-
1
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4Å resolution
-
Ban N., Nissen P., Hansen J., Moore P.B., Steitz T.A. The complete atomic structure of the large ribosomal subunit at 2.4Å resolution. Science 2000, 289:905-920.
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
2
-
-
71049158443
-
Comprehensive molecular structure of the eukaryotic ribosome
-
Taylor D.J., Devkota B., Huang A.D., Topf M., Narayanan E., Sali A., Harvey S.C., Frank J. Comprehensive molecular structure of the eukaryotic ribosome. Structure 2009, 17:1591-1604.
-
(2009)
Structure
, vol.17
, pp. 1591-1604
-
-
Taylor, D.J.1
Devkota, B.2
Huang, A.D.3
Topf, M.4
Narayanan, E.5
Sali, A.6
Harvey, S.C.7
Frank, J.8
-
3
-
-
55949113125
-
Side-chain recognition and gating in the ribosome exit tunnel
-
Petrone P.M., Snow C.D., Lucent D., Pande V.S. Side-chain recognition and gating in the ribosome exit tunnel. Proc Natl Acad Sci U S A 2008, 105:16549-16554.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 16549-16554
-
-
Petrone, P.M.1
Snow, C.D.2
Lucent, D.3
Pande, V.S.4
-
4
-
-
34547569922
-
Mapping the electrostatic potential within the ribosomal exit tunnel
-
Lu J., Kobertz W.R., Deutsch C. Mapping the electrostatic potential within the ribosomal exit tunnel. J Mol Biol 2007, 371:1378-1391.
-
(2007)
J Mol Biol
, vol.371
, pp. 1378-1391
-
-
Lu, J.1
Kobertz, W.R.2
Deutsch, C.3
-
5
-
-
33745628037
-
The geometry of the ribosomal polypeptide exit tunnel
-
Voss N.R., Gerstein M., Steitz T.A., Moore P.B. The geometry of the ribosomal polypeptide exit tunnel. J Mol Biol 2006, 360:893-906.
-
(2006)
J Mol Biol
, vol.360
, pp. 893-906
-
-
Voss, N.R.1
Gerstein, M.2
Steitz, T.A.3
Moore, P.B.4
-
6
-
-
78049302075
-
Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action
-
Dunkle J.A., Xiong L., Mankin A.S., Cate J.H. Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action. Proc Natl Acad Sci U S A 2010, 107:17152-17157.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 17152-17157
-
-
Dunkle, J.A.1
Xiong, L.2
Mankin, A.S.3
Cate, J.H.4
-
7
-
-
78049250815
-
Revisiting the structures of several antibiotics bound to the bacterial ribosome
-
Bulkley D., Innis C.A., Blaha G., Steitz T.A. Revisiting the structures of several antibiotics bound to the bacterial ribosome. Proc Natl Acad Sci U S A 2010, 107:17158-17163.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 17158-17163
-
-
Bulkley, D.1
Innis, C.A.2
Blaha, G.3
Steitz, T.A.4
-
8
-
-
54249096045
-
Electrostatics in the ribosomal tunnel modulate chain elongation rates
-
Lu J., Deutsch C. Electrostatics in the ribosomal tunnel modulate chain elongation rates. J Mol Biol 2008, 384:73-86.
-
(2008)
J Mol Biol
, vol.384
, pp. 73-86
-
-
Lu, J.1
Deutsch, C.2
-
9
-
-
77956884449
-
The key function of a conserved and modified rRNA residue in the ribosomal response to the nascent peptide
-
Vazquez-Laslop N., Ramu H., Klepacki D., Kannan K., Mankin A.S. The key function of a conserved and modified rRNA residue in the ribosomal response to the nascent peptide. EMBO J 2010, 29:3108-3117.
-
(2010)
EMBO J
, vol.29
, pp. 3108-3117
-
-
Vazquez-Laslop, N.1
Ramu, H.2
Klepacki, D.3
Kannan, K.4
Mankin, A.S.5
-
10
-
-
0028035265
-
The leader peptides of attenuation-regulated chloramphenicol resistance genes inhibit translational termination
-
Moffat J.G., Tate W.P., Lovett P.S. The leader peptides of attenuation-regulated chloramphenicol resistance genes inhibit translational termination. J Bacteriol 1994, 176:7115-7117.
