Gcn1 and actin binding to Yih1: Implications for activation of the eIF2 kinase GCN2

Journal of Biological Chemistry

Volumn 286, Issue 12, 2011, Pages 10341-10355

  Sattlegger, Evelyn ^a,c   Barbosa, João A R G ^d,e   Moraes, Maria Carolina S ^b,f   Martins, Rafael M ^b   Hinnebusch, Alan G ^c   Castilho, Beatriz A ^b  

^a MASSEY UNIVERSITY   (New Zealand)

^b FEDERAL UNIVERSITY OF SÃO PAULO   (Brazil)

^c EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

^d LABORATÓRIO NACIONAL DE LUZ SÍNCROTRON   (Brazil)

^e UNIVERSIDADE CATÓLICA DE BRASÍLIA   (Brazil)

^f UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN-BINDING SITES; BACTERIAL PROTEIN; BINDING DETERMINANT; CELLULAR COMPONENTS; CYTOSKELETONS; MEMORY FORMATION; N-TERMINALS; ORTHOLOGS; STRESS RESPONSE;

AMINO ACIDS; BIOCHEMISTRY; CHEMICAL ACTIVATION; COMPLEXATION; ENZYMES; MAMMALS;

BINDING SITES;

ACTIN; ASPARTIC ACID; BACTERIAL PROTEIN; BINDING PROTEIN; GLUTAMIC ACID; PROTEIN GCN1; PROTEIN GCN2; PROTEIN YIGZ; PROTEIN YIH1; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; ENZYME ACTIVATION; ESCHERICHIA COLI; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; SIGNAL TRANSDUCTION; YEAST;

ACTINS; BINDING SITES; CYTOSKELETON; ENZYME ACTIVATION; MICROFILAMENT PROTEINS; MULTIENZYME COMPLEXES; PEPTIDE ELONGATION FACTORS; PROTEIN BINDING; PROTEIN BIOSYNTHESIS; PROTEIN STRUCTURE, TERTIARY; PROTEIN-SERINE-THREONINE KINASES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

BACTERIA (MICROORGANISMS); EUKARYOTA; MAMMALIA; PROKARYOTA;

EID: 79953229539     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.171587     Document Type: Article

References (53)

