N-glycans of Phaeodactylum tricornutum diatom and functional characterization of its N-acetylglucosaminyltransferase I enzyme

Journal of Biological Chemistry

Volumn 286, Issue 8, 2011, Pages 6152-6164

  Baïet, Bérengère ^a   Burel, Carole ^a   Saint Jean, Bruno ^b   Louvet, Romain ^a   Menu Bouaouiche, Laurence ^a   Kiefer Meyer, Marie Christine ^a   Mathieu Rivet, Elodie ^a   Lefebvre, Thomas ^c   Castel, Hélène ^c   Carlier, Aude ^b,d   Cadoret, Jean Paul ^b   Lerouge, Patrice ^a   Bardor, Muriel ^a,e  

^a UNIVERSITÉ DE ROUEN   (France)

^b IFREMER   (France)

^c UNIVERSITÉ DE ROUEN   (France)

^d Algenics S A S   (France)

^e AGENCY FOR SCIENCE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

CHINESE HAMSTER OVARY; ENDOPLASMIC RETICULUM; FUNCTIONAL CHARACTERIZATION; GENE ENCODES; GLYCOSYL TRANSFERASE; MANNOSIDASE; MICRO-ALGAE; N-GLYCAN; N-GLYCANS; N-GLYCOSYLATION; N-LINKED GLYCANS; OLIGOSACCHARYLTRANSFERASE; PHAEODACTYLUM TRICORNUTUM; PROTEIN QUALITY CONTROL;

ENCODING (SYMBOLS); ESTERIFICATION; GAS CHROMATOGRAPHY; GENES; GLYCOSYLATION; PROTEINS;

QUALITY CONTROL;

ALPHA MANNOSIDASE; GLYCAN; GLYCOSYLTRANSFERASE; MANNOSE; N ACETYLGLUCOSAMINYLTRANSFERASE I; UNCLASSIFIED DRUG;

ALGAL GENETICS; ANIMAL CELL; ARTICLE; BIOINFORMATICS; CARBOHYDRATE ANALYSIS; CARBOHYDRATE SYNTHESIS; CHO CELL; CONTROLLED STUDY; DIATOM; GENE SEQUENCE; MUTANT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHAEODACTYLUM TRICORNUTUM; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; CHO CELLS; COMPUTATIONAL BIOLOGY; CRICETINAE; CRICETULUS; DIATOMS; ENDOPLASMIC RETICULUM; GENETIC COMPLEMENTATION TEST; GENOME-WIDE ASSOCIATION STUDY; GOLGI APPARATUS; HUMANS; MICE; MOLECULAR SEQUENCE DATA; MUTATION; N-ACETYLGLUCOSAMINYLTRANSFERASES; POLYSACCHARIDES; RECEPTORS, G-PROTEIN-COUPLED;

BACILLARIOPHYTA; CRICETULUS GRISEUS; EUKARYOTA; PHAEODACTYLUM TRICORNUTUM;

EID: 79953186622     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.175711     Document Type: Article

References (76)