-
(1994)
J Bacteriol
, vol.176
, pp. 7115-7117
-
-
Moffat, J.G.1
Tate, W.P.2
Lovett, P.S.3
-
11
-
-
0029909497
-
Inhibition of nascent-peptide release at translation termination
-
Cao J., Geballe A.P. Inhibition of nascent-peptide release at translation termination. Mol Cell Biol 1996, 16:7109-7114.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 7109-7114
-
-
Cao, J.1
Geballe, A.P.2
-
12
-
-
0037072627
-
Instruction of translating ribosome by nascent peptide
-
Gong F., Yanofsky C. Instruction of translating ribosome by nascent peptide. Science 2002, 297:1864-1867.
-
(2002)
Science
, vol.297
, pp. 1864-1867
-
-
Gong, F.1
Yanofsky, C.2
-
13
-
-
0037040411
-
The ribosomal exit tunnel functions as a discriminating gate
-
Nakatogawa H., Ito K. The ribosomal exit tunnel functions as a discriminating gate. Cell 2002, 108:629-636.
-
(2002)
Cell
, vol.108
, pp. 629-636
-
-
Nakatogawa, H.1
Ito, K.2
-
14
-
-
1642570293
-
A nascent polypeptide domain that can regulate translation elongation
-
Fang P., Spevak C.C., Wu C., Sachs M.S. A nascent polypeptide domain that can regulate translation elongation. Proc Natl Acad Sci U S A 2004, 101:4059-4064.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 4059-4064
-
-
Fang, P.1
Spevak, C.C.2
Wu, C.3
Sachs, M.S.4
-
15
-
-
43049089746
-
Molecular mechanism of drug-dependent ribosome stalling
-
Vazquez-Laslop N., Thum C., Mankin A.S. Molecular mechanism of drug-dependent ribosome stalling. Mol Cell 2008, 30:190-202.
-
(2008)
Mol Cell
, vol.30
, pp. 190-202
-
-
Vazquez-Laslop, N.1
Thum, C.2
Mankin, A.S.3
-
16
-
-
0019982963
-
Transcription initiation at the tryptophanase promoter of Escherichia coli K-12
-
Deeley M.C., Yanofsky C. Transcription initiation at the tryptophanase promoter of Escherichia coli K-12. J Bacteriol 1982, 151:942-951.
-
(1982)
J Bacteriol
, vol.151
, pp. 942-951
-
-
Deeley, M.C.1
Yanofsky, C.2
-
17
-
-
0022352611
-
Evidence for transcription antitermination control of tryptophanase operon expression in Escherichia coli K-12
-
Stewart V., Yanofsky C. Evidence for transcription antitermination control of tryptophanase operon expression in Escherichia coli K-12. J Bacteriol 1985, 164:731-740.
-
(1985)
J Bacteriol
, vol.164
, pp. 731-740
-
-
Stewart, V.1
Yanofsky, C.2
-
18
-
-
0037053345
-
Analysis of tryptophanase operon expression in vitro: accumulation of TnaC-peptidyl-tRNA in a release factor 2-depleted S-30 extract prevents Rho factor action, simulating induction
-
Gong F., Yanofsky C. Analysis of tryptophanase operon expression in vitro: accumulation of TnaC-peptidyl-tRNA in a release factor 2-depleted S-30 extract prevents Rho factor action, simulating induction. J Biol Chem 2002, 277:17095-17100.
-
(2002)
J Biol Chem
, vol.277
, pp. 17095-17100
-
-
Gong, F.1
Yanofsky, C.2
-
19
-
-
70350443395
-
Tryptophan inhibits Proteus vulgaris TnaC leader peptide elongation, activating tna operon expression
-
Cruz-Vera L.R., Yang R., Yanofsky C. Tryptophan inhibits Proteus vulgaris TnaC leader peptide elongation, activating tna operon expression. J Bacteriol 2009, 191:7001-7006.
-
(2009)
J Bacteriol
, vol.191
, pp. 7001-7006
-
-
Cruz-Vera, L.R.1
Yang, R.2
Yanofsky, C.3
-
20
-
-
23044445236
-
Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression
-
Cruz-Vera L.R., Rajagopal S., Squires C., Yanofsky C. Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression. Mol Cell 2005, 19:333-343.
-
(2005)
Mol Cell
, vol.19
, pp. 333-343
-
-
Cruz-Vera, L.R.1
Rajagopal, S.2
Squires, C.3
Yanofsky, C.4
-
21
-
-
0035910426
-
Reproducing tna operon regulation in vitro in an S-30 system tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA
-
Gong F., Yanofsky C. Reproducing tna operon regulation in vitro in an S-30 system tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA. J Biol Chem 2001, 276:1974-1983.