1. Dever, T. E. (2002) Cell 108, 545-556
2. Hinnebusch, A. G. (2000) in Translational Control of Gene Expression (Sonenberg, N., Hershey, J. W., and Mathews, M. B., eds) pp. 185-243, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
3. Costa-Mattioli, M., Gobert, D., Harding, H., Herdy, B., Azzi, M., Bruno, M., Bidinosti, M., Ben Mamou, C., Marcinkiewicz, E., Yoshida, M., Imataka, H., Cuello, A. C., Seidah, N., Sossin, W., Lacaille, J. C., Ron, D., Nader, K., and Sonenberg, N. (2005) Nature 436, 1166-1173
4. Fallarino, F., Grohmann, U., You, S., McGrath, B. C., Cavener, D. R., Vacca, C., Orabona, C., Bianchi, R., Belladonna, M. L., Volpi, C., Santamaria, P., Fioretti, M. C., and Puccetti, P. (2006) J. Immunol. 176, 6752-6761
5. Hao, S., Sharp, J. W., Ross-Inta, C. M., McDaniel, B. J., Anthony, T. G., Wek, R. C., Cavener, D. R., McGrath, B. C., Rudell, J. B., Koehnle, T. J., and Gietzen, D. W. (2005) Science 307, 1776-1778
6. Maurin, A. C., Jousse, C., Averous, J., Parry, L., Bruhat, A., Cherasse, Y., Zeng, H., Zhang, Y., Harding, H. P., Ron, D., and Fafournoux, P. (2005) Cell Metab. 1, 273-277
7. Doerks, T., Copley, R. R., Schultz, J., Ponting, C. P., and Bork, P. (2002) Genome Res. 12, 47-56
8. Sattlegger, E., and Hinnebusch, A. G. (2000) EMBO J. 19, 6622-6633
9. Kubota, H., Sakaki, Y., and Ito, T. (2000) J. Biol. Chem. 275, 20243-20246
10. Sattlegger, E., and Hinnebusch, A. G. (2005) J. Biol. Chem. 280, 16514-16521
11. Marton, M. J., Crouch, D., and Hinnebusch, A. G. (1993) Mol. Cell. Biol. 13, 3541-3556
12. Vazquez de Aldana, C. R., Marton, M. J., and Hinnebusch, A. G. (1995) EMBO J. 14, 3184-3199
13. Marton, M. J., Vazquez de Aldana, C. R., Qiu, H., Chakraburtty, K., and Hinnebusch, A. G. (1997) Mol. Cell. Biol. 17, 4474-4489
14. Nameki, N., Yoneyama, M., Koshiba, S., Tochio, N., Inoue, M., Seki, E., Matsuda, T., Tomo, Y., Harada, T., Saito, K., Kobayashi, N., Yabuki, T., Aoki, M., Nunokawa, E., Matsuda, N., Sakagami, N., Terada, T., Shirouzu, M., Yoshida, M., Hirota, H., Osanai, T., Tanaka, A., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kinoshita, K., Güntert, P., Kigawa, T., and Yokoyama, S. (2004) Protein Sci. 13, 2089-2100
15. Pereira, C. M., Sattlegger, E., Jiang, H. Y., Longo, B. M., Jaqueta, C. B., Hinnebusch, A. G., Wek, R. C., Mello, L. E., and Castilho, B. A. (2005) J. Biol. Chem. 280, 28316-28323
16. Bittencourt, S., Pereira, C. M., Avedissian, M., Delamano, A., Mello, L. E., and Castilho, B. A. (2008) J. Comp. Neurol. 507, 1811-1830
17. Hagiwara, Y., Hirai, M., Nishiyama, K., Kanazawa, I., Ueda, T., Sakaki, Y., and Ito, T. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 9249-9254
18. Sattlegger, E., Swanson, M. J., Ashcraft, E. A., Jennings, J. L., Fekete, R. A., Link, A. J., and Hinnebusch, A. G. (2004) J. Biol. Chem. 279, 29952-29962
19. Foiani, M., Cigan, A. M., Paddon, C. J., Harashima, S., and Hinnebusch, A. G. (1991) Mol. Cell. Biol. 11, 3203-3216
20. Güldener, U., Heck, S., Fielder, T., Beinhauer, J., and Hegemann, J. H. (1996) Nucleic Acids Res. 24, 2519-2524
21. Dever, T. E., Feng, L., Wek, R. C., Cigan, A. M., Donahue, T. F., and Hinnebusch, A. G. (1992) Cell 68, 585-596
22. Mulholland, J., Preuss, D., Moon, A., Wong, A., Drubin, D., and Botstein, D. (1994) J. Cell Biol. 125, 381-391
23. Sali, A., and Blundell, T. L. (1993) J. Mol. Biol. 234, 779-815
24. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. (2000) Nucleic Acids Res. 28, 235-242
