-
1
-
-
8844227502
-
Population history and natural selection shape patterns of genetic variation in 132 genes
-
AKEY, J. M., M. A. EBERLE, M. J. RIEDER, C. S.CARLSON, M.D. SHRIVER et al., 2004 Population history and natural selection shape patterns of genetic variation in 132 genes. PLoS Biol. 2: e286.
-
(2004)
PLoS Biol.
, vol.2
-
-
Akey, J.M.1
Eberle, M.A.2
Rieder, M.J.3
Carlson, C.S.4
Shriver, M.D.5
-
2
-
-
75749154475
-
Tracking footprints of artificial selection in the dog genome
-
AKEY, J. M., A. L. RUHE, D. T. AKEY, A. K. WONG, C. F. CONNELLY et al., 2010 Tracking footprints of artificial selection in the dog genome. Proc. Natl. Acad. Sci. USA 107: 1160-1165.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 1160-1165
-
-
Akey, J.M.1
Ruhe, A.L.2
Akey, D.T.3
Wong, A.K.4
Connelly, C.F.5
-
3
-
-
0029036829
-
The hitchhiking effect on the site frequency spectrum of DNA polymorphisms
-
BRAVERMAN, J. M., R. R. HUDSON, N. L. KAPLAN, C. H. LANGLEY and W. STEPHAN, 1995 The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics 140: 783-796.
-
(1995)
Genetics
, vol.140
, pp. 783-796
-
-
Braverman, J.M.1
Hudson, R.R.2
Kaplan, N.L.3
Langley, C.H.4
Stephan, W.5
-
4
-
-
77956800100
-
A simple genetic architecture underlies morphological variation in dogs
-
BOYKO, A. R., P. QUIGNON, L. LI, J. J. SCHOENEBECK, J.D.DEGENHARDT et al., 2010 A simple genetic architecture underlies morphological variation in dogs. PLoS Biol. 8: e1000451.
-
(2010)
PLoS Biol.
, vol.8
-
-
Boyko, A.R.1
Quignon, P.2
Li, L.3
Schoenebeck, J.J.4
Degenhardt, J.D.5
-
5
-
-
76249102674
-
Genome-wide patterns of population structure and admixture in West Africans and African Americans
-
BRYC, K., A. AUTON, M. R. NELSON, J. R. OKSENBERG, S. L. HAUSER et al., 2010 Genome-wide patterns of population structure and admixture in West Africans and African Americans. Proc. Natl. Acad. Sci. USA 107: 786-791.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 786-791
-
-
Bryc, K.1
Auton, A.2
Nelson, M.R.3
Oksenberg, J.R.4
Hauser, S.L.5
-
6
-
-
27544482154
-
Genomic regions exhibiting positive selection identified from dense genotype data
-
CARLSON, C. S., D. J. THOMAS, M. A. EBERLE, J. E. SWANSON, R. J. LIVINGSTON et al., 2005 Genomic regions exhibiting positive selection identified from dense genotype data. Genome Res. 15: 1553-1565.
-
(2005)
Genome Res.
, vol.15
, pp. 1553-1565
-
-
Carlson, C.S.1
Thomas, D.J.2
Eberle, M.A.3
Swanson, J.E.4
Livingston, R.J.5
-
7
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
CHIMPANZEE SEQUENCING and ANALYSIS CONSORTIUM
-
CHIMPANZEE SEQUENCING and ANALYSIS CONSORTIUM, 2005 Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437: 69-87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
-
8
-
-
67651015954
-
The role of geography in human adaptation
-
COOP, G., J. K. PICKRELL, J. NOVEMBRE, S. KUDARAVALLI, J. LI et al., 2009 The role of geography in human adaptation. PLoS Genet. 5: e1000500.
-
(2009)
PLoS Genet.
, vol.5
-
-
Coop, G.1
Pickrell, J.K.2
Novembre, J.3
Kudaravalli, S.4
Li, J.5
-
9
-
-
0041817568
-
Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
-
FALUSH, D., M. STEPHENS and J. K. PRITCHARD, 2003 Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
-
(2003)
Genetics
, vol.164
, pp. 1567-1587
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.K.3
-
10
-
-
0033911640
-
Hitchhiking under positive Darwinian selection
-
FAY, J. C., and C. I. WU, 2000 Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
-
(2000)
Genetics
, vol.155
, pp. 1405-1413
-
-
Fay, J.C.1
Wu, C.I.2
-
11
-
-
0027453041
-
Statistical tests of neutrality of mutations
-
FU, Y. X., and W. H. LI, 1993 Statistical tests of neutrality of mutations. Genetics 133: 693-709.
-
(1993)
Genetics
, vol.133
, pp. 693-709
-
-
Fu, Y.X.1
Li, W.H.2
-
12
-
-
76749155514
-
A composite of multiple signals distinguishes causal variants in regions of positive selection
-
GROSSMAN, S. R., I. SHYLAKHTER, E. K. KARLSSON, E. H. BYRNE, S. MORALES et al., 2010 A composite of multiple signals distinguishes causal variants in regions of positive selection. Science 327: 883-886.
-
(2010)
Science
, vol.327
, pp. 883-886
-
-
Grossman, S.R.1
Shylakhter, I.2
Karlsson, E.K.3
Byrne, E.H.4
Morales, S.5
-
13
-
-
73449149044
-
Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
-
GUTENKUNST, R. N., R. D. HERNANDEZ, S. H. WILLIAMSON and C. D. BUSTAMANTE, 2009 Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet. 5: e1000695.
-
(2009)
PLoS Genet.
, vol.5
-
-
Gutenkunst, R.N.1
Hernandez, R.D.2
Williamson, S.H.3
Bustamante, C.D.4
-
14
-
-
18844439645
-
Soft sweeps: Molecular population genetics of adaptation from standing genetic variation
-
HERMISSON, J., and P. S. PENNINGS, 2005 Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics 169: 2335-2352.
-
(2005)
Genetics
, vol.169
, pp. 2335-2352
-
-
Hermisson, J.1
Pennings, P.S.2
-
15
-
-
56649111423
-
A flexible forward simulator for populations subject to selection and demography
-
HERNANDEZ, R. D., 2008 A flexible forward simulator for populations subject to selection and demography. Bioinformatics 24: 2786-2787.
-
(2008)
Bioinformatics
, vol.24
, pp. 2786-2787
-
-
Hernandez, R.D.1
-
16
-
-
34547808850
-
Context dependence, ancestral misidentification, and spurious signatures of natural selection
-
HERNANDEZ, R. D., S. H. WILLIAMSON and C. D. BUSTAMANTE, 2007a Context dependence, ancestral misidentification, and spurious signatures of natural selection. Mol. Biol. Evol. 24: 1792-1800.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1792-1800
-
-
Hernandez, R.D.1
Williamson, S.H.2
Bustamante, C.D.3
-
17
-
-
34548739973
-
Context-dependent mutation rates may cause spurious signatures of a fixation bias favoring higher GC-content in humans
-
HERNANDEZ, R. D., S. H.WILLIAMSON, L. ZHU and C. D. BUSTAMANTE, 2007b Context-dependent mutation rates may cause spurious signatures of a fixation bias favoring higher GC-content in humans. Mol. Biol. Evol. 24: 2196-2202.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 2196-2202
-
-
Hernandez, R.D.1
Williamson, S.H.2
Zhu, L.3
Bustamante, C.D.4
-
18
-
-
37249031330
-
Sequence-level population simulations over large genomic regions
-
HOGGART, C. J., M. CHADEAU-HYAM, T. G. CLARK, R. LAMPARIELLO, J. C. WHITTAKER et al., 2007 Sequence-level population simulations over large genomic regions. Genetics 177: 1725-1731.
-
(2007)
Genetics
, vol.177
, pp. 1725-1731
-
-
Hoggart, C.J.1
Chadeau-Hyam, M.2
Clark, T.G.3
Lampariello, R.4
Whittaker, J.C.5
-
19
-
-
0020744702
-
Properties of a neutral allele model with intragenic recombination
-
HUDSON, R. R., 1983 Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 23: 183-201.
-
(1983)
Theor. Popul. Biol.
, vol.23
, pp. 183-201
-
-
Hudson, R.R.1
-
20
-
-
0000601292
-
The how and why of generating gene genealogies
-
edited by N. TAKAHATA and A. G. CLARK. Sinauer Associates, Sunderland, MA
-
HUDSON, R. R., 1993 The how and why of generating gene genealogies, pp. 23-36 in Mechanisms of Molecular Evolution, edited by N. TAKAHATA and A. G. CLARK. Sinauer Associates, Sunderland, MA.
-
(1993)
Mechanisms of Molecular Evolution
, pp. 23-36
-
-
Hudson, R.R.1
-
21
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
HUDSON, R. R., 2002 Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
22
-
-
0028215929
-
Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster
-
HUDSON, R. R., K. BAILEY, D. SKARECKY, J. KWIATOWSKI and F. J. AYALA, 1994 Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster. Genetics 136: 1329-1340.
-
(1994)
Genetics
, vol.136
, pp. 1329-1340
-
-
Hudson, R.R.1
Bailey, K.2
Skarecky, D.3
Kwiatowski, J.4
Ayala, F.J.5
-
23
-
-
3242714766
-
Pattern of polymorphism after strong artificial selection in a domestication event
-
INNAN, H., and Y. KIM, 2004 Pattern of polymorphism after strong artificial selection in a domestication event. Proc. Natl. Acad. Sci. USA 101: 10667-10672.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10667-10672
-
-
Innan, H.1
Kim, Y.2
-
24
-
-
52049093163
-
Detecting local adaptation using the joint sampling of polymorphism data in the parental and derived populations
-
INNAN, H., and Y. KIM, 2008 Detecting local adaptation using the joint sampling of polymorphism data in the parental and derived populations. Genetics 179: 1713-1720.
-
(2008)
Genetics
, vol.179
, pp. 1713-1720
-
-
Innan, H.1
Kim, Y.2
-
25
-
-
17444365737
-
Statistical tests of the coalescent model based on the haplotype frequency distribution and the number of segregating sites
-
INNAN, H., K. ZHANG, P.MARJORAM, S. TAVARÉ and N. A. ROSENBERG, 2005 Statistical tests of the coalescent model based on the haplotype frequency distribution and the number of segregating sites. Genetics 169: 1763-1777.
-
(2005)
Genetics
, vol.169
, pp. 1763-1777
-
-
Innan, H.1
Zhang, K.2
Marjoram, P.3
Tavaré, S.4
Rosenberg, N.A.5
-
26
-
-
23344438911
-
Distinguishing between selective sweeps and demography using DNA polymorphism data
-
JENSEN, J. D., Y. KIM, V. B. DUMONT, C. F. AQUADRO and C. D. BUSTAMANTE, 2005 Distinguishing between selective sweeps and demography using DNA polymorphism data. Genetics 170: 1401-1410.
-
(2005)
Genetics
, vol.170
, pp. 1401-1410
-
-
Jensen, J.D.1
Kim, Y.2
Dumont, V.B.3
Aquadro, C.F.4
Bustamante, C.D.5
-
27
-
-
33749410295
-
Inference of population genetic parameters in metagenomics: A clean look at messy data
-
JOHNSON, P. L., and M. SLATKIN, 2006 Inference of population genetic parameters in metagenomics: a clean look at messy data. Genome Res. 16: 1320-1327.
-
(2006)
Genome Res.
, vol.16
, pp. 1320-1327
-
-
Johnson, P.L.1
Slatkin, M.2
-
29
-
-
34748819978
-
Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans
-
KEINAN, A., J. C. MULLIKIN, N. PATTERSON and D. REICH, 2007 Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans. Nat. Genet. 39: 1251-1255.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1251-1255
-
-
Keinan, A.1
Mullikin, J.C.2
Patterson, N.3
Reich, D.4
-
30
-
-
33746693757
-
Genomic signatures of positive selection in humans and the limits of outlier approaches
-
KELLEY, J. L., J. MADEOY, J. C. CALHOUN, W. SWANSON and J. M. AKEY, 2006 Genomic signatures of positive selection in humans and the limits of outlier approaches. Genome Res. 16: 980-989.
-
(2006)
Genome Res.
, vol.16
, pp. 980-989
-
-
Kelley, J.L.1
Madeoy, J.2
Calhoun, J.C.3
Swanson, W.4
Akey, J.M.5
-
31
-
-
33645240963
-
Allele frequency distribution under recurrent selective sweeps
-
KIM, Y., 2006 Allele frequency distribution under recurrent selective sweeps. Genetics 172: 1967-1978.
-
(2006)
Genetics
, vol.172
, pp. 1967-1978
-
-
Kim, Y.1
-
32
-
-
0038192127
-
Selective sweeps in the presence of interference among partially linked loci
-
KIM, Y., and W. STEPHAN, 2003 Selective sweeps in the presence of interference among partially linked loci. Genetics 164: 389-398.
-
(2003)
Genetics
, vol.164
, pp. 389-398
-
-
Kim, Y.1
Stephan, W.2
-
33
-
-
33750491918
-
Inferring the demographic history and rate of adaptive substitution in Drosophila
-
LI, H., andW. STEPHAN, 2006 Inferring the demographic history and rate of adaptive substitution in Drosophila. PLoS Genet. 2: e166.
-
(2006)
PLoS Genet.
, vol.2
-
-
Li, H.1
Stephan, W.2
-
34
-
-
6344267228
-
Pattern of sequence variation across 213 environmental response genes
-
LIVINGSTON, R. J.,A. VON NIEDERHAUSERN, A. G. JEGGA, D. C. CRAWFORD, C. S. CARLSON et al., 2004 Pattern of sequence variation across 213 environmental response genes. Genome Res. 14: 1821-1831.
-
(2004)
Genome Res.
, vol.14
, pp. 1821-1831
-
-
Livingston, R.J.1
Von Niederhausern, A.2
Jegga, A.G.3
Crawford, D.C.4
Carlson, C.S.5
-
35
-
-
67749125023
-
Methods for human demographic inference using haplotype patterns from genome-wide single-nucleotide polymorphism data
-
LOHMUELLER, K. E., C. D. BUSTAMANTE and A. G. CLARK, 2009 Methods for human demographic inference using haplotype patterns from genome-wide single-nucleotide polymorphism data. Genetics 182: 217-231.
-
(2009)
Genetics
, vol.182
, pp. 217-231
-
-
Lohmueller, K.E.1
Bustamante, C.D.2
Clark, A.G.3
-
36
-
-
77955505802
-
The effect of recent admixture on inference of ancient human population history
-
LOHMUELLER, K. E., C. D. BUSTAMANTE and A. G. CLARK, 2010 The effect of recent admixture on inference of ancient human population history. Genetics 185: 611-622.
-
(2010)
Genetics
, vol.185
, pp. 611-622
-
-
Lohmueller, K.E.1
Bustamante, C.D.2
Clark, A.G.3
-
37
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
MAYNARD SMITH, J., and J. HAIGH, 1974 The hitch-hiking effect of a favourable gene. Genet. Res. 23: 23-35.
-
(1974)
Genet. Res.
, vol.23
, pp. 23-35
-
-
Maynard Smith, J.1
Haigh, J.2
-
38
-
-
29444452921
-
Molecular signatures of natural selection
-
NIELSEN, R., 2005 Molecular signatures of natural selection. Annu. Rev. Genet. 39: 197-218.
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
39
-
-
11244313872
-
Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data
-
NIELSEN, R., M. J. HUBISZ and A. G. CLARK, 2004 Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data. Genetics 168: 2373-2382.
-
(2004)
Genetics
, vol.168
, pp. 2373-2382
-
-
Nielsen, R.1
Hubisz, M.J.2
Clark, A.G.3
-
40
-
-
27544437635
-
Genomic scans for selective sweeps using SNP data
-
NIELSEN, R., S. WILLIAMSON, Y. KIM, M. J. HUBISZ, A. G. CLARK et al., 2005a Genomic scans for selective sweeps using SNP data. Genome Res. 15: 1566-1575.
-
(2005)
Genome Res.
, vol.15
, pp. 1566-1575
-
-
Nielsen, R.1
Williamson, S.2
Kim, Y.3
Hubisz, M.J.4
Clark, A.G.5
-
41
-
-
20444430245
-
A scan for positively selected genes in the genomes of humans and chimpanzees
-
NIELSEN, R.,C.BUSTAMANTE, A.G. CLARK, S. GLANOWSKI,T. B. SACKTON et al., 2005b A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol. 3: e170.
-
(2005)
PLoS Biol.
, vol.3
-
-
Nielsen, R.1
Bustamante, C.2
Clark, A.G.3
Glanowski, S.4
Sackton, T.B.5
-
42
-
-
35348988170
-
Recent and ongoing selection in the human genome
-
NIELSEN, R., I. HELLMANN, M. HUBISZ, C. BUSTAMANTE and A. G. CLARK, 2007 Recent and ongoing selection in the human genome. Nat. Rev. Genet. 8: 857-868.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 857-868
-
-
Nielsen, R.1
Hellmann, I.2
Hubisz, M.3
Bustamante, C.4
Clark, A.G.5
-
43
-
-
66049128908
-
Darwinian and demographic forces affecting human protein coding genes
-
NIELSEN, R., M. J. HUBISZ, I. HELLMANN, D. TORGERSON, A. M. ANDRES et al., 2009 Darwinian and demographic forces affecting human protein coding genes. Genome Res. 19: 838-849.
-
(2009)
Genome Res.
, vol.19
, pp. 838-849
-
-
Nielsen, R.1
Hubisz, M.J.2
Hellmann, I.3
Torgerson, D.4
Andres, A.M.5
-
44
-
-
2342622086
-
Methods for high-density admixture mapping of disease genes
-
PATTERSON, N., N. HATTANGADI, B. LANE, K. E. LOHMUELLER, D. A. HAFLER et al., 2004 Methods for high-density admixture mapping of disease genes. Am. J. Hum. Genet. 74: 979-1000.
-
(2004)
Am. J. Hum. Genet.
, vol.74
, pp. 979-1000
-
-
Patterson, N.1
Hattangadi, N.2
Lane, B.3
Lohmueller, K.E.4
Hafler, D.A.5
-
45
-
-
33845971545
-
Soft sweeps III: The signature of positive selection from recurrent mutation
-
PENNINGS, P. S., and J. HERMISSON, 2006a Soft sweeps III: the signature of positive selection from recurrent mutation. PLoS Genet. 2: e186.
-
(2006)
PLoS Genet.
, vol.2
-
-
Pennings, P.S.1
Hermisson, J.2
-
46
-
-
33646592536
-
Soft sweeps II - Molecular population genetics of adaptation from recurrent mutation or migration
-
PENNINGS, P. S., and J. HERMISSON, 2006b Soft sweeps II - molecular population genetics of adaptation from recurrent mutation or migration. Mol. Biol. Evol. 23: 1076-1084.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1076-1084
-
-
Pennings, P.S.1
Hermisson, J.2
-
47
-
-
0035163561
-
Population structure in admixed populations: Effect of admixture dynamics on the pattern of linkage disequilibrium
-
PFAFF, C. L., E. J. PARRA, C. BONILLA, K. HIESTER, P. M. MCKEIGUE et al., 2001 Population structure in admixed populations: effect of admixture dynamics on the pattern of linkage disequilibrium. Am. J. Hum. Genet. 68: 198-207.
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 198-207
-
-
Pfaff, C.L.1
Parra, E.J.2
Bonilla, C.3
Hiester, K.4
Mckeigue, P.M.5
-
48
-
-
66049157487
-
Signals of recent positive selection in a worldwide sample of human populations
-
PICKRELL, J. K., G. COOP, J. NOVEMBRE, S. KUDARAVALLI, J. Z. LI et al., 2009 Signals of recent positive selection in a worldwide sample of human populations. Genome Res. 19: 826-837.
-
(2009)
Genome Res.
, vol.19
, pp. 826-837
-
-
Pickrell, J.K.1
Coop, G.2
Novembre, J.3
Kudaravalli, S.4
Li, J.Z.5
-
49
-
-
28844443820
-
Selective sweep mapping of genes with large phenotypic effects
-
POLLINGER, J. P., C. D. BUSTAMANTE, A. FLEDEL-ALON, S. SCHMUTZ, M. M. GRAY et al., 2005 Selective sweep mapping of genes with large phenotypic effects. Genome Res. 15: 1809-1819.
-
(2005)
Genome Res.
, vol.15
, pp. 1809-1819
-
-
Pollinger, J.P.1
Bustamante, C.D.2
Fledel-Alon, A.3
Schmutz, S.4
Gray, M.M.5
-
50
-
-
67651225410
-
Sensitive detection of chromosomal segments of distinct ancestry in admixed populations
-
PRICE, A. L., A. TANDON, N. PATTERSON, K. C. BARNES, N. RAFAELS et al., 2009 Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet. 5: e1000519.
-
(2009)
PLoS Genet.
, vol.5
-
-
Price, A.L.1
Tandon, A.2
Patterson, N.3
Barnes, K.C.4
Rafaels, N.5
-
51
-
-
0036196885
-
The signature of positive selection at randomly chosen loci
-
PRZEWORSKI, M., 2002 The signature of positive selection at randomly chosen loci. Genetics 160: 1179-1189.
-
(2002)
Genetics
, vol.160
, pp. 1179-1189
-
-
Przeworski, M.1
-
52
-
-
28644440530
-
The signature of positive selection on standing genetic variation
-
PRZEWORSKI, M., G. COOP and J. D. WALL, 2005 The signature of positive selection on standing genetic variation. Evolution 59: 2312-2323.
-
(2005)
Evolution
, vol.59
, pp. 2312-2323
-
-
Przeworski, M.1
Coop, G.2
Wall, J.D.3
-
53
-
-
0037167852
-
Detecting recent positive selection in the human genome from haplotype structure
-
SABETI, P. C., D. E. REICH, J. M.HIGGINS, H. Z. LEVINE, D. J. RICHTER et al., 2002 Detecting recent positive selection in the human genome from haplotype structure. Nature 419: 832-837.
-
(2002)
Nature
, vol.419
, pp. 832-837
-
-
Sabeti, P.C.1
Reich, D.E.2
Higgins, J.M.3
Levine, H.Z.4
Richter, D.J.5
-
54
-
-
35349012592
-
Genome-wide detection and characterization of positive selection in human populations
-
SABETI, P. C., P. VARILLY, B. FRY, J. LOHMUELLER, E.HOSTETTER et al., 2007 Genome-wide detection and characterization of positive selection in human populations. Nature 449: 913-918.
-
(2007)
Nature
, vol.449
, pp. 913-918
-
-
Sabeti, P.C.1
Varilly, P.2
Fry, B.3
Lohmueller, J.4
Hostetter, E.5
-
55
-
-
41649121004
-
On the inference of ancestries in admixed populations
-
SANKARARAMAN, S., G. KIMMEL, E. HALPERIN and M. I. JORDAN, 2008a On the inference of ancestries in admixed populations. Genome Res. 18: 668-675.
-
(2008)
Genome Res.
, vol.18
, pp. 668-675
-
-
Sankararaman, S.1
Kimmel, G.2
Halperin, E.3
Jordan, M.I.4
-
56
-
-
40749114839
-
Estimating local ancestry in admixed populations
-
SANKARARAMAN, S., S. SRIDHAR, G. KIMMEL and E. HALPERIN, 2008b Estimating local ancestry in admixed populations. Am. J. Hum. Genet. 82: 290-303.
-
(2008)
Am. J. Hum. Genet.
, vol.82
, pp. 290-303
-
-
Sankararaman, S.1
Sridhar, S.2
Kimmel, G.3
Halperin, E.4
-
57
-
-
13744257634
-
Variation after a selective sweep in a subdivided population
-
SANTIAGO, E., and A. CABALLERO, 2005 Variation after a selective sweep in a subdivided population. Genetics 169: 475-483.
-
(2005)
Genetics
, vol.169
, pp. 475-483
-
-
Santiago, E.1
Caballero, A.2
-
58
-
-
3042616060
-
Putative ancestral origins of chromosomal segments in individual African Americans: Implications for admixture mapping
-
SELDIN, M. F., T. MORII, H. E. COLLINS-SCHRAMM, B. CHIMA, R. KITTLES et al., 2004 Putative ancestral origins of chromosomal segments in individual African Americans: implications for admixture mapping. Genome Res. 14: 1076-1084.
-
(2004)
Genome Res.
, vol.14
, pp. 1076-1084
-
-
Seldin, M.F.1
Morii, T.2
Collins-Schramm, H.E.3
Chima, B.4
Kittles, R.5
-
59
-
-
0029099781
-
Properties of statistical tests of neutrality for DNA polymorphism data
-
SIMONSEN, K. L., G. A. CHURCHILL and C. F. AQUADRO, 1995 Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141: 413-429.
-
(1995)
Genetics
, vol.141
, pp. 413-429
-
-
Simonsen, K.L.1
Churchill, G.A.2
Aquadro, C.F.3
-
60
-
-
0025951996
-
Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
-
SLATKIN, M., and R. R. HUDSON, 1991 Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129: 555-562.
-
(1991)
Genetics
, vol.129
, pp. 555-562
-
-
Slatkin, M.1
Hudson, R.R.2
-
61
-
-
0031825318
-
Genetic hitch-hiking in a subdivided population
-
SLATKIN, M., and T. WIEHE, 1998 Genetic hitch-hiking in a subdivided population. Genet. Res. 71: 155-160.
