.1
  • 166
    • 33845768501 scopus 로고    scopus 로고
    • a values for aliphatic carboxylic acids and alcohols with empirical atomic charge descriptors
    • DOI 10.1021/ci060129d
    • Zhang, J.; Kleinöder, T.; Gasteiger, J. Prediction of pKa values for aliphatic carboxylic acids and alcohols with empirical atomic charge descriptors. J. Chem. Inf. Model., 2006, 46(6), 2256-2266. (Pubitemid 46008099)
    • (2006) Journal of Chemical Information and Modeling , vol.46 , Issue.6 , pp. 2256-2266
    • Jinhua, Z.1    Kleinoder, T.2    Gasteiger, J.3
  • 167
    • 5444239254 scopus 로고    scopus 로고
    • a values. A comparison of different theoretical approaches and a novel procedure
    • Soriano, E.; Cerdán, S.; Ballesteros, P. Computational determination of pKa values. A comparison of different theoretical approaches and a novel procedure. J. Mol. Struct., 2004, 684(1-3), 121-128.
    • (2004) J. Mol. Struct. , vol.684 , Issue.1-3 , pp. 121-128
    • Soriano, E.1    Cerdán, S.2    Ballesteros, P.3
  • 168
    • 34247402143 scopus 로고    scopus 로고
    • Estimation of ionization constants for different classes of organic compounds with the use of the fragmental approach to the search of structureproperty relationships
    • 2007
    • Ivanova, A.; Baskin, I.; Palyulin, V.; Zefirov, N. Estimation of ionization constants for different classes of organic compounds with the use of the fragmental approach to the search of structureproperty relationships. Dokl. Chem., 2007, 413(2), 90-94, 2007.
    • (2007) Dokl. Chem. , vol.413 , Issue.2 , pp. 90-94
    • Ivanova, A.1    Baskin, I.2    Palyulin, V.3    Zefirov, N.4
  • 169
    • 24044549995 scopus 로고    scopus 로고
    • a for neutral and basic drugs based on radial basis function neural networks and the heuristic method
    • DOI 10.1007/s11095-005-6246-8
    • Luan, F.; Ma, W.; Zhang, H.; Zhang, X.; Liu, M.; Hu, Z.; Fan, B. Prediction of pKa for neutral and basic drugs based on radial basis function neural networks and the heuristic method. Pharmaceutical Research, 2005, 22(9), 1454-1460, 2005. (Pubitemid 41215885)
    • (2005) Pharmaceutical Research , vol.22 , Issue.9 , pp. 1454-1460
    • Luan, F.1    Ma, W.2    Zhang, H.3    Zhang, X.4    Liu, M.5    Hu, Z.6    Fan, B.7
  • 171
    • 0346502774 scopus 로고    scopus 로고
    • a Using Quantum Topological Molecular Similarity Descriptors: Application to Carboxylic Acids, Anilines and Phenols
    • DOI 10.1021/jo0347415
    • Chaudry, U.A.; Popelier, P.L.A. Estimation of pKa using quantum topological molecular similarity descriptors: Application to carboxylic acids, anilines and phenols. J. Org. Chem., 2004, 69(2), 233-241, 2004. (Pubitemid 38101703)
    • (2004) Journal of Organic Chemistry , vol.69 , Issue.2 , pp. 233-241
    • Chaudry, U.A.1    Popelier, P.L.A.2
  • 172
    • 0038512085 scopus 로고    scopus 로고
    • a by molecular tree structured fingerprints and PLS
    • 2003
    • Xing, L.; Glen, R.C.; Clark, R.D. Predicting pKa by molecular tree structured fingerprints and PLS. J. Chem. Inform. Comput. Sci., 2003, 43(3), 870-879, 2003.
    • (2003) J. Chem. Inform. Comput. Sci. , vol.43 , Issue.3 , pp. 870-879
    • Xing, L.1    Glen, R.C.2    Clark, R.D.3
  • 173
    • 69549086566 scopus 로고    scopus 로고
    • PKa prediction from "quantum chemical topology"
    • Harding, A.; Wedge, D.; Popelier, P. pKa prediction from "quantum chemical topology". J. Chem. Inf. Model., 2009, 49(8), 1914-1924.
    • (2009) J. Chem. Inf. Model. , vol.49 , Issue.8 , pp. 1914-1924
    • Harding, A.1    Wedge, D.2    Popelier, P.3
  • 174
    • 62549087059 scopus 로고    scopus 로고
    • a) of phenols in different solvents
    • Roy, K.; Popelier, P. Predictive QSPR modeling of the acidic dissociation constant (pKa) of phenols in different solvents. J. Phys. Org. Chem., 2009, 22(3), 186-196.
    • (2009) J. Phys. Org. Chem. , vol.22 , Issue.3 , pp. 186-196
    • Roy, K.1    Popelier, P.2
  • 175
    • 34247208582 scopus 로고    scopus 로고
    • a values
    • DOI 10.1021/ci600295z
    • Gieleciak, R.; Polanski, J. Modeling robust QSAR. 2. Iterative variable elimination schemes for COMSA: Application for modeling benzoic acid pKa values. J. Chem. Inf. Model., 2007, 47(2), 547-556. (Pubitemid 46615956)
    • (2007) Journal of Chemical Information and Modeling , vol.47 , Issue.2 , pp. 547-556
    • Gieleciak, R.1    Polanski, J.2
  • 176
    • 0000109766 scopus 로고
    • Direct prediction of linear free energy substituent effects from 3D structures using comparative molecular field analysis. 1. Electronic effects of substituted benzoic acids
    • Kim, K.H.; Martin, Y.C. Direct prediction of linear free energy substituent effects from 3D structures using comparative molecular field analysis. 1. Electronic effects of substituted benzoic acids. JOrgChem, 1991, 56(8), 2723-2729.
    • (1991) JOrgChem , vol.58 , Issue.8 , pp. 2723-2729
    • Kim, K.H.1    Martin, Y.C.2
  • 177
    • 0025816211 scopus 로고
    • as) of clonidine-like imidazolines, 2-substituted imidazoles, and 1-methyl-2-substituted-imidazoles from 3D structures using a comparative molecular field analysis (COMFA) approach
    • Kim, K.H.; Martin, Y.C. Direct prediction of dissociation constants (pKas) of clonidine-like imidazolines, 2-substituted imidazoles, and 1-methyl-2-substituted-imidazoles from 3D structures using a comparative molecular field analysis (COMFA) approach. J. Med. Chem., 1991, 34(7), 2056-2060.
    • (1991) J. Med. Chem. , vol.34 , Issue.7 , pp. 2056-2060
    • Kim, K.H.1    Martin, Y.C.2
  • 178
    • 0032723279 scopus 로고    scopus 로고
    • Application of multivariate data analysis methods to Comparative Molecular Field Analysis (CoMFA) data: Proton affinities and pKa prediction for nucleic acids components
    • DOI 10.1023/A:1008005522776
    • Gargallo, R.; Sotriffer, C.A.; Liedl, K.R.; Rode, B.M. Application of multivariate data analysis methods to comparative molecular field analysis (COMFA) data: Proton affnities and pKa prediction for nucleic acids components. J. Comp. Aided Mol. Des., 1999, 13(6), 611-623. (Pubitemid 29524917)
    • (1999) Journal of Computer-Aided Molecular Design , vol.13 , Issue.6 , pp. 611-623
    • Gargallo, R.1    Sotriffer, C.A.2    Liedl, K.R.3    Rode, B.M.4
  • 179
    • 31744441243 scopus 로고    scopus 로고
    • Prediction acidity constant of various benzoic acids and phenols in water using linear and nonlinear QSPR models
    • Habibi-Yangjeh, A.; Danandeh-Jenagharad, M.; Nooshyar, M. Prediction acidity constant of various benzoic acids and phenols in water using linear and nonlinear QSPR models. Bull. Kor. Chem. Soc., 2005, 26(12), 2007-2016. (Pubitemid 43175438)
    • (2005) Bulletin of the Korean Chemical Society , vol.26 , Issue.12 , pp. 2007-2016
    • Habibi-Yangjeh, A.1    Danandeh-Jenagharad, M.2    Nooshyar, M.3
  • 181
    • 58549107560 scopus 로고    scopus 로고
    • Application of principal component-genetic algorithm-artificial neural network for prediction acidity constant of various nitrogencontaining compounds in water
    • 2009
    • Habibi-Yangjeh, A.; Pourbasheer, E.; Danandeh-Jenagharad, M. Application of principal component-genetic algorithm-artificial neural network for prediction acidity constant of various nitrogencontaining compounds in water. Monatsh. Chem. Chem. Mon., 2009, 140(1), 15-27, 2009.
