-
1
-
-
20444368456
-
A crevice adjoining the ribosome tunnel: hints for cotranslational folding
-
Amit M., Berisio R., Baram D., Harms J., Bashan A., and Yonath A. A crevice adjoining the ribosome tunnel: hints for cotranslational folding. FEBS Lett. 579 (2005) 3207-3213
-
(2005)
FEBS Lett.
, vol.579
, pp. 3207-3213
-
-
Amit, M.1
Berisio, R.2
Baram, D.3
Harms, J.4
Bashan, A.5
Yonath, A.6
-
2
-
-
0037407668
-
Structural insight into the role of the ribosomal tunnel in cellular regulation
-
Berisio R., Schluenzen F., Harms J., Bashan A., Auerbach T., Baram D., and Yonath A. Structural insight into the role of the ribosomal tunnel in cellular regulation. Nat. Struct. Biol. 10 (2003) 366-370
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 366-370
-
-
Berisio, R.1
Schluenzen, F.2
Harms, J.3
Bashan, A.4
Auerbach, T.5
Baram, D.6
Yonath, A.7
-
3
-
-
0242407458
-
Translocon "pulling" of nascent SecM controls the duration of its translational pause and secretion-responsive secA regulation
-
Butkus M.E., Prundeanu L.B., and Oliver D.B. Translocon "pulling" of nascent SecM controls the duration of its translational pause and secretion-responsive secA regulation. J. Bacteriol. 185 (2003) 6719-6722
-
(2003)
J. Bacteriol.
, vol.185
, pp. 6719-6722
-
-
Butkus, M.E.1
Prundeanu, L.B.2
Oliver, D.B.3
-
4
-
-
11144227271
-
SsrA tagging of Escherichia coli SecM at its translation arrest sequence
-
Collier J., Bohn C., and Bouloc P. SsrA tagging of Escherichia coli SecM at its translation arrest sequence. J. Biol. Chem. 279 (2004) 54193-54201
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 54193-54201
-
-
Collier, J.1
Bohn, C.2
Bouloc, P.3
-
5
-
-
23044445236
-
Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression
-
Cruz-Vera L.R., Rajagopal S., Squires C., and Yanofsky C. Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression. Mol. Cell 19 (2005) 333-343
-
(2005)
Mol. Cell
, vol.19
, pp. 333-343
-
-
Cruz-Vera, L.R.1
Rajagopal, S.2
Squires, C.3
Yanofsky, C.4
-
6
-
-
33644851066
-
Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide
-
Cruz-Vera L.R., Gong M., and Yanofsky C. Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide. Proc. Natl. Acad. Sci. USA 103 (2006) 3598-3603
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 3598-3603
-
-
Cruz-Vera, L.R.1
Gong, M.2
Yanofsky, C.3
-
7
-
-
27144451454
-
Homogeneous stalled ribosome nascent chain complexes produced in vivo or in vitro
-
Evans M.S., Ugrinov K.G., Frese M.-A., and Clark P.L. Homogeneous stalled ribosome nascent chain complexes produced in vivo or in vitro. Nat. Methods 2 (2005) 757-762
-
(2005)
Nat. Methods
, vol.2
, pp. 757-762
-
-
Evans, M.S.1
Ugrinov, K.G.2
Frese, M.-A.3
Clark, P.L.4
-
8
-
-
1842766175
-
Three-dimensional structures of translating ribosomes by cryo-EM
-
Gilbert R.J.C., Fucini P., Connell S., Fuller S.D., Nierhaus K.H., Robinson C.V., Dobson C.M., and Stuart D.I. Three-dimensional structures of translating ribosomes by cryo-EM. Mol. Cell 14 (2004) 57-66
-
(2004)
Mol. Cell
, vol.14
, pp. 57-66
-
-
Gilbert, R.J.C.1
Fucini, P.2
Connell, S.3
Fuller, S.D.4
Nierhaus, K.H.5
Robinson, C.V.6
Dobson, C.M.7
Stuart, D.I.8
-
9
-
-
0037072627
-
Instruction of translating ribosome by nascent peptide
-
Gong F., and Yanofsky C. Instruction of translating ribosome by nascent peptide. Science 297 (2002) 1864-1867
-
(2002)
Science
, vol.297
, pp. 1864-1867
-
-
Gong, F.1
Yanofsky, C.2
-
10
-
-
0024835265
-
Selection of the initiator tRNA by Escherichia coli initiation factors
-
Hartz D., McPheeters D.S., and Gold L. Selection of the initiator tRNA by Escherichia coli initiation factors. Genes Dev. 3 (1989) 1899-1912
-
(1989)
Genes Dev.
, vol.3
, pp. 1899-1912
-
-
Hartz, D.1
McPheeters, D.S.2
Gold, L.3
-
11
-
-
0037072794
-
Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination
-
Hayes C.S., Bose B., and Sauer R.T. Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination. J. Biol. Chem. 277 (2002) 33825-33832
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 33825-33832
-
-
Hayes, C.S.1
Bose, B.2
Sauer, R.T.3
-
12
-
-
0015503195
-
Relation between aminoacyl-tRNA stability and the fixed amino acid
-
Hentzen D., Mandel P., and Garel J.P. Relation between aminoacyl-tRNA stability and the fixed amino acid. Biochim. Biophys. Acta 281 (1972) 228-232
-
(1972)
Biochim. Biophys. Acta
, vol.281
, pp. 228-232
-
-
Hentzen, D.1
Mandel, P.2
Garel, J.P.3
-
13
-
-
0030973162
-
Ribotoxic stress response: activation of the stress-activated protein kinase JNK1 by inhibitors of the peptidyl transferase reaction and by sequence-specific RNA damage to the alpha-sarcin/ricin loop in the 28S rRNA
-
Iordanov M.S., Pribnow D., Magun J.L., Dinh T.H., Pearson J.A., Chen S.L., and Magun B.E. Ribotoxic stress response: activation of the stress-activated protein kinase JNK1 by inhibitors of the peptidyl transferase reaction and by sequence-specific RNA damage to the alpha-sarcin/ricin loop in the 28S rRNA. Mol. Cell. Biol. 17 (1997) 3373-3381
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 3373-3381
-
-
Iordanov, M.S.1
Pribnow, D.2
Magun, J.L.3
Dinh, T.H.4
Pearson, J.A.5
Chen, S.L.6
Magun, B.E.7
-
14
-
-
0029982204
-
Ribosome regulation by the nascent peptide
-
Lovett P.S., and Rogers E.J. Ribosome regulation by the nascent peptide. Microbiol. Rev. 60 (1996) 366-385
-
(1996)
Microbiol. Rev.
, vol.60
, pp. 366-385
-
-
Lovett, P.S.1
Rogers, E.J.2
-
15
-
-
30944437007
-
Nascent peptide in the 'birth canal' of the ribosome
-
Mankin A.S. Nascent peptide in the 'birth canal' of the ribosome. Trends Biochem. Sci. 31 (2006) 11-13
-
(2006)
Trends Biochem. Sci.
, vol.31
, pp. 11-13
-
-
Mankin, A.S.1
-
16
-
-
0031575402
-
Dual regulation of Escherichia coli secA translation by distinct upstream elements
-
McNicholas P., Salavati R., and Oliver D. Dual regulation of Escherichia coli secA translation by distinct upstream elements. J. Mol. Biol. 265 (1997) 128-141
-
(1997)
J. Mol. Biol.
, vol.265
, pp. 128-141
-
-
McNicholas, P.1
Salavati, R.2
Oliver, D.3
-
17
-
-
27844444793
-
Structure of the E. coli protein-conducting channel bound to a translating ribosome
-
Mitra K., Schaffitzel C., Shaikh T., Tama F., Jenni S., Brooks C.L., Ban N., and Frank J. Structure of the E. coli protein-conducting channel bound to a translating ribosome. Nature 438 (2005) 318-324
-
(2005)
Nature
, vol.438
, pp. 318-324
-
-
Mitra, K.1
Schaffitzel, C.2
Shaikh, T.3
Tama, F.4
Jenni, S.5
Brooks, C.L.6
Ban, N.7
Frank, J.8
-
18
-
-
4344668509
-
Translation arrest of SecM is essential for the basal and regulated expression of SecA
-
Murakami A., Nakatogawa H., and Ito K. Translation arrest of SecM is essential for the basal and regulated expression of SecA. Proc. Natl. Acad. Sci. USA 101 (2004) 12330-12335
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12330-12335
-
-
Murakami, A.1
Nakatogawa, H.2
Ito, K.3
-
19
-
-
0035105116
-
Secretion monitor, SecM, undergoes self-translation arrest in the cytosol
-
Nakatogawa H., and Ito K. Secretion monitor, SecM, undergoes self-translation arrest in the cytosol. Mol. Cell 7 (2001) 185-192
-
(2001)
Mol. Cell
, vol.7
, pp. 185-192
-
-
Nakatogawa, H.1
Ito, K.2
-
20
-
-
0037040411
-
The ribosomal exit tunnel functions as a discriminating gate
-
Nakatogawa H., and Ito K. The ribosomal exit tunnel functions as a discriminating gate. Cell 108 (2002) 629-636
-
(2002)
Cell
, vol.108
, pp. 629-636
-
-
Nakatogawa, H.1
Ito, K.2
-
21
-
-
1842506046
-
Control of SecA and SecM translation by protein secretion
-
Nakatogawa H., Murakami A., and Ito K. Control of SecA and SecM translation by protein secretion. Curr. Opin. Microbiol. 7 (2004) 145-150
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 145-150
-
-
Nakatogawa, H.1
Murakami, A.2
Ito, K.3
-
22
-
-
13844292691
-
SecM facilitates translocase function of SecA by localizing its biosynthesis
-
Nakatogawa H., Murakami A., Mori H., and Ito K. SecM facilitates translocase function of SecA by localizing its biosynthesis. Genes Dev. 19 (2005) 436-444
-
(2005)
Genes Dev.
, vol.19
, pp. 436-444
-
-
Nakatogawa, H.1
Murakami, A.2
Mori, H.3
Ito, K.4
-
23
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
Nissen P., Hansen J., Ban N., Moore P.B., and Steitz T.A. The structural basis of ribosome activity in peptide bond synthesis. Science 289 (2000) 920-930
-
(2000)
Science
, vol.289
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
24
-
-
0031709169
-
Regulation of Escherichia coli secA by cellular protein secretion proficiency requires an intact gene X signal sequence and an active translocon
-
Oliver D., Norman J., and Sarker S. Regulation of Escherichia coli secA by cellular protein secretion proficiency requires an intact gene X signal sequence and an active translocon. J. Bacteriol. 180 (1998) 5240-5242
-
(1998)
J. Bacteriol.
, vol.180
, pp. 5240-5242
-
-
Oliver, D.1
Norman, J.2
Sarker, S.3
-
25
-
-
23744453365
-
Nascent peptide-mediated translation elongation arrest coupled with mRNA degradation in the CGS1 gene of Arabidopsis
-
Onouchi H., Nagami Y., Haraguchi Y., Nakamoto M., Nishimura Y., Sakurai R., Nagao N., Kawasaki D., Kadokura Y., and Naito S. Nascent peptide-mediated translation elongation arrest coupled with mRNA degradation in the CGS1 gene of Arabidopsis. Genes Dev. 19 (2005) 1799-1810
-
(2005)
Genes Dev.
, vol.19
, pp. 1799-1810
-
-
Onouchi, H.1
Nagami, Y.2
Haraguchi, Y.3
Nakamoto, M.4
Nishimura, Y.5
Sakurai, R.6
Nagao, N.7
Kawasaki, D.8
Kadokura, Y.9
Naito, S.10
-
26
-
-
0034662681
-
Directed evolution of green fluorescent protein by a new versatile PCR strategy for site-directed and semi-random mutagenesis
-
Sawano A., and Miyawaki A. Directed evolution of green fluorescent protein by a new versatile PCR strategy for site-directed and semi-random mutagenesis. Nucleic Acids Res. 28 (2000) e78
-
(2000)
Nucleic Acids Res.
, vol.28
-
-
Sawano, A.1
Miyawaki, A.2
-
27
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 Å resolution
-
Schuwirth B.S., Borovinskaya M.A., Hau C.W., Zhang W., Vila-Sanjurjo A., Holton J.M., and Cate J.H. Structures of the bacterial ribosome at 3.5 Å resolution. Science 310 (2005) 827-834
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Cate, J.H.7
-
28
-
-
0034904102
-
Cell-free translation reconstituted with purified components
-
Shimizu Y., Inoue A., Tomari Y., Suzuki T., Yokogawa T., Nishikawa K., and Ueda T. Cell-free translation reconstituted with purified components. Nat. Biotechnol. 19 (2001) 751-755
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 751-755
-
-
Shimizu, Y.1
Inoue, A.2
Tomari, Y.3
Suzuki, T.4
Yokogawa, T.5
Nishikawa, K.6
Ueda, T.7
-
29
-
-
0036850399
-
The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons
-
Sunohara T., Abo T., Inada T., and Aiba H. The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons. RNA 8 (2002) 1416-1427
-
(2002)
RNA
, vol.8
, pp. 1416-1427
-
-
Sunohara, T.1
Abo, T.2
Inada, T.3
Aiba, H.4
-
30
-
-
1842596222
-
Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli
-
Sunohara T., Jojima K., Tagami H., Inada T., and Aiba H. Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli. J. Biol. Chem. 279 (2004) 15368-15375
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 15368-15375
-
-
Sunohara, T.1
Jojima, K.2
Tagami, H.3
Inada, T.4
Aiba, H.5
-
31
-
-
0037040406
-
Regulatory nascent peptides in the ribosomal tunnel
-
Tenson T., and Ehrenberg M. Regulatory nascent peptides in the ribosomal tunnel. Cell 108 (2002) 591-594
-
(2002)
Cell
, vol.108
, pp. 591-594
-
-
Tenson, T.1
Ehrenberg, M.2
-
32
-
-
0038690158
-
The mechanism of action of macrolides, lincosamides and streptogramin B reveals the nascent peptide exit path in the ribosome
-
Tenson T., Lovmar M., and Ehrenberg M. The mechanism of action of macrolides, lincosamides and streptogramin B reveals the nascent peptide exit path in the ribosome. J. Mol. Biol. 330 (2003) 1005-1014
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 1005-1014
-
-
Tenson, T.1
Lovmar, M.2
Ehrenberg, M.3
-
33
-
-
1542358892
-
Nascent membrane and secretory proteins differ in FRET-detected folding far inside the ribosome and in their exposure to ribosomal proteins
-
Woolhead C.A., McCormick P.J., and Johnson A.E. Nascent membrane and secretory proteins differ in FRET-detected folding far inside the ribosome and in their exposure to ribosomal proteins. Cell 116 (2004) 725-736
-
(2004)
Cell
, vol.116
, pp. 725-736
-
-
Woolhead, C.A.1
McCormick, P.J.2
Johnson, A.E.3
|