25. Park, F., Gajiwala, K., Eroshkina, G., Furlong, E., He, D., Batiyenko, Y., Romero, R., Christopher, J., Badger, J., Hendle, J., Lin, J., Peat, T., and Buchanan, S. (2004) Proteins 55, 775-777
26. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990) J. Mol. Biol. 215, 403-410
27. Jones, D. T., Taylor, W. R., and Thornton, J. M. (1992) Nature 358, 86-89
28. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) Nucleic Acids Res. 25, 4876-4882
29. Bowie, J. U., Lüthy, R., and Eisenberg, D. (1991) Science 253, 164-170
30. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
31. Emsley, P., and Cowtan, K. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 2126-2132
32. Krissinel, E., and Henrick, K. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 2256-2268
33. Holm, L., and Sander, C. (1994) Proteins 19, 165-173
34. Murzin, A. G., Brenner, S. E., Hubbard, T., and Chothia, C. (1995) J. Mol. Biol. 247, 536-540
35. Orengo, C. A., Michie, A. D., Jones, S., Jones, D. T., Swindells, M. B., and Thornton, J. M. (1997) Structure 5, 1093-1108
36. Sonnhammer, E. L., Eddy, S. R., and Durbin, R. (1997) Proteins 28, 405-420
37. Cutler, P. (1996) in Protein Purification Protocols, Methods in Molecular Biology (Doonan, S., ed) Vol. 59, pp. 255-268, Humana Press Inc., Totowa, NJ
38. Kubota, H., Ota, K., Sakaki, Y., and Ito, T. (2001) J. Biol. Chem. 276, 17591-17596
39. Chen, Y. H., Yang, J. T., and Martinez, H. M. (1972) Biochemistry 11, 4120-4131
40. Ghaemmaghami, S., Huh, W. K., Bower, K., Howson, R. W., Belle, A., Dephoure, N., O'Shea, E. K., and Weissman, J. S. (2003) Nature 425, 737-741
41. Uetz, P., Giot, L., Cagney, G., Mansfield, T. A., Judson, R. S., Knight, J. R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., Qureshi-Emili, A., Li, Y., Godwin, B., Conover, D., Kalbfleisch, T., Vijayadamodar, G., Yang, M., Johnston, M., Fields, S., and Rothberg, J. M. (2000) Nature 403, 623-627
42. Gavin, A. C., Bösche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J. M., Michon, A. M., Cruciat, C. M., Remor, M., Höfert, C., Schelder, M., Brajenovic, M., Ruffner, H., Merino, A., Klein, K., Hudak, M., Dickson, D., Rudi, T., Gnau, V., Bauch, A., Bastuck, S., Huhse, B., Leutwein, C., Heurtier, M. A., Copley, R. R., Edelmann, A., Querfurth, E., Rybin, V., Drewes, G., Raida, M., Bouwmeester, T., Bork, P., Seraphin, B., Kuster, B., Neubauer, G., and Superti-Furga, G. (2002) Nature 415, 141-147
43. Gross, S. R., and Kinzy, T. G. (2007) Mol. Cell. Biol. 27, 1974-1989
44. Pittman, Y. R., Kandl, K., Lewis, M., Valente, L., and Kinzy, T. G. (2009) J. Biol. Chem. 284, 4739-4747
45. Kandl, K. A., Munshi, R., Ortiz, P. A., Andersen, G. R., Kinzy, T. G., and Adams, A. E. (2002) Mol. Genet. Genomics 268, 10-18
46. Munshi, R., Kandl, K. A., Carr-Schmid, A., Whitacre, J. L., Adams, A. E., and Kinzy, T. G. (2001) Genetics 157, 1425-1436
47. Gross, S. R., and Kinzy, T. G. (2005) Nat. Struct. Mol. Biol. 12, 772-778
48. Munn, A., and Sattlegger, E. (2009) Aust. Biochemist 40, 9-13
49. Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K. A., Tomita, M., Wanner, B. L., and Mori, H. (2006) Mol. Syst. Biol. 2, 2006.0008
50. Wout, P. K., Sattlegger, E., Sullivan, S. M., and Maddock, J. R. (2009) Eukaryot. Cell 8, 1061-1071
51. Kang, N., Chen, D., Wang, L., Duan, L., Liu, S., Tang, L., Liu, Q., Cui, L., and He, W. (2008) Cell. Mol. Immunol. 5, 333-339
52. Alves, V. S., and Castilho, B. A. (2005) Biochem. Biophys. Res. Commun. 332, 450-455
53. DeLano, W. L. (2002) The PyMOL Molecular Graphics System, DeLano Scientific LLC, San Carlos, CA