1. Nelson, D. M., Treguer, P., Brzezinski, M. A., Leynaert, A., and Queguiner, B., (1995) Globalal. Biogeochem. Cycles 9, 359-372
2. Raven, J. A., and Waite, A. M. (2004) New Phytologist 162, 45-61
3. Bowler, C., Allen, A. E., Badger, J. H., Grimwood, J., Jabbari, K., Kuo, A., Maheswari, U., Martens, C., Maumus, F., Otillar, R. P., Rayko, E., Salamov, A., Vandepoele, K., Beszteri, B., Gruber, A., Heijde, M., Katinka, M., Mock, T., Valentin, K., Verret, F., Berges, J. A., Brownlee, C., Cadoret, J. P., Chiovitti, A., Choi, C. J., Coesel, S., De Martino, A., Detter, J. C., Durkin, C., Falciatore, A., Fournet, J., Haruta, M., Huysman, M. J., Jenkins, B. D., Jiroutova, K., Jorgensen, R. E., Joubert, Y., Kaplan, A., Kröger, N., Kroth, P. G., La Roche, J., Lindquist, E., Lommer, M., Martin- Jézéquel, V., Lopez, P. J., Lucas, S., Mangogna, M., McGinnis, K., Medlin, L. K., Montsant, A., Oudot-Le Secq, M. P., Napoli, C., Obornik, M., Parker, M. S., Petit, J. L., Porcel, B. M., Poulsen, N., Robison, M., Rychlewski, L., Rynearson, T. A., Schmutz, J., Shapiro, H., Siaut, M., Stanley, M., Sussman, M. R., Taylor, A. R., Vardi, A., von Dassow, P., Vyverman, W., Willis, A., Wyrwicz, L. S., Rokhsar, D. S., Weissenbach, J., Armbrust, E. V., Green, B. R., Van de Peer, Y., and Grigoriev, I. V. (2008) Nature 456, 239-244
4. Falciatore, A., and Bowler, C. (2002) Annu. Rev. Plant Biol. 53, 109-130
5. Scala, S., Carels, N., Falciatore, A., Chiusano, M. L., and Bowler, C. (2002) Plant Physiol. 129, 993-1002
6. Burda, P., and Aebi, M. (1999) Biochim. Biophys. Acta 1426, 239-257
7. Helenius, A., and Aebi, M. (2001) Science 291, 2364-2369
8. Schachter, H. (2009) Carbohydr. Res. 344, 1391-1396
9. Ioffe, E., and Stanley, P. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 728-732
10. Metzler, M., Gertz, A., Sarkar, M., Schachter, H., Schrader, J. W., and Marth, J. D. (1994) EMBO J. 13, 2056-2065
11. Sarkar, M., Leventis, P. A., Silvescu, C. I., Reinhold, V. N., Schachter, H., and Boulianne, G. L. (2006) J. Biol. Chem. 281, 12776-12785
12. von Schaewen, A., Sturm, A., O'Neill, J., and Chrispeels, M. J. (1993) Plant Physiol. 102, 1109-1118
13. Kang, J. S., Frank, J., Kang, C. H., Kajiura, H., Vikram, M., Ueda, A., Kim, S., Bahk, J. D., Triplett, B., Fujiyama, K., Lee, S. Y., von Schaewen, A., and Koiwa, H. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 5933-5938
14. von Schaewen, A., Frank, J., and Koiwa, H. (2008) Plant Signal Behav. 3, 871-873
15. Frank, J., Kaulfürst-Soboll, H., Rips, S., Koiwa, H., and von Schaewen, A. (2008) Plant Physiol. 148, 1354-1367
16. Stanley, P., Narasimhan, S., Siminovitch, L., and Schachter, H. (1975) Proc. Natl. Acad. Sci. U.S.A. 72, 3323-3327
17. Dereeper, A., Guignon, V., Blanc, G., Audic, S., Buffet, S., Chevenet, F., Dufayard, J. F., Guindon, S., Lefort, V., Lescot, M., Claverie, J. M., and Gascuel, O. (2008) Nucleic Acids Res. 36, W465-W469
18. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680
19. Castresana, J. (2000) Mol. Biol. Evol. 17, 540-552
20. Guindon, S., and Gascuel, O. (2003) Syst. Biol. 52, 696-704
21. Anisimova, M., and Gascuel, O. (2006) Syst. Biol. 55, 539-552
