메뉴 건너뛰기




Volumn 36, Issue 3, 2011, Pages 127-132

Functional specialization of ribosomes?

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RECEPTOR FOR ACTIVATED C KINASE 1; RIBOSOME PROTEIN; RIBOSOME RNA; SMALL NUCLEOLAR RNA;

EID: 79952453456     PISSN: 09680004     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tibs.2010.12.002     Document Type: Review
Times cited : (90)

References (53)
  • 1
    • 34548395468 scopus 로고    scopus 로고
    • The ribosome in focus: new structures bring new insights
    • Korostelev A., Noller H.F. The ribosome in focus: new structures bring new insights. Trends Biochem. Sci. 2007, 32:434-441.
    • (2007) Trends Biochem. Sci. , vol.32 , pp. 434-441
    • Korostelev, A.1    Noller, H.F.2
  • 2
    • 0043268903 scopus 로고    scopus 로고
    • The structural basis of large ribosomal subunit function
    • Moore P.B., Steitz T.A. The structural basis of large ribosomal subunit function. Annu. Rev. Biochem. 2003, 72:813-850.
    • (2003) Annu. Rev. Biochem. , vol.72 , pp. 813-850
    • Moore, P.B.1    Steitz, T.A.2
  • 3
    • 0037154986 scopus 로고    scopus 로고
    • Ribosome structure and the mechanism of translation
    • Ramakrishnan V. Ribosome structure and the mechanism of translation. Cell 2002, 108:557-572.
    • (2002) Cell , vol.108 , pp. 557-572
    • Ramakrishnan, V.1
  • 4
    • 39749138785 scopus 로고    scopus 로고
    • A structural understanding of the dynamic ribosome machine
    • Steitz T.A. A structural understanding of the dynamic ribosome machine. Nