Rotational position of a 5-methylcytosine-containing cyclobutane pyrimidine dimer in a nucleosome greatly affects its deamination rate

Journal of Biological Chemistry

Volumn 286, Issue 8, 2011, Pages 6329-6335

  Song, Qian ^a   Cannistraro, Vincent J ^a   Taylor, John Stephen ^a  

^a WASHINGTON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOBUTANE PYRIMIDINE DIMERS; DNA BENDING; DNA LESIONS; DNA POLYMERASE; HOTSPOTS; METHYLCYTOSINE; NUCLEOSOMES; SKIN CANCERS; SUGAR PHOSPHATE;

AROMATIC COMPOUNDS; BUTANE; CESIUM; DNA; NUCLEIC ACIDS; SUGARS;

AMINES;

5 METHYLCYTOSINE; HISTONE; PYRIMIDINE DIMER;

ARTICLE; CELLULAR DISTRIBUTION; CONTROLLED STUDY; CPG ISLAND; DEAMINATION; GENE INSERTION; GENE MUTATION; NUCLEOSOME; PRIORITY JOURNAL; ROTATIONAL POSITION; ULTRAVIOLET RADIATION;

5-METHYLCYTOSINE; ANIMALS; DEAMINATION; DNA; MODELS, MOLECULAR; MUTAGENESIS; NUCLEOSOMES; PYRIMIDINE DIMERS; ULTRAVIOLET RAYS; XENOPUS LAEVIS;

EID: 79953166799     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.183178     Document Type: Article

References (57)