22. Chevenet, F., Brun, C., Bañuls, A. L., Jacq, B., and Christen, R. (2006) BMC Bioinformatics 7, 439
23. Cantarel, B. L., Coutinho, P. M., Rancurel, C., Bernard, T., Lombard, V., and Henrissat, B. (2009) Nucleic Acids Res. 37, D233-D238
24. Walne, P. R. (1966) Fisheries Invest. 2, 1-52
25. Bougaran, G., Le Dean, L., Lukomska, E., Kaas, R., and Baron, R. (2003) Aquat. Living Resour. 16, 389-394
26. Siaut, M., Heijde, M., Mangogna, M., Montsant, A., Coesel, S., Allen, A., Manfredonia, A., Falciatore, A., and Bowler, C. (2007) Gene 406, 23-35
27. Chung, C. C., Hwang, S. P., and Chang, J. (2005) Appl. Environ Microbiol. 71, 8744-8751
28. Kang, L. K., Hwang, S. P. L., Lin, H. J., Chen, P. C., and Chang, J. (2009) J. Phycol. 45, 864-872
29. Livak, K. J., and Schmittgen, T. D. (2001) Methods 25, 402-408
30. Falciatore, A., Casotti, R., Leblanc, C., Abrescia, C., and Bowler, C. (1999) Mar. Biotechnol. 1, 239-251
31. Fitchette, A. C., Tran Dinh, O., Faye, L., and Bardor, M. (2007) Methods Mol. Biol. 355, 317-342
32. Faye, L., Gomord, V., Fitchette-Lainé, A. C., and Chrispeels, M. J. (1993) Anal. Biochem. 209, 104-108
33. Fitchette-Lainé, A. C., Denmat, L. A., Lerouge, P., and Faye, L. (1998) Methods Biotechnol. 3, 271-290
34. Bardor, M., Loutelier-Bourhis, C., Paccalet, T., Cosette, P., Fitchette, A. C., Vézina, L. P., Trépanier, S., Dargis, M., Lemieux, R., Lange, C., Faye, L., and Lerouge, P. (2003) Plant Biotechnol. J. 1, 451-462
35. Bardor, M., Nguyen, D. H., Diaz, S., and Varki, A. (2005) J. Biol. Chem. 280, 4228-4237
36. Hara, S., Yamaguchi, M., Takemori, Y., Furuhata, K., Ogura, H., and Nakamura, M. (1989) Anal. Biochem. 179, 162-166
37. Klein, A., Diaz, S., Ferreira, I., Lamblin, G., Roussel, P., and Manzi, A. E. (1997) Glycobiology 7, 421-432
38. Tretter, V., Altmann, F., and März, L. (1991) Eur. J. Biochem. 199, 647-652
39. Bakker, H., Bardor, M., Molthoff, J. W., Gomord, V., Elbers, I., Stevens, L. H., Jordi, W., Lommen, A., Faye, L., Lerouge, P., and Bosch, D. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 2899-2904
40. Bigge, J. C., Patel, T. P., Bruce, J. A., Goulding, P. N., Charles, S. M., and Parekh, R. B. (1995) Anal. Biochem. 230, 229-238
41. Séveno, M., Cabrera, G., Triguero, A., Burel, C., Leprince, J., Rihouey, C., Vézina, L. P., D'Aoust, M. A., Rudd, P. M., Royle, L., Dwek, R. A., Harvey, D. J., Lerouge, P., Cremata, J. A., and Bardor, M. (2008) Anal. Biochem. 379, 66-72
42. Weerapana, E., and Imperiali, B. (2006) Glycobiology 16, 91R-101R
43. Yan, Q., and Lennarz, W. J. (2002) J. Biol. Chem. 277, 47692-47700
44. Feng, J., Romaniouk, A. V., Samal, S. K., and Vijay, I. K. (2004) Glycobiology 14, 909-921
45. Wilkinson, B. M., Purswani, J., and Stirling, C. J. (2006) J. Biol. Chem. 281, 6325-6333
46. Kwiatkowski, B. A., Zielińska-Kwiatkowska, A. G., Migdalski, A., Kleczkowski, L. A., and Wasilewska, L. D. (1995) Gene 165, 219-222
47. Matsushima, R., Kondo, M., Nishimura, M., and Hara-Nishimura, I. (2003) Plant J. 33, 493-502
48. Pagny, S., Denmat-Ouisse, L. A., Gomord, V., and Faye, L. (2003) Plant Cell Physiol. 44, 173-182
49. Gnanasambandam, A., Polkinghorne, I. G., and Birch, R. G. (2007) Plant Biotechnol. J. 5, 290-296