-
(1998)
Genet. Res.
, vol.71
, pp. 155-160
-
-
Slatkin, M.1
Wiehe, T.2
-
62
-
-
4644333804
-
SelSim: A program to simulate population genetic data with natural selection and recombination
-
SPENCER, C. C., and G. COOP, 2004 SelSim: a program to simulate population genetic data with natural selection and recombination. Bioinformatics 20: 3673-3675.
-
(2004)
Bioinformatics
, vol.20
, pp. 3673-3675
-
-
Spencer, C.C.1
Coop, G.2
-
63
-
-
10344221021
-
Disentangling the effects of demography and selection in human history
-
STAJICH, J. E., and M. W. HAHN, 2005 Disentangling the effects of demography and selection in human history. Mol. Biol. Evol. 22: 63-73.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 63-73
-
-
Stajich, J.E.1
Hahn, M.W.2
-
64
-
-
33846589670
-
The recent demographic and adaptive history of Drosophila melanogaster
-
STEPHAN, W., and H. LI, 2007 The recent demographic and adaptive history of Drosophila melanogaster. Heredity 98: 65-68.
-
(2007)
Heredity
, vol.98
, pp. 65-68
-
-
Stephan, W.1
Li, H.2
-
65
-
-
0036020892
-
A direct approach to false discovery rates
-
STOREY, J. D., 2002 A direct approach to false discovery rates. J. R. Stat. Soc. Ser. B 64: 479-498.
-
(2002)
J. R. Stat. Soc. Ser. B
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
66
-
-
0021066244
-
Evolutionary relationship of DNA sequences in finite populations
-
TAJIMA, F., 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
-
(1983)
Genetics
, vol.105
, pp. 437-460
-
-
Tajima, F.1
-
67
-
-
0024762773
-
The effect of change in population size on DNA polymorphism
-
TAJIMA, F., 1989a The effect of change in population size on DNA polymorphism. Genetics 123: 597-601.
-
(1989)
Genetics
, vol.123
, pp. 597-601
-
-
Tajima, F.1
-
68
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
TAJIMA, F., 1989b Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
69
-
-
33745228973
-
Reconstructing genetic ancestry blocks in admixed individuals
-
TANG, H., M. CORAM, P. WANG, X. ZHU and N. RISCH, 2006 Reconstructing genetic ancestry blocks in admixed individuals. Am. J. Hum. Genet. 79: 1-12.
-
(2006)
Am. J. Hum. Genet.
, vol.79
, pp. 1-12
-
-
Tang, H.1
Coram, M.2
Wang, P.3
Zhu, X.4
Risch, N.5
-
70
-
-
34547110828
-
A new approach for using genome scans to detect recent positive selection in the human genome
-
TANG, K., K. R. THORNTON and M. STONEKING, 2007 A new approach for using genome scans to detect recent positive selection in the human genome. PLoS Biol. 5: e171.
-
(2007)
PLoS Biol.
, vol.5
-
-
Tang, K.1
Thornton, K.R.2
Stoneking, M.3
-
71
-
-
33644778674
-
Directional positive selection on an allele of arbitrary dominance
-
TESHIMA, K. M., and M. PRZEWORSKI, 2006 Directional positive selection on an allele of arbitrary dominance. Genetics 172: 713-718.
-
(2006)
Genetics
, vol.172
, pp. 713-718
-
-
Teshima, K.M.1
Przeworski, M.2
-
72
-
-
33644763127
-
Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
-
THORNTON, K., and P. ANDOLFATTO, 2006 Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 172: 1607-1619.
-
(2006)
Genetics
, vol.172
, pp. 1607-1619
-
-
Thornton, K.1
Andolfatto, P.2
-
73
-
-
34247891656
-
Controlling the false-positive rate in multilocus genome scans for selection
-
THORNTON, K. R., and J. D. JENSEN, 2007 Controlling the false-positive rate in multilocus genome scans for selection. Genetics 175: 737-750.
-
(2007)
Genetics
, vol.175
, pp. 737-750
-
-
Thornton, K.R.1
Jensen, J.D.2
-
74
-
-
34249074492
-
Progress and prospects in mapping recent selection in the genome
-
THORNTON, K. R., J. D. JENSEN, C. BECQUET and P. ANDOLFATTO, 2007 Progress and prospects in mapping recent selection in the genome. Heredity 98: 340-348.
-
(2007)
Heredity
, vol.98
, pp. 340-348
-
-
Thornton, K.R.1
Jensen, J.D.2
Becquet, C.3
Andolfatto, P.4
-
75
-
-
33749034726
-
A genomewide single-nucleotide-polymorphism panel with high ancestry information for African American admixture mapping
-
TIAN, C., D. A. HINDS, R. SHIGETA, R. KITTLES, D. G. BALLINGER et al., 2006 A genomewide single-nucleotide-polymorphism panel with high ancestry information for African American admixture mapping. Am. J. Hum. Genet. 79: 640-649.
-
(2006)
Am. J. Hum. Genet.
, vol.79
, pp. 640-649
-
-
Tian, C.1
Hinds, D.A.2
Shigeta, R.3
Kittles, R.4
Ballinger, D.G.5
-
77
-
-
77950856354
-
Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication
-
VONHOLDT, B. M., J. P. POLLINGER, K. E. LOHMUELLER, E.HAN, H. G. PARKER et al., 2010 Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication. Nature 464: 898-902.
-
(2010)
Nature
, vol.464
, pp. 898-902
-
-
Vonholdt, B.M.1
Pollinger, J.P.2
Lohmueller, K.E.3
Han, E.4
Parker, H.G.5
-
78
-
-
0032884643
-
Recombination and the power of statistical tests of neutrality
-
WALL, J. D., 1999 Recombination and the power of statistical tests of neutrality. Genet. Res. 74: 65-79.
-
(1999)
Genet. Res.
, vol.74
, pp. 65-79
-
-
Wall, J.D.1
-
79
-
-
67749111629
-
Detecting ancient admixture and estimating demographic parameters in multiple human populations
-
WALL, J. D., K. E. LOHMUELLER and V. PLAGNOL, 2009 Detecting ancient admixture and estimating demographic parameters in multiple human populations. Mol. Biol. Evol. 26: 1823-1827.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1823-1827
-
-
Wall, J.D.1
Lohmueller, K.E.2
Plagnol, V.3
-
80
-
-
30444460720
-
Global landscape of recent inferred Darwinian selection for Homo sapiens
-
WANG, E. T., G. KODAMA, P. BALDI and R. K. MOYZIS, 2006 Global landscape of recent inferred Darwinian selection for Homo sapiens. Proc. Natl. Acad. Sci. USA 103: 135-140.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 135-140
-
-
Wang, E.T.1
Kodama, G.2
Baldi, P.3
Moyzis, R.K.4
-
81
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
WATTERSON, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276.
-
(1975)
Theor. Popul. Biol.
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
82
-
-
0017886236
-
The homozygosity test of neutrality
-
WATTERSON, G. A., 1978a The homozygosity test of neutrality. Genetics 88: 405-417.
-
(1978)
Genetics
, vol.88
, pp. 405-417
-
-
Watterson, G.A.1
-
83
-
-
0017801661
-
An analysis of multi-allelic data
-
WATTERSON, G. A., 1978b An analysis of multi-allelic data. Genetics 88: 171-179.
-
(1978)
Genetics
, vol.88
, pp. 171-179
-
-
Watterson, G.A.1
-
84
-
-
34347336584
-
Localizing recent adaptive evolution in the human genome
-
WILLIAMSON, S. H., M. J. HUBISZ, A. G. CLARK, B. A. PAYSEUR, C. D. BUSTAMANTE et al., 2007 Localizing recent adaptive evolution in the human genome. PLoS Genet. 3: e90.
-
(2007)
PLoS Genet.
, vol.3
-
-
Williamson, S.H.1
Hubisz, M.J.2
Clark, A.G.3
Payseur, B.A.4
Bustamante, C.D.5
-
85
-
-
19744371138
-
The effects of artificial selection on the maize genome
-
WRIGHT, S. I., I. V. BI, S. G. SCHROEDER, M. YAMASAKI, J. F. DOEBLEY et al., 2005 The effects of artificial selection on the maize genome. Science 308: 1310-1314.
-
(2005)
Science
, vol.308
, pp. 1310-1314
-
-
Wright, S.I.1
Bi, I.V.2
Schroeder, S.G.3
Yamasaki, M.4
Doebley, J.F.5
|