-
1
-
-
0033515041
-
An Escherichia coli strain with all chromosomal rRNA operons inactivated: Complete exchange of rRNA genes between bacteria
-
Asai, T., D. Zaporojets, C. Squires, and C. L. Squires. 1999. An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. Proc. Natl. Acad. Sci. USA 96:1971-1976.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 1971-1976
-
-
Asai, T.1
Zaporojets, D.2
Squires, C.3
Squires, C.L.4
-
2
-
-
0037249473
-
Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression
-
Bashan, A., I. Agmon, R. Zarivach, F. Schluenzen, J. Harms, R. Berisio, H. Bartels, F. Franceschi, T. Auerbach, H. A. Hansen, E. Kossoy, M. Kessler, and A. Yonath. 2003. Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression. Mol. Cell 11:91-102.
-
(2003)
Mol. Cell
, vol.11
, pp. 91-102
-
-
Bashan, A.1
Agmon, I.2
Zarivach, R.3
Schluenzen, F.4
Harms, J.5
Berisio, R.6
Bartels, H.7
Franceschi, F.8
Auerbach, T.9
Hansen, H.A.10
Kossoy, E.11
Kessler, M.12
Yonath, A.13
-
3
-
-
0029909497
-
Inhibition of nascent-peptide release at translation termination
-
Cao, J., and A. P. Geballe. 1996. Inhibition of nascent-peptide release at translation termination. Mol. Cell. Biol. 16:7109-7114.
-
(1996)
Mol. Cell. Biol
, vol.16
, pp. 7109-7114
-
-
Cao, J.1
Geballe, A.P.2
-
4
-
-
33644851066
-
Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide
-
Cruz-Vera, L. R., M. Gong, and C. Yanofsky. 2006. Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide. Proc. Natl. Acad. Sci. USA 103:3598-3603.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 3598-3603
-
-
Cruz-Vera, L.R.1
Gong, M.2
Yanofsky, C.3
-
5
-
-
23044445236
-
Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression
-
Cruz-Vera, L. R., S. Rajagopal, C. Squires, and C. Yanofsky. 2005. Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression. Mol. Cell 19:333-343.
-
(2005)
Mol. Cell
, vol.19
, pp. 333-343
-
-
Cruz-Vera, L.R.1
Rajagopal, S.2
Squires, C.3
Yanofsky, C.4
-
6
-
-
0019825937
-
Nucleotide sequence of the structural gene for tryptophanase of Escherichia coli K-12
-
Deeley, M. C., and C. Yanofsky. 1981. Nucleotide sequence of the structural gene for tryptophanase of Escherichia coli K-12. J. Bacteriol. 147:787-796.
-
(1981)
J. Bacteriol
, vol.147
, pp. 787-796
-
-
Deeley, M.C.1
Yanofsky, C.2
-
8
-
-
1642570293
-
A nascent polypeptide domain that can regulate translation elongation
-
Fang, P., C. C. Spevak, C. Wu, and M. S. Sachs. 2004. A nascent polypeptide domain that can regulate translation elongation. Proc. Natl. Acad. Sci. USA 101:4059-4064.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 4059-4064
-
-
Fang, P.1
Spevak, C.C.2
Wu, C.3
Sachs, M.S.4
-
9
-
-
0035162904
-
Binding site of macrolide antibiotics on the ribosome: New resistance mutation identifies a specific interaction of ketolides with rRNA
-
Garza-Ramos, G., L. Xiong, P. Zhong, and A. Mankin. 2001. Binding site of macrolide antibiotics on the ribosome: new resistance mutation identifies a specific interaction of ketolides with rRNA. J. Bacteriol. 183:6898-6907.
-
(2001)
J. Bacteriol
, vol.183
, pp. 6898-6907
-
-
Garza-Ramos, G.1
Xiong, L.2
Zhong, P.3
Mankin, A.4
-
10
-
-
0035979174
-
The mechanism of tryptophan induction of tryptophanase operon expression: Tryptophan inhibits release factor-mediated cleavage of TnaC-peptidyl-tRNA(Pro)
-
Gong, F., K. Ito, Y. Nakamura, and C. Yanofsky. 2001. The mechanism of tryptophan induction of tryptophanase operon expression: tryptophan inhibits release factor-mediated cleavage of TnaC-peptidyl-tRNA(Pro). Proc. Natl. Acad. Sci. USA 98:8997-9001.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8997-9001
-
-
Gong, F.1
Ito, K.2
Nakamura, Y.3
Yanofsky, C.4
-
11
-
-
0037053345
-
Analysis of tryptophanase operon expression in vitro: Accumulation of TnaC-peptidyl-tRNA in a release factor 2-depleted S-30 extract prevents Rho factor action, simulating induction
-
Gong, F., and C. Yanofsky. 2002. Analysis of tryptophanase operon expression in vitro: accumulation of TnaC-peptidyl-tRNA in a release factor 2-depleted S-30 extract prevents Rho factor action, simulating induction. J. Biol. Chem. 277:17095-17100.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 17095-17100
-
-
Gong, F.1
Yanofsky, C.2
-
12
-
-
0037072627
-
Instruction of translating ribosome by nascent peptide
-
Gong, F., and C. Yanofsky. 2002. Instruction of translating ribosome by nascent peptide. Science 297:1864-1867.
-
(2002)
Science
, vol.297
, pp. 1864-1867
-
-
Gong, F.1
Yanofsky, C.2
-
13
-
-
0035910426
-
Reproducing tna operon regulation in vitro in an S-30 system. Tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA
-
Gong, F., and C. Yanofsky. 2001. Reproducing tna operon regulation in vitro in an S-30 system. Tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA. J. Biol. Chem. 276:1974-1983.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 1974-1983
-
-
Gong, F.1
Yanofsky, C.2
-
14
-
-
34247876081
-
-
13a.Gong, M., L. R. Cruz-Vera, and C. Yanofsky. 2007. Ribosome recycling factor and release factor 3 action promotes ribosome stalling during tryptophan induction of tna operon expression in Escherichia coli. J. Bacteriol. 189:3147-3155.
-
13a.Gong, M., L. R. Cruz-Vera, and C. Yanofsky. 2007. Ribosome recycling factor and release factor 3 action promotes ribosome stalling during tryptophan induction of tna operon expression in Escherichia coli. J. Bacteriol. 189:3147-3155.
-
-
-
-
15
-
-
0032502997
-
Ribosome-catalyzed peptide-bond formation with an A-site substrate covalently linked to 23S ribosomal RNA
-
Green, R., C. Switzer, and H. F. Noller. 1998. Ribosome-catalyzed peptide-bond formation with an A-site substrate covalently linked to 23S ribosomal RNA. Science 280:286-289.
-
(1998)
Science
, vol.280
, pp. 286-289
-
-
Green, R.1
Switzer, C.2
Noller, H.F.3
-
16
-
-
0038013670
-
Structures of five antibiotics bound at the peptidyl transferase center of the large ribosomal subunit
-
Hansen, J. L., P. B. Moore, and T. A. Steitz. 2003. Structures of five antibiotics bound at the peptidyl transferase center of the large ribosomal subunit. J. Mol. Biol. 330:1061-1075.
-
(2003)
J. Mol. Biol
, vol.330
, pp. 1061-1075
-
-
Hansen, J.L.1
Moore, P.B.2
Steitz, T.A.3
-
17
-
-
0024828055
-
A guide for probing native small nuclear RNA and ribonucleoprotein structures
-
Krol, A., and P. Carbon. 1989. A guide for probing native small nuclear RNA and ribonucleoprotein structures. Methods Enzymol. 180:212-227.
-
(1989)
Methods Enzymol
, vol.180
, pp. 212-227
-
-
Krol, A.1
Carbon, P.2
-
18
-
-
0029982204
-
Ribosome regulation by the nascent peptide
-
Lovett, P. S., and E. J. Rogers. 1996. Ribosome regulation by the nascent peptide. Microbiol. Rev. 60:366-385.
-
(1996)
Microbiol. Rev
, vol.60
, pp. 366-385
-
-
Lovett, P.S.1
Rogers, E.J.2
-
19
-
-
33646517888
-
Genetically encoded but non-polypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall
-
Muto, H., H. Nakatogawa, and K. Ito. 2006. Genetically encoded but non-polypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall. Mol. Cell 22:545-552.
-
(2006)
Mol. Cell
, vol.22
, pp. 545-552
-
-
Muto, H.1
Nakatogawa, H.2
Ito, K.3
-
20
-
-
0037040411
-
The ribosomal exit tunnel functions as a discriminating gate
-
Nakatogawa, H., and K. Ito. 2002. The ribosomal exit tunnel functions as a discriminating gate. Cell 108:629-636.
-
(2002)
Cell
, vol.108
, pp. 629-636
-
-
Nakatogawa, H.1
Ito, K.2
-
21
-
-
0033529799
-
Direct crosslinking of the antitumor antibiotic sparsomycin, and its derivatives, to A2602 in the peptidyl transferase center of 23S-like rRNA within ribosome-tRNA complexes
-
Porse, B. T., S. V. Kirillov, M. J. Awayez, H. C. Ottenheijm, and R. A. Garrett. 1999. Direct crosslinking of the antitumor antibiotic sparsomycin, and its derivatives, to A2602 in the peptidyl transferase center of 23S-like rRNA within ribosome-tRNA complexes. Proc. Natl. Acad. Sci. USA 96:9003-9008.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9003-9008
-
-
Porse, B.T.1
Kirillov, S.V.2
Awayez, M.J.3
Ottenheijm, H.C.4
Garrett, R.A.5
-
22
-
-
0034637523
-
In vitro translation of the upstream open reading frame in the mammalian mRNA encoding S-adenosylmethionine decarboxylase
-
Raney, A., A. C. Baron, G. J. Mize, G. L. Law, and D. R. Morris. 2000. In vitro translation of the upstream open reading frame in the mammalian mRNA encoding S-adenosylmethionine decarboxylase. J. Biol. Chem. 275:24444-24450.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 24444-24450
-
-
Raney, A.1
Baron, A.C.2
Mize, G.J.3
Law, G.L.4
Morris, D.R.5
-
23
-
-
4644277087
-
Stationary-phase quorum-sensing signals affect autoinducer-2 and gene expression in Escherichia coli
-
Ren, D., L. A. Bedzyk, R. W. Ye, S. M. Thomas, and T. K. Wood. 2004. Stationary-phase quorum-sensing signals affect autoinducer-2 and gene expression in Escherichia coli. Appl. Environ. Microbiol. 70:2038-2043.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 2038-2043
-
-
Ren, D.1
Bedzyk, L.A.2
Ye, R.W.3
Thomas, S.M.4
Wood, T.K.5
-
24
-
-
0034032601
-
Puromycin-rRNA interaction sites at the peptidyl transferase center
-
Rodriguez-Fonseca, C., H. Phan, K. S. Long, B. T. Porse, S. V. Kirillov, R. Amils, and R. A. Garrett. 2000. Puromycin-rRNA interaction sites at the peptidyl transferase center. RNA 6:744-754.
-
(2000)
RNA
, vol.6
, pp. 744-754
-
-
Rodriguez-Fonseca, C.1
Phan, H.2
Long, K.S.3
Porse, B.T.4
Kirillov, S.V.5
Amils, R.6
Garrett, R.A.7
-
25
-
-
28544452248
-
An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA
-
Schmeing, T. M., K. S. Huang, S. A. Strobel, and T. A. Steitz. 2005. An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA. Nature 438:520-524.
-
(2005)
Nature
, vol.438
, pp. 520-524
-
-
Schmeing, T.M.1
Huang, K.S.2
Strobel, S.A.3
Steitz, T.A.4
-
26
-
-
0036177483
-
A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits
-
Schmeing, T. M., A. C. Seila, J. L. Hansen, B. Freeborn, J. K. Soukup, S. A. Scaringe, S. A. Strobel, P. B. Moore, and T. A. Steitz. 2002. A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits. Nat. Struct. Biol. 9:225-230.
-
(2002)
Nat. Struct. Biol
, vol.9
, pp. 225-230
-
-
Schmeing, T.M.1
Seila, A.C.2
Hansen, J.L.3
Freeborn, B.4
Soukup, J.K.5
Scaringe, S.A.6
Strobel, S.A.7
Moore, P.B.8
Steitz, T.A.9
-
27
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 A resolution
-
Schuwirth, B. S., M. A. Borovinskaya, C. W. Hau, W. Zhang, A. Vila-Sanjurjo, J. M. Holton, and J. H. Cate. 2005. Structures of the bacterial ribosome at 3.5 A resolution. Science 310:827-834.
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Cate, J.H.7
-
28
-
-
0024241761
-
Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
-
Stern, S., D. Moazed, and H. F. Noller. 1988. Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol. 164:481-489.
-
(1988)
Methods Enzymol
, vol.164
, pp. 481-489
-
-
Stern, S.1
Moazed, D.2
Noller, H.F.3
-
29
-
-
0022352611
-
Evidence for transcription antitermination control of tryptophanase operon expression in Escherichia coli K-12
-
Stewart, V., and C. Yanofsky. 1985. Evidence for transcription antitermination control of tryptophanase operon expression in Escherichia coli K-12. J. Bacteriol. 164:731-740.
-
(1985)
J. Bacteriol
, vol.164
, pp. 731-740
-
-
Stewart, V.1
Yanofsky, C.2
-
30
-
-
0036220450
-
Bacterial cell-to-cell communication: Sorry, can't talk now-gone to lunch!
-
Winzer, K., K. R. Hardie, and P. Williams. 2002. Bacterial cell-to-cell communication: sorry, can't talk now-gone to lunch! Curr. Opin. Microbiol. 5:216-222.
-
(2002)
Curr. Opin. Microbiol
, vol.5
, pp. 216-222
-
-
Winzer, K.1
Hardie, K.R.2
Williams, P.3
-
31
-
-
2542470615
-
The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release
-
Youngman, E. M., J. L. Brunelle, A. B. Kochaniak, and R. Green. 2004. The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release. Cell 117:589-599.
-
(2004)
Cell
, vol.117
, pp. 589-599
-
-
Youngman, E.M.1
Brunelle, J.L.2
Kochaniak, A.B.3
Green, R.4
-
32
-
-
30044447928
-
The ribosome exit tunnel can entropically stabilize α-helix
-
Ziv, G., G. Haran, and D. Thirumalai. 2005. The ribosome exit tunnel can entropically stabilize α-helix. Proc. Natl. Acad. Sci. USA 102:18956-18961.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 18956-18961
-
-
Ziv, G.1
Haran, G.2
Thirumalai, D.3
|