    • (2009) Monatsh. Chem. Chem. Mon. , vol.140 , Issue.1 , pp. 15-27
    • Habibi-Yangjeh, A.1    Pourbasheer, E.2    Danandeh-Jenagharad, M.3
  • 182
    • 77951090353 scopus 로고    scopus 로고
    • pH indicators through genetic algorithm-least square support vector regression
    • Goodarzi, M.; Freitas, M.P.; Wu, C.H.; Duchowicz, P.R. pKa modeling and prediction of a series of pH indicators through genetic algorithm-least square support vector regression. Chemometr. Intell. Lab. Syst., 2010, 101(2), 102-109.
    • (2010) Chemometr. Intell. Lab. Syst. , vol.101 , Issue.2 , pp. 102-109
    • Goodarzi, M.1    Freitas, M.P.2    Wu, C.H.3    Duchowicz, P.R.4
  • 183
    • 67749133758 scopus 로고    scopus 로고
    • a) of some organic compounds using linear and nonlinear QSPR methods
    • Goudarzi, N.; Goodarzi, M. Prediction of the acidic dissociation constant (pKa) of some organic compounds using linear and nonlinear QSPR methods. Mol. Phys., 2009, 107(14), 1495-1503.
    • (2009) Mol. Phys. , vol.107 , Issue.14 , pp. 1495-1503
    • Goudarzi, N.1    Goodarzi, M.2
  • 184
    • 0242540027 scopus 로고    scopus 로고
    • a scale
    • Klamt, A.; Eckert, F.; Diedenhofen, M.; Beck, M.E. First principles calculations of aqueous pKa values for organic and inorganic acids using COSMO-RS reveal an inconsistency in the slope of the pKa scale. J. Phys. Chem. A, 2003, 107(44), 9380-9386.
    • (2003) J. Phys. Chem. A , vol.107 , Issue.44 , pp. 9380-9386
    • Klamt, A.1    Eckert, F.2    Diedenhofen, M.3    Beck, M.E.4
  • 185
    • 33644797789 scopus 로고    scopus 로고
    • Accurate prediction of basicity in aqueous solution with COSMO-RS
    • Eckert, F.; Klamt, A. Accurate prediction of basicity in aqueous solution with COSMO-RS. J. Comput. Chem., 2005, 27(1), 11-19.
    • (2005) J. Comput. Chem. , vol.27 , Issue.1 , pp. 11-19
    • Eckert, F.1    Klamt, A.2
  • 186
    • 56449089334 scopus 로고    scopus 로고
    • a Prediction of monoprotic small molecules the SMARTS way
    • Lee, A.; Yu, J.-Y.; Crippen, G. pKa prediction of monoprotic small molecules the SMARTS way. J. Chem. Inf. Model., 2008, 48(10), 2042-2053.
    • (2008) J. Chem. Inf. Model. , vol.48 , Issue.10 , pp. 2042-2053
    • Lee, A.1    Yu, J.-Y.2    Crippen, G.3
  • 187
    • 84962359033 scopus 로고    scopus 로고
    • a values for selected organic acids
    • Pompe, M.; Randiff, M. Variable connectivity model for determination of pKa values for selected organic acids. Acta Chim. Slov., 2007, 54, 605-610.