-
(2001)
J Biol Chem
, vol.276
, pp. 1974-1983
-
-
Gong, F.1
Yanofsky, C.2
-
22
-
-
33644851066
-
Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide
-
Cruz-Vera L.R., Gong M., Yanofsky C. Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide. Proc Natl Acad Sci U S A 2006, 103:3598-3603.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 3598-3603
-
-
Cruz-Vera, L.R.1
Gong, M.2
Yanofsky, C.3
-
23
-
-
34247868068
-
Ribosomal features essential for tna operon induction: tryptophan binding at the peptidyl transferase center
-
Cruz-Vera L.R., New A., Squires C., Yanofsky C. Ribosomal features essential for tna operon induction: tryptophan binding at the peptidyl transferase center. J Bacteriol 2007, 189:3140-3146.
-
(2007)
J Bacteriol
, vol.189
, pp. 3140-3146
-
-
Cruz-Vera, L.R.1
New, A.2
Squires, C.3
Yanofsky, C.4
-
24
-
-
47249162502
-
Conserved residues Asp16 and Pro24 of TnaC-tRNAPro participate in tryptophan induction of tna operon expression
-
Cruz-Vera L.R., Yanofsky C. Conserved residues Asp16 and Pro24 of TnaC-tRNAPro participate in tryptophan induction of tna operon expression. J Bacteriol 2008, 190:4791-4797.
-
(2008)
J Bacteriol
, vol.190
, pp. 4791-4797
-
-
Cruz-Vera, L.R.1
Yanofsky, C.2
-
25
-
-
66149135994
-
23S rRNA nucleotides in the peptidyl transferase center are essential for tryptophanase operon induction
-
Yang R., Cruz-Vera L.R., Yanofsky C. 23S rRNA nucleotides in the peptidyl transferase center are essential for tryptophanase operon induction. J Bacteriol 2009, 191:3445-3450.
-
(2009)
J Bacteriol
, vol.191
, pp. 3445-3450
-
-
Yang, R.1
Cruz-Vera, L.R.2
Yanofsky, C.3
-
26
-
-
77952589053
-
Recognition of the regulatory nascent chain TnaC by the ribosome
-
Trabuco L.G., Harrison C.B., Schreiner E., Schulten K. Recognition of the regulatory nascent chain TnaC by the ribosome. Structure 2010, 18:627-637.
-
(2010)
Structure
, vol.18
, pp. 627-637
-
-
Trabuco, L.G.1
Harrison, C.B.2
Schreiner, E.3
Schulten, K.4
-
27
-
-
71549124362
-
Structural insight into nascent polypeptide chain-mediated translational stalling
-
Seidelt B., Innis C.A., Wilson D.N., Gartmann M., Armache J.P., Villa E., Trabuco L.G., Becker T., Mielke T., Schulten K., et al. Structural insight into nascent polypeptide chain-mediated translational stalling. Science 2009, 326:1412-1415.
-
(2009)
Science
, vol.326
, pp. 1412-1415
-
-
Seidelt, B.1
Innis, C.A.2
Wilson, D.N.3
Gartmann, M.4
Armache, J.P.5
Villa, E.6
Trabuco, L.G.7
Becker, T.8
Mielke, T.9
Schulten, K.10
-
28
-
-
0037072619
-
Biochemistry. Sense and sensitivity - controlling the ribosome
-
Sachs M.S., Geballe A.P. Biochemistry. Sense and sensitivity - controlling the ribosome. Science 2002, 297:1820-1821.
-
(2002)
Science
, vol.297
, pp. 1820-1821
-
-
Sachs, M.S.1
Geballe, A.P.2
-
30
-
-
0023188996
-
Demonstration of erythromycin-dependent stalling of ribosomes on the ermC leader transcript
-
Narayanan C.S., Dubnau D. Demonstration of erythromycin-dependent stalling of ribosomes on the ermC leader transcript. J Biol Chem 1987, 262:1766-1771.
-
(1987)
J Biol Chem
, vol.262
, pp. 1766-1771
-
-
Narayanan, C.S.1
Dubnau, D.2
-
31
-
-
0022515356
-
Chloramphenicol induces translation of the mRNA for a chloramphenicol-resistance gene in Bacillus subtilis
-
Duvall E.J., Lovett P.S. Chloramphenicol induces translation of the mRNA for a chloramphenicol-resistance gene in Bacillus subtilis. Proc Natl Acad Sci U S A 1986, 83:3939-3943.
-
(1986)
Proc Natl Acad Sci U S A
, vol.83
, pp. 3939-3943
-
-
Duvall, E.J.1
Lovett, P.S.2
-
32
-
-
0028349139
-
Analysis of the secondary structure that negatively regulates inducible cat translation by use of chemical probing and mutagenesis
-
Harrod R., Gu Z., Lovett P.S. Analysis of the secondary structure that negatively regulates inducible cat translation by use of chemical probing and mutagenesis. Gene 1994, 140:79-83.
-
(1994)
Gene
, vol.140
, pp. 79-83
-
-
Harrod, R.1
Gu, Z.2
Lovett, P.S.3
-
33
-
-
13844292691
-
SecM facilitates translocase function of SecA by localizing its biosynthesis
-
Nakatogawa H., Murakami A., Mori H., Ito K. SecM facilitates translocase function of SecA by localizing its biosynthesis. Genes Dev 2005, 19:436-444.
-
(2005)
Genes Dev
, vol.19
, pp. 436-444
-
-
Nakatogawa, H.1
Murakami, A.2
Mori, H.3
Ito, K.4
-
34
-
-
0035105116
-
Secretion monitor, SecM, undergoes self-translation arrest in the cytosol
-
Nakatogawa H., Ito K. Secretion monitor, SecM, undergoes self-translation arrest in the cytosol. Mol Cell 2001, 7:185-192.
-
(2001)
Mol Cell
, vol.7
, pp. 185-192
-
-
Nakatogawa, H.1
Ito, K.2
-
35
-
-
33646517888
-
Genetically encoded but nonpolypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall
-
Muto H., Nakatogawa H., Ito K. Genetically encoded but nonpolypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall. Mol Cell 2006, 22:545-552.
-
(2006)
Mol Cell
, vol.22
, pp. 545-552
-
-
Muto, H.1
Nakatogawa, H.2
Ito, K.3
-
36
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5Å resolution
-
Schuwirth B.S., Borovinskaya M.A., Hau C.W., Zhang W., Vila-Sanjurjo A., Holton J.M., Cate J.H. Structures of the bacterial ribosome at 3.5Å resolution. Science 2005, 310:827-834.
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Cate, J.H.7
-
37
-
-
77249145819
-
Divergent stalling sequences sense and control cellular physiology
-
Ito K., Chiba S., Pogliano K. Divergent stalling sequences sense and control cellular physiology. Biochem Biophys Res Commun 2010, 393:1-5.
-
(2010)
Biochem Biophys Res Commun
, vol.393
, pp. 1-5
-
-
Ito, K.1
Chiba, S.2
Pogliano, K.3
-
38
-
-
33646524478
-
Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
-
Mitra K., Schaffitzel C., Fabiola F., Chapman M.S., Ban N., Frank J. Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements. Mol Cell 2006, 22:533-543.
-
(2006)
Mol Cell
, vol.22
, pp. 533-543
-
-
Mitra, K.1
Schaffitzel, C.2
Fabiola, F.3
Chapman, M.S.4
Ban, N.5
Frank, J.6
-
39
-
-
33744551950
-
Translation arrest requires two-way communication between a nascent polypeptide and the ribosome
-
Woolhead C.A., Johnson A.E., Bernstein H.D. Translation arrest requires two-way communication between a nascent polypeptide and the ribosome. Mol Cell 2006, 22:587-598.
-
(2006)
Mol Cell
, vol.22
, pp. 587-598
-
-
Woolhead, C.A.1
Johnson, A.E.2
Bernstein, H.D.3
-
40
-
-
64749115067
-
The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel
-
Yap M.N., Bernstein H.D. The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel. Mol Cell 2009, 34:201-211.
-
(2009)
Mol Cell
, vol.34
, pp. 201-211
-
-
Yap, M.N.1
Bernstein, H.D.2
-
41
-
-
0029120053
-
Translational regulation in response to changes in amino acid availability in Neurospora crassa
-
Luo Z., Freitag M., Sachs M.S. Translational regulation in response to changes in amino acid availability in Neurospora crassa. Mol Cell Biol 1995, 15:5235-5245.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 5235-5245
-
-
Luo, Z.1
Freitag, M.2
Sachs, M.S.3
-
42
-
-
0029671432
-
A UV-induced mutation in Neurospora that affects translational regulation in response to arginine
-
Freitag M., Dighde N., Sachs M.S. A UV-induced mutation in Neurospora that affects translational regulation in response to arginine. Genetics 1996, 142:117-127.
-
(1996)
Genetics
, vol.142
, pp. 117-127
-
-
Freitag, M.1
Dighde, N.2
Sachs, M.S.3
-
43
-
-
0031016655
-
Arginine-specific regulation mediated by the Neurospora crassa arg-2 upstream open reading frame in a homologous, cell-free in vitro translation system
-
Wang Z., Sachs M.S. Arginine-specific regulation mediated by the Neurospora crassa arg-2 upstream open reading frame in a homologous, cell-free in vitro translation system. J Biol Chem 1997, 272:255-261.
-
(1997)
J Biol Chem
, vol.272
, pp. 255-261
-
-
Wang, Z.1
Sachs, M.S.2
-
44
-
-
0023659507
-
The leader peptide of yeast gene CPA1 is essential for the translational repression of its expression
-
Werner M., Feller A., Messenguy F., Pierard A. The leader peptide of yeast gene CPA1 is essential for the translational repression of its expression. Cell 1987, 49:805-813.
-
(1987)
Cell
, vol.49
, pp. 805-813
-
-
Werner, M.1
Feller, A.2
Messenguy, F.3
Pierard, A.4
-
45
-
-
0035890071
-
Physical evidence for distinct mechanisms of translational control by upstream open reading frames
-
Gaba A., Wang Z., Krishnamoorthy T., Hinnebusch A.G., Sachs M.S. Physical evidence for distinct mechanisms of translational control by upstream open reading frames. EMBO J 2001, 20:6453-6463.
-
(2001)
EMBO J
, vol.20
, pp. 6453-6463
-
-
Gaba, A.1
Wang, Z.2
Krishnamoorthy, T.3
Hinnebusch, A.G.4
Sachs, M.S.5
-
46
-
-
70349536104
-
Evolutionary roles of upstream open reading frames in mediating gene regulation in fungi
-
Hood H.M., Neafsey D.E., Galagan J., Sachs M.S. Evolutionary roles of upstream open reading frames in mediating gene regulation in fungi. Annu Rev Microbiol 2009, 63:385-409.
-
(2009)
Annu Rev Microbiol
, vol.63
, pp. 385-409
-
-
Hood, H.M.1
Neafsey, D.E.2
Galagan, J.3
Sachs, M.S.4
-
47
-
-
27644520989
-
Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay
-
Gaba A., Jacobson A., Sachs M.S. Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay. Mol Cell 2005, 20:449-460.
-
(2005)
Mol Cell
, vol.20
, pp. 449-460
-
-
Gaba, A.1
Jacobson, A.2
Sachs, M.S.3
-
48
-
-
78650354576
-
Sequence requirements for ribosome stalling by the arginine attenuator peptide
-
Spevak C.C., Ivanov I., Sachs M.S. Sequence requirements for ribosome stalling by the arginine attenuator peptide. J Biol Chem 2010, 285:40933-40942.
-
(2010)
J Biol Chem
, vol.285
, pp. 40933-40942
-
-
Spevak, C.C.1
Ivanov, I.2
Sachs, M.S.3
-
49
-
-
77957325774
-
Structural basis for translational stalling by human cytomegalovirus and fungal arginine attenuator peptide
-
Bhushan S., Meyer H., Starosta A.L., Becker T., Mielke T., Berninghausen O., Sattler M., Wilson D.N., Beckmann R. Structural basis for translational stalling by human cytomegalovirus and fungal arginine attenuator peptide. Mol Cell 2010, 40:138-146.
-
(2010)
Mol Cell
, vol.40
, pp. 138-146
-
-
Bhushan, S.1
Meyer, H.2
Starosta, A.L.3
Becker, T.4
Mielke, T.5
Berninghausen, O.6
Sattler, M.7
Wilson, D.N.8
Beckmann, R.9
-
50
-
-
79851505187
-
SecM-stalled ribosomes adopt an altered geometry at the peptidyl transferase center
-
Bhushan S., Hoffmann T., Seidelt B., Frauenfeld J., Mielke T., Berninghausen O., Wilson D.N., Beckmann R. SecM-stalled ribosomes adopt an altered geometry at the peptidyl transferase center. PLoS Biol 2011, 9:e1000581.
-
(2011)
PLoS Biol
, vol.9
-
-
Bhushan, S.1
Hoffmann, T.2
Seidelt, B.3
Frauenfeld, J.4
Mielke, T.5
Berninghausen, O.6
Wilson, D.N.7
Beckmann, R.8
|