1. Brash, D. E., Rudolph, J. A., Simon, J. A., Lin, A., McKenna, G. J., Baden, H. P., Halperin, A. J., and Pontén, J. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 10124-10128
2. Ziegler, A., Leffell, D. J., Kunala, S., Sharma, H. W., Gailani, M., Simon, J. A., Halperin, A. J., Baden, H. P., Shapiro, P. E., Bale, A. E., and Brash, D. E. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 4216-4220
3. Giglia-Mari, G., and Sarasin, A. (2003) Hum. Mutat. 21, 217-228
4. Pfeifer, G. P., You, Y. H., and Besaratinia, A. (2005) Mutat. Res. 571, 19-31
5. Yoon, J. H., Lee, C. S., O'Connor, T. R., Yasui, A., and Pfeifer, G. P. (2000) J. Mol. Biol. 299, 681-693
6. You, Y. H., and Pfeifer, G. P. (2001) J. Mol. Biol. 305, 389-399
7. Cadet, J., Sage, E., and Douki, T. (2005) Mutat. Res. 571, 3-17
8. Douki, T., and Cadet, J. (2001) Biochemistry 40, 2495-2501
9. Tommasi, S., Denissenko, M. F., and Pfeifer, G. P. (1997) Cancer Res. 57, 4727-4730
10. Drouin, R., and Therrien, J. P. (1997) Photochem. Photobiol. 66, 719-726
11. You, Y. H., Li, C., and Pfeifer, G. P. (1999) J. Mol. Biol. 293, 493-503
12. You, Y. H., Szabó, P. E., and Pfeifer, G. P. (2000) Carcinogenesis 21, 2113-2117
13. You, Y. H., Lee, D. H., Yoon, J. H., Nakajima, S., Yasui, A., and Pfeifer, G. P. (2001) J. Biol. Chem. 276, 44688-44694
14. Washington, M. T., Johnson, R. E., Prakash, S., and Prakash, L. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 3094-3099
15. Yu, S. L., Johnson, R. E., Prakash, S., and Prakash, L. (2001) Mol. Cell. Biol. 21, 185-188
16. McCulloch, S. D., Kokoska, R. J., Masutani, C., Iwai, S., Hanaoka, F., and Kunkel, T. A. (2004) Nature 428, 97-100
17. Vu, B., Cannistraro, V. J., Sun, L., and Taylor, J. S. (2006) Biochemistry 45, 9327-9335
18. Setlow, R. B. (1966) Science 153, 379-386
19. Fix, D., and Bockrath, R. (1981) Mol. Gen. Genet. 182, 7-11
20. Lemaire, D. G., and Ruzsicska, B. P. (1993) Biochemistry 32, 2525-2533
21. Tu, Y., Dammann, R., and Pfeifer, G. P. (1998) J. Mol. Biol. 284, 297-311
22. Douki, T., and Cadet, J. (1994) Biochemistry 33, 11942-11950
23. Celewicz, L., Mayer, M., and Shetlar, M. D. (2005) Photochem. Photobiol. 81, 404-418
24. Cannistraro, V. J., and Taylor, J. S. (2009) J. Mol. Biol. 392, 1145-1157
25. Frederico, L. A., Kunkel, T. A., and Shaw, B. R. (1990) Biochemistry 29, 2532-2537
26. Shen, J. C., Rideout, W. M., 3rd, and Jones, P. A. (1994) Nucleic. Acids. Res. 22, 972-976
27. Taylor, J. S., and O'Day, C. L. (1990) Biochemistry 29, 1624-1632
28. Jiang, N., and Taylor, J. S. (1993) Biochemistry 32, 472-481
29. Lee, D. H., and Pfeifer, G. P. (2003) J. Biol. Chem. 278, 10314-10321
30. Luger, K. (2006) Chromosome Res. 14, 5-16
31. Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Nature 389, 251-260
32. Gale, J. M., Nissen, K. A., and Smerdon, M. J. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 6644-6648
33. Pehrson, J. R. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 9149-9153
34. Pehrson, J. R., and Cohen, L. H. (1992) Nucleic. Acids Res. 20, 1321-1324
35. Becker, M. M., and Wang, Z. (1989) J. Mol. Biol. 210, 429-438
36. Pfeifer, G. P. (1997) Photochem. Photobiol. 65, 270-283
37. Suquet, C., and Smerdon, M. J. (1993) J. Biol. Chem. 268, 23755-23757
38. Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J. S., and Kang, C. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 15965-15970
39. Kosmoski, J. V., and Smerdon, M. J. (1999) Biochemistry 38, 9485-9494
40. Kosmoski, J. V., Ackerman, E. J., and Smerdon, M. J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 10113-10118
41. Svedruzić, Z. M., Wang, C., Kosmoski, J. V., and Smerdon, M. J. (2005) J. Biol. Chem. 280, 40051-40057; Correction (2010) J. Biol. Chem. 285, 39574
42. Thoma, F. (2005) DNA Repair 4, 855-869
43. Wang, Z. G., Wu, X. H., and Friedberg, E. C. (1991) J. Biol. Chem. 266, 22472-22478
44. Hara, R., and Sancar, A. (2003) Mol. Cell. Biol. 23, 4121-4125
45. Liu, X., and Smerdon, M. J. (2000) J. Biol. Chem. 275, 23729-23735
46. Ober, M., and Lippard, S. J. (2007) J. Am. Chem. Soc. 129, 6278-6286
47. Li, Q., and Wrange, O. (1993) Genes Dev. 7, 2471-2482
48. Li, Q., and Wrange, O. (1995) Mol. Cell. Biol. 15, 4375-4384
49. Balasubramanian, B., Pogozelski, W. K., and Tullius, T. D. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 9738-9743
50. Davey, C. A., Sargent, D. F., Luger, K., Maeder, A. W., and Richmond, T. J. (2002) J. Mol. Biol. 319, 1097-1113
51. Sohail, A., Hayes, C. S., Divvela, P., Setlow, P., and Bhagwat, A. S. (2002) Biochemistry 41, 11325-11330
52. Carpenter, M., Divvela, P., Pingoud, V., Bujnicki, J., and Bhagwat, A. S. (2006) Nucleic Acids Res. 34, 3762-3770
53. Cannistraro, V. J., and Taylor, J. S. (2010) Nucleic. Acids. Res. 38, 6943-6955
54. Jing, Y., Kao, J. F., and Taylor, J. S. (1998) Nucleic. Acids. Res. 26, 3845-3853
55. Mu, D., Tursun, M., Duckett, D. R., Drummond, J. T., Modrich, P., and Sancar, A. (1997) Mol. Cell. Biol. 17, 760-769
56. Sugasawa, K., Okamoto, T., Shimizu, Y., Masutani, C., Iwai, S., and Hanaoka, F. (2001) Genes Dev. 15, 507-521
57. Kreutzer, D. A., and Essigmann, J. M. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 3578-3582