50. Liebminger, E., Hüttner, S., Vavra, U., Fischl, R., Schoberer, J., Grass, J., Blaukopf, C., Seifert, G. J., Altmann, F., Mach, L., and Strasser, R. (2009) Plant Cell 21, 3850-3867
51. Kajiura, H., Koiwa, H., Nakazawa, Y., Okazawa, A., Kobayashi, A., Seki, T., and Fujiyama, K. (2010) Glycobiology 20, 235-247
52. Tempel, W., Karaveg, K., Liu, Z. J., Rose, J., Wang, B. C., and Moremen, K. W. (2004) J. Biol. Chem. 279, 29774-29786
53. Schoberer, J., Vavra, U., Stadlmann, J., Hawes, C., Mach, L., Steinkellner, H., and Strasser, R. (2009) Traffic 10, 101-115
54. Unligil, U. M., Zhou, S., Yuwaraj, S., Sarkar, M., Schachter, H., and Rini, J. M. (2000) EMBO J. 19, 5269-5280
55. Gordon, R. D., Sivarajah, P., Satkunarajah, M., Ma, D., Tarling, C. A., Vizitiu, D., Withers, S. G., and Rini, J. M. (2006) J. Mol. Biol. 360, 67-79
56. Guex, N., and Peitsch, M. C. (1997) Electrophoresis 18, 2714-2723
57. Gouet, P., Courcelle, E., Stuart, D. I., and Métoz, F. (1999) Bioinformatics 15, 305-308
58. Strasser, R., Stadlmann, J., Svoboda, B., Altmann, F., Glössl, J., and Mach, L. (2005) Biochem. J. 387, 385-391
59. Strasser, R., Schoberer, J., Jin, C., Glössl, J., Mach, L., and Steinkellner, H. (2006) Plant J. 45, 789-803
60. van den Elsen, J. M., Kuntz, D. A., and Rose, D. R. (2001) EMBO J. 20, 3008-3017
61. Breton, C., and Imberty, A. (1999) Curr. Opin. Struct. Biol. 9, 563-571
62. Oriol, R., Mollicone, R., Cailleau, A., Balanzino, L., and Breton, C. (1999) Glycobiology 9, 323-334
63. Bakker, H., Schijlen, E., de Vries, T., Schiphorst, W. E., Jordi, W., Lommen, A., Bosch, D., and van Die, I. (2001) FEBS Lett. 507, 307-312
64. Wilson, I. B., Rendić, D., Freilinger, A., Dumić, J., Altmann, F., Mucha, J., Müller, S., and Hauser, M. T. (2001) Biochim. Biophys. Acta 1527, 88-96
65. Fabini, G., Freilinger, A., Altmann, F., and Wilson, I. B. (2001) J. Biol. Chem. 276, 28058-28067
66. Holmes, E. H., Yen, T. Y., Thomas, S., Joshi, R., Nguyen, A., Long, T., Gallet, F., Maftah, A., Julien, R., and Macher, B. A. (2000) J. Biol. Chem. 275, 24237-24245
67. Strasser, R., Mucha, J., Mach, L., Altmann, F., Wilson, I. B., Glössl, J., and Steinkellner, H. (2000) FEBS Lett. 472, 105-108
68. Pagny, S., Bouissonnie, F., Sarkar, M., Follet-Gueye, M. L., Driouich, A., Schachter, H., Faye, L., and Gomord, V. (2003) Plant J. 33, 189-203
69. Faye, L., and Chrispeels, M. J. (1985) Anal. Biochem. 149, 218-224
70. Varki, A., Cummings, R. D., Esko, J. D., Freeze, H. H., Stanley, P., Marth, J. D., Bertozzi, C. R., Hart, G. W., and Etzler, M. E. (2009) Proteomics 9, 5398-5399
71. Banerjee, S., Vishwanath, P., Cui, J., Kelleher, D. J., Gilmore, R., Robbins, P. W., and Samuelson, J. (2007) Proc. Natl. Acad. Sci. U.S.A. 104, 11676-11681
72. Altmann, F., Schwihla, H., Staudacher, E., Glössl, J., and März, L. (1995) J. Biol. Chem. 270, 17344-17349
73. Zhang, W., Cao, P., Chen, S., Spence, A. M., Zhu, S., Staudacher, E., and Schachter, H. (2003) Biochem. J. 372, 53-64
74. Vitale, A., and Chrispeels, M. J. (1984) J. Cell Biol. 99, 133-140
75. Léonard, R., Rendic, D., Rabouille, C., Wilson, I. B., Préat, T., and Altmann, F. (2006) J. Biol. Chem. 281, 4867-4875
76. Geisler, C., Aumiller, J. J., and Jarvis, D. L. (2008) J. Biol. Chem. 283, 11330-11339