Structure of mouse Golgi α-mannosidase IA reveals the molecular basis for substrate specificity among Class 1 (family 47 glycosylhydrolase) α1,2-mannosidases

Journal of Biological Chemistry

Volumn 279, Issue 28, 2004, Pages 29774-29786

  Tempel, Wolfram ^a   Karaveg, Khanita ^a,b   Liu, Zhi Jie ^a   Rose, John ^a   Wang, Bi Cheng ^a   Moremen, Kelley W ^a,b  

^a University of Georgia ^*  (United States)

^b UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATES; CRYSTAL LATTICES; DEGRADATION; ENZYMES; HYDROLYSIS; MOLECULAR STRUCTURE;

ENDOPLASMIC RETICULUM (ER); GOLGI COMPLEX;

BIOCHEMISTRY;

ALPHA MANNOSIDASE; ALPHA MANNOSIDASE IA; ASPARAGINE; CALCIUM ION; GLYCOPROTEIN; HYDROLASE; OLIGOSACCHARIDE; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; CRYSTALLIZATION; ENDOPLASMIC RETICULUM; ENZYME ACTIVE SITE; ENZYME CONFORMATION; ENZYME ISOLATION; ENZYME LOCALIZATION; ENZYME SPECIFICITY; ENZYME STRUCTURE; ENZYME SUBSTRATE COMPLEX; GOLGI COMPLEX; HYDROLYSIS; MOLECULAR RECOGNITION; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN FAMILY; PROTEIN FOLDING; SACCHAROMYCES CEREVISIAE;

ALPHA-MANNOSIDASE; AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CARBOHYDRATE CONFORMATION; CARBOHYDRATE SEQUENCE; CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; ENDOPLASMIC RETICULUM; GOLGI APPARATUS; HUMANS; MICE; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; OLIGOSACCHARIDES; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; SUBSTRATE SPECIFICITY;

MAMMALIA; MURINAE; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 3142713181     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M403065200     Document Type: Article

References (59)

1. Moremen, K. (2000) in Oligosaccharides in Chemistry and Biology: A Comprehensive Handbook (Ernst, B., Hart, G., and Sinay, P., eds) Vol. II, pp. 81-117, John Wiley and Sons, Inc., New York
2. Kornfeld, R., and Kornfeld, S. (1985) Annu. Rev. Biochem. 54, 631-664
3. Herscovics, A. (1999) Biochim. Biophys. Acta 1426, 275-285
4. Herscovics, A. (1999) in Comprehensive Natural Products Chemistry (Pinto, B. M., ed) Vol. 3, pp. 13-35, Elsevier, New York
5. Herscovics, A. (1999) Biochim. Biophys. Acta 1473, 96-107
6. Moremen, K. W., Trimble, R. B., and Herscovics, A. (1994) Glycobiology 4, 113-125
7. Daniel, P. F., Winchester, B., and Warren, C. D. (1994) Glycobiology 4, 551-566
8. Oda, Y., Hosokawa, N., Wada, I., and Nagata, K. (2003) Science 299, 1394-1397
9. Hosokawa, N., Wada, I., Hasegawa, K., Yorihuzi, T., Tremblay, L. O., Herscovics, A., and Nagata, K. (2001) EMBO Rep. 2, 415-422
10. Nakatsukasa, K., Nishikawa, S., Hosokawa, N., Nagata, K., and Endo, T. (2001) J. Biol. Chem. 276, 8635-8638
11. Jakob, C. A., Burda, P., Roth, J., and Aebi, M. (1998) J. Cell Biol. 142, 1223-1233
12. Jakob, C. A., Bodmer, D., Spirig, U., Battig, P., Marcil, A., Dignard, D., Bergeron, J. J., Thomas, D. Y., and Aebi, M. (2001) EMBO Rep. 2, 423-430
13. Wang, T., and Hebert, D. N. (2003) Nat. Struct. Biol. 10, 319-321
14. Cabral, C. M., Choudhury, P., Liu, Y., and Sifers, R. N. (2000) J. Biol. Chem. 275, 25015-25022
15. Wu, Y., Swulius, M. T. Moremen, K. W., and Sifers, R. N. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 8229-8234
16. Hosokawa, N., Tremblay, L. O., You, Z., Herscovics, A., Wada, I., and Nagata, K. (2003) J. Biol. Chem. 278, 26287-26294
17. Frenkel, Z., Gregory, W., Kornfeld, S., and Lederkremer, G. Z. (2003) J. Biol. Chem. 278, 34119-34124
18. Ermonval, M., Kitzmuller, C., Mir, A. M., Cacan, R., and Ivessa, N. E. (2001) Glycobiology 11, 565-576
19. Kitzmuller, C., Caprini, A., Moore, S. E., Frenoy, J. P., Schwaiger, E., Kellermann, O., Ivessa, N. E., and Ermonval, M. (2003) Biochem. J. 376, 687-696
20. Lipari, F., and Herscovics, A. (1994) Glycobiology 4, 697-702
21. Puccia, R., Grondin, B., and Herscovics, A. (1993) Biochem. J. 290, 21-26
22. Ziegler, F. D., and Trimble, R. B. (1991) Glycobiology 1, 605-614
23. Lal, A., Pang, P., Kalelkar, S., Romero, P. A., Herscovics, A., and Moremen, K. W. (1998) Glycobiology 8, 981-995
24. Tremblay, L. O., Campbell Dyke, N., and Herscovics, A. (1998) Glycobiology 8, 585-595
25. Vallee, F., Karaveg, K., Herscovics, A., Moremen, K. W., and Howell, P. L. (2000) J. Biol. Chem. 275, 41287-41298
26. Davies, G. J., Wilson, K. S., and Henrissat, B. (1997) Biochem. J. 321, 557-559
27. Vallee, F., Lipari, F., Yip, P., Sleno, B., Herscovics, A., and Howell, P. L. (2000) EMBO J. 19, 581-588
28. Romero, P. A., Vallee, F., Howell, P. L., and Herscovics, A. (2000) J. Biol. Chem. 275, 11071-11074
29. Van Petegem, F., Contreras, H., Contreras, R., and Van Beeumen, J. (2001) J. Mol. Biol. 312, 157-165
30. Lobsanov, Y. D., Vallee, F., Imberty, A., Yoshida, T., Yip, P., Herscovics, A., and Howell, P. L. (2002) J. Biol. Chem. 277, 5620-5630
31. Lal, A., Schutzbach, J. S., Forsee, W. T., Neame, P. J., and Moremen, K. W. (1994) J. Biol. Chem. 269, 9872-9881
32. Vallee, F., Lal, A., Moremen, K. W., and Howell, P. L. (1999) Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 571-573
33. Cregg, J. M., Vedvick, T. S., and Raschke, W. C. (1993) Bio/Technology 11, 905-910
34. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. D Biol. Crystallogr. 54, 905-921
35. Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Nat. Struct. Biol. 6, 458-463
36. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165
37. Murshudov, G. N., Vagin, A. A., Lebedev, A. Wilson, K. S., and Dodson, E. J. (1999) Acta Crystallogr. D Biol. Crystallogr. 55, 247-255
38. Winn, M. D., Ashton, A. W., Briggs, P. J., Ballard, C. C., and Patel, P. (2002) Acta. Crystallogr. D Biol. Crystallogr. 58, 1929-1936
39. Engh, R. A., and Huber, R. (1991) Acta Crystallogr. A 47, 392-400
40. Guex, N., and Peitsch, M. C. (1997) Electrophoresis 18, 2714-2723
41. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680
42. Vuillard, L., Rabilloud, T., and Goldberg, M. E. (1998) Eur. J. Biochem. 256, 128-135
43. Goldberg, M. E., Expert-Bezancon, N., Vuillard, L., and Rabilloud, T. (1995) Fold. Des. 1, 21-27
44. Vuillard, L., Madern, D., Franzetti, B., and Rabilloud, T. (1995) Anal. Biochem. 230, 290-294
45. Vuillard, L., Marret, N., and Rabilloud, T. (1995) Electrophoresis 16, 295-297
46. Gouet, P., Courcelle E., Stuart, D. I., and Metoz, F. (1999) Bioinformatics 15, 305-308
47. Vuillard, L., Braun-Breton, C., and Rabilloud, T. (1995) Biochem. J. 305, 337-343
48. Vuillard, L., Rabilloud, T., Leberman, R., Berthet-Colominas, C., and Cusack, S. (1994) FEBS Lett. 353, 294-296
49. Herscovics, A., Lipari, F., Sleno, B., Romero, P. A., Vallee, F., Yip, P., and Howell, P. L. (2002) in Carbohydrate Bioengineering: Interdisciplinary Approaches (Teeri, T. T., Svensson, B., Gilbert, H. J., and Feizi, T., eds) pp. 28-33, The Royal Society of Chemistry, Cambridge, UK
50. Gemmill, T. R., and Trimble, R. B. (1999) Biochim. Biophys. Acta 1426, 227-237
51. Trimble, R. B., Atkinson, P. H., Tschopp, J. F., Townsend, R. R., and Maley, F. (1991) J. Biol. Chem. 266, 22807-22817
52. Lipari, F., Gour-Salin, B. J., and Herscovics, A. (1995) Biochem. Biophys. Res. Commun. 209, 322-326
53. Bause, E., Breuer, W., Schweden, J., Roeser, R., and Geyer, R. (1992) Eur. J. Biochem. 208, 451-457
54. Herscovics, A., Schneikert, J., Athanassiadis, A., and Moremen, K. W. (1994) J. Biol. Chem. 269, 9864-9871
55. Yoshida, T., Nakajima, T., and Ichishima, E. (1998) Biosci. Biotechnol. Biochem. 62, 309-315
56. Ichishima, E., Taya, N., Ikeguchi, M., Chiba, Y., Nakamura, M., Kawabata, C., Inoue, T., Takahashi, K., Minetoki, T., Ozeki, K., Kumagai, C., Gomi, K., Yoshida, T., and Nakajima, T. (1999) Biochem. J. 339, 589-597
57. Molinari, M., Calanca, V., Galli, C., Lucca, P., and Paganetti, P. (2003) Science 299, 1397-1400
58. Gonzalez, D. S., Karaveg, K., Vandersall-Nairn, A. S., Lal, A., and Moremen, K. W. (1999) J. Biol. Chem. 274, 21375-21386
59. Herscovics, A., Romero, P. A., and Tremblay, L. O. (2002) Glycobiology 12, 14G-15G