    • (2007) Acta Chim. Slov. , vol.54 , pp. 605-610
    • Pompe, M.1    Randiff, M.2
  • 188
    • 0000431645 scopus 로고
    • a prediction with
    • continuum electrostatics calculations
    • Potter, M.J.; Gilson, M.K.; McCammon, J.A. Small molecule pKa prediction with continuum electrostatics calculations. J. Am. Chem. Soc., 1994, 116(22), 10298-10299.
    • (1994) J. Am. Chem. Soc. , vol.116 , Issue.22 , pp. 10298-10299
    • Potter, M.J.1    Gilson, M.K.2    McCammon, J.A.3
  • 190
    • 84901486385 scopus 로고
    • Glossary of terms used in physical organic chemistry
    • Müller, P. Glossary of terms used in physical organic chemistry. Pure Appl. Chem., 1994, 66(5), 1077-1184.
    • (1994) Pure Appl. Chem. , vol.66 , Issue.5 , pp. 1077-1184
    • Müller, P.1
  • 191
    • 0030670402 scopus 로고    scopus 로고
    • Simple quantum chemical parameters as an alternative to the Hammett sigma constants in QSAR studies
    • Ertl, P. Simple quantum chemical parameters as an alternative to the Hammett sigma constants in QSAR studies. Quant. Struct. Act. Rel., 1997, 16(5), 377-382, 1997. (Pubitemid 27520616)
    • (1997) Quantitative Structure-Activity Relationships , vol.16 , Issue.5 , pp. 377-382
    • Ertl, P.1
  • 192
    • 0542443644 scopus 로고
    • A re-examination of the Hammett equation
    • 1953
    • Jaffé, H.H. A re-examination of the Hammett equation. Chem. Rev., 1953, 53(2), 191-261, 1953.
    • (1953) Chem. Rev. , vol.53 , Issue.2 , pp. 191-261
    • Jaffé, H.H.1
  • 195
    • 64249142111 scopus 로고    scopus 로고
    • Distilling free-form natural laws from experimental data
    • Schmidt, M.; Lipson, H. Distilling free-form natural laws from experimental data. Science, 2009, 324(5923), 81-85.
    • (2009) Science , vol.324 , Issue.5923 , pp. 81-85
    • Schmidt, M.1    Lipson, H.2
  • 197
    • 0025029558 scopus 로고
    • Neural networks applied to quantitative structure-activity relationship analysis
    • DOI 10.1021/jm00171a037
    • Aoyama, T.; Suzuki, Y.; Ichikawa, H. Neural networks applied to quantitative structure-activity relationship analysis. J. Med. Chem., 1990, 33(9), 2583-2590. (Pubitemid 20274217)
    • (1990) Journal of Medicinal Chemistry , vol.33 , Issue.9 , pp. 2583-2590
    • Aoyama, T.1    Suzuki, Y.2    Ichikawa, H.3
  • 199
    • 0029970338 scopus 로고    scopus 로고
    • Evolutionary optimization in quantitative structure-activity relationship: An application of genetic neural networks
    • DOI 10.1021/jm9507035
    • So, S.S.; Karplus, M. Evolutionary optimization in quantitative structure-activity relationship: An application of genetic neural networks. J. Med. Chem., 1996, 39(7), 1521-1530. (Pubitemid 26108787)
    • (1996) Journal of Medicinal Chemistry , vol.39 , Issue.7 , pp. 1521-1530
    • So, S.-S.1    Karplus, M.2
  • 200
    • 0027667984 scopus 로고
    • Evaluation of neural networks based on radial basis functions and their application to the prediction of boiling points from structural parameters
    • Lohninger, H. Evaluation of neural networks based on radial basis functions and their application to the prediction of boiling points from structural parameters. J. Chem. Inf. Comput. Sci., 1993, 33(5), 736-744.
    • (1993) J. Chem. Inf. Comput. Sci. , vol.33 , Issue.5 , pp. 736-744
    • Lohninger, H.1
  • 202
    • 51049096780 scopus 로고    scopus 로고
    • Kernel methods in machine learning
    • Hofmann, T.; Schölkopf, B.; Smola, A. Kernel methods in machine learning. Ann. Stat., 2008, 36(6), 1171-1220.
    • (2008) Ann. Stat. , vol.36 , Issue.6 , pp. 1171-1220
    • Hofmann, T.1    Schölkopf, B.2    Smola, A.3
  • 203
    • 0347243182 scopus 로고    scopus 로고
    • Nonlinear component analysis as a kernel eigenvalue problem
    • Schölkopf, B.; Smola, A.; Müller, K.R. Nonlinear component analysis as a kernel eigenvalue problem. Neural. Comput., 1998, 10(5), 1299-1319.
    • (1998) Neural. Comput. , vol.10 , Issue.5 , pp. 1299-1319
    • Schölkopf, B.1    Smola, A.2    Müller, K.R.3
  • 204
    • 0038259120 scopus 로고    scopus 로고
    • Kernel partial least squares regression in reproducing kernel Hilbert space
    • Rosipal, R.; Trejo, L. Kernel partial least squares regression in reproducing kernel Hilbert space. J. Mach. Learn. Res., 2001, 2, 97-123.
    • (2001) J. Mach. Learn. Res. , vol.2 , pp. 97-123
    • Rosipal, R.1    Trejo, L.2
  • 205
    • 2442514721 scopus 로고    scopus 로고
    • An optimization perspective on kernel partial least squares regression
    • J. Suykens; G. Horváth; S. Basu; C. Micchelli; J. Vandewalle, eds., Leuven, Belgium, IOS Press, chap.11
    • Bennett, K.; Embrechts, M. An optimization perspective on kernel partial least squares regression. In: J. Suykens; G. Horváth; S. Basu; C. Micchelli; J. Vandewalle, eds., Proceedings of the NATO Advanced Study Institute on Learning Theory and Practice, Leuven, Belgium, IOS Press, 2002, chap. 11, pp. 227-250.
    • (2002) Proceedings of the NATO Advanced Study Institute on Learning Theory and Practice , pp. 227-250
    • Bennett, K.1    Embrechts, M.2
  • 206
    • 78650213242 scopus 로고    scopus 로고
    • Estimation of acid dissociation constants using graph kernels
    • Rupp, M.; Körner, R.; Tetko, I. Estimation of acid dissociation constants using graph kernels. Mol. Inf., 2010, 29(10), 731-740.
    • (2010) Mol. Inf. , vol.29 , Issue.10 , pp. 731-740
    • Rupp, M.1    Körner, R.2    Tetko, I.3
  • 207
    • 37249009571 scopus 로고    scopus 로고
    • Kernel approach to molecular similarity based on iterative graph similarity
    • DOI 10.1021/ci700274r
    • Rupp, M.; Proschak, E.; Schneider, G. Kernel approach to molecular similarity based on iterative graph similarity. J. Chem. Inf. Model., 2007, 47(6), 2280-2286. (Pubitemid 350275094)
    • (2007) Journal of Chemical Information and Modeling , vol.47 , Issue.6 , pp. 2280-2286
    • Rupp, M.1    Proschak, E.2    Schneider, G.3
  • 208
    • 84908820072 scopus 로고
    • p H values of tissue fluids
    • Lea & Febiger, Philadelphia
    • Newton, D.W.; Kluza, R.B. pKa values of drug substances and pH values of tissue fluids. In: Principles of Medicinal Chemistry, Lea & Febiger, Philadelphia, 1989, pp. 861-872.
    • (1989) Principles of Medicinal Chemistry , pp. 861-872
    • Newton, D.W.1    Kluza, R.B.2
  • 209
    • 0001061628 scopus 로고
    • Estimation of chemical reactivity parameters and physical properties of organic molecules using SPARC
    • P. Politzer; J.S. Murray eds, Elsevier, New York, chap. 9
    • Carreira, L.A.; Hilal, S.; Karickhoff, S.W. Estimation of chemical reactivity parameters and physical properties of organic molecules using SPARC. In: P. Politzer; J.S. Murray, eds., Quantitative Treatments of Solute/Solvent Interactions, Elsevier, New York, 1994, chap. 9, pp. 291-309.
    • (1994) Quantitative Treatments of Solute/Solvent Interactions , pp. 291-309
    • Carreira, L.A.1    Hilal, S.2    Karickhoff, S.W.3
  • 212
    • 34748840224 scopus 로고    scopus 로고
    • a values of drugs based on their molecular structures
    • Meloun, M.; Bordovská, S. Benchmarking and validating algorithms that estimate pKa values of drugs based on their molecular structures. Anal. Bioanal. Chem, 2007, 389(4), 1618-1642.
    • (2007) Anal. Bioanal. Chem , vol.389 , Issue.4 , pp. 1618-1642
    • Meloun, M.1    Bordovská, S.2
  • 214
    • 75249101196 scopus 로고    scopus 로고
    • a prediction tools on the gold standard dataset
    • Balogh, G.T.; Gyarmati, B.; Nagy, B.; Molnár, L.; Keserü, G.M. Comparative evaluation of in silico pKa prediction tools on the gold standard dataset. QSAR Comb. Sci., 2009, 28(10), 1148-1155.
    • (2009) QSAR Comb. Sci. , vol.28 , Issue.10 , pp. 1148-1155
    • Balogh, G.T.1    Gyarmati, B.2    Nagy, B.3    Molnár, L.4    Keserü, G.M.5
  • 215
    • 77951983882 scopus 로고    scopus 로고
    • a estimation methods on 211 druglike compounds
    • Manchester, J.; Walkup, G.; Rivin, O.; You, Z. Evaluation of pKa estimation methods on 211 druglike compounds. J. Chem. Inf. Model., 2010, 50(4), 565-571.
    • (2010) J. Chem. Inf. Model. , vol.50 , Issue.4 , pp. 565-571
    • Manchester, J.1    Walkup, G.2    Rivin, O.3    You, Z.4
  • 216
    • 79955733894 scopus 로고    scopus 로고
    • Advanced Chemistry Development Inc. Toronto Canada, (accessed 2010-07-22)
    • Advanced Chemistry Development Inc., Toronto, Canada. www.acdlabs.com, (accessed 2010-07-22).
  • 217
    • 79955715258 scopus 로고    scopus 로고
    • Simulations Plus Inc., Lancaster, California, USA, accessed 2010-07-22)
    • Simulations Plus Inc., Lancaster, California, USA. www.simulations-plus. com, (accessed 2010-07-22).
  • 218
    • 79955729568 scopus 로고    scopus 로고
    • Pharma Algorithms, Toronto, Canada, (accessed 2010-07-22)
    • Pharma Algorithms, Toronto, Canada. www.ap-algorithms.com, (accessed 2010-07-22).
  • 219
    • 79955724162 scopus 로고    scopus 로고
    • Schrödinger LLC, New York, New York, USA. accessed 2010-07-22)
    • Schrödinger LLC, New York, New York, USA. www.schrodinger.com, (accessed 2010-07-22).
  • 221
    • 0037149134 scopus 로고    scopus 로고
    • Accurate prediction of acidity constants in aqueous solution via density functional theory and self-consistent reaction field methods
    • DOI 10.1021/jp012533f
    • Klicić , J.J.; Friesner, R.A.; Liu, S.Y.; Guida, W.C. Accurate prediction of acidity constants in aqueous solution via density functional theory and self-consistent reaction field methods. J. Phys. Chem. A, 2002, 106(7), 1327-1335. (Pubitemid 35264279)
    • (2002) Journal of Physical Chemistry A , vol.106 , Issue.7 , pp. 1327-1335
    • Klicic, J.J.1    Friesner, R.A.2    Liu, S.-Y.3    Guida, W.C.4
  • 222
    • 79955731736 scopus 로고    scopus 로고
    • ChemAxon Ltd., Budapest, Hungary, (accessed 2010-07-22)
    • ChemAxon Ltd., Budapest, Hungary. www.chemaxon.com/marvin, (accessed 2010-07-22).
  • 223
    • 79955746897 scopus 로고    scopus 로고
    • 233rd National Meeting of the American Chemical Society, Chicago, Illinois, USA
    • Szegezdi, J.; Csizmadia, F. A method for calculating the pKa values of small and large molecules. In: 233rd National Meeting of the American Chemical Society, Chicago, Illinois, USA, 2007.
    • (2007) a Values of Small and Large Molecules
    • Szegezdi, J.1    Csizmadia, F.2
  • 224
    • 79955720263 scopus 로고    scopus 로고
    • Molecular Discovery Ltd., Pinner, United Kingdom, (accessed 2010-07-22)
    • Molecular Discovery Ltd., Pinner, United Kingdom. www.moldiscovery.com, (accessed 2010-07-22).
  • 227
    • 79955728533 scopus 로고    scopus 로고
    • Accelrys Inc., San Diego, California, USA, Accessed 2010-07-22)
    • Accelrys inc., San Diego, California, USA. www.accelrys.com, (accessed 2010-07-22).
  • 228
    • 79955730886 scopus 로고    scopus 로고
    • University of Georgia, Athens, Georgia, USA, accessed 2010-07-22)
    • University of Georgia, Athens, Georgia, USA. www.ibmlc2.chem.uga.edu/ sparc, (accessed 2010-07-22).
  • 229
    • 79955728763 scopus 로고    scopus 로고
    • Helmholtz Center Munich, Neuherberg, Germany, www.qspr.eu, (accessed 2010-07-22). accessed 2010-07-22)
    • Helmholtz Center Munich, Neuherberg, Germany. www.ochem.eu, www.qspr.eu, (accessed 2010-07-22).
  • 230
    • 79955706409 scopus 로고    scopus 로고
    • Virtual Computational Chemistry Laboratory, Germany. accessed 2010-07-22)
    • Virtual Computational Chemistry Laboratory, Germany. www.vcclab.org, (accessed 2010-07-22).
  • 232
    • 54249125512 scopus 로고    scopus 로고
    • Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: Focusing on applicability domain and overfitting by variable selection
    • Tetko, I.V.; Sushko, I.; Pandey, A.K.; Zhu, H.; Tropsha, A.; Papa, E.; Oberg, T.; Todeschini, R.; Fourches, D.; Varnek, A. Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: Focusing on applicability domain and overfitting by variable selection. J. Chem. Inf. Model., 2008, 48(9), 1733-1746.
    • (2008) J. Chem. Inf. Model. , vol.48 , Issue.9 , pp. 1733-1746
    • Tetko, I.V.1    Sushko, I.2    Pandey, A.K.3    Zhu, H.4    Tropsha, A.5    Papa, E.6    Oberg, T.7    Todeschini, R.8    Fourches, D.9    Varnek, A.10
  • 233
    • 33745821727 scopus 로고    scopus 로고
    • Can we estimate the accuracy of ADME-Tox predictions?
    • DOI 10.1016/j.drudis.2006.06.013, PII S1359644606002303
    • Tetko, I.; Bruneau, P.; Mewes, H.W.; Rohrer, D.; Poda, G. Can we estimate the accuracy of ADME-Tox predictions? Drug Discov. Today, 2006, 11(15-16), 700-707. (Pubitemid 44038632)
    • (2006) Drug Discovery Today , vol.11 , Issue.15-16 , pp. 700-707
    • Tetko, I.V.1    Bruneau, P.2    Mewes, H.-W.3    Rohrer, D.C.4    Poda, G.I.5
  • 234
    • 77952616341 scopus 로고    scopus 로고
    • Graph kernels for molecular similarity
    • Rupp, M.; Schneider, G. Graph kernels for molecular similarity. Mol. Inf., 2010, 29(4), 266-273.
    • (2010) Mol. Inf. , vol.29 , Issue.4 , pp. 266-273
    • Rupp, M.1    Schneider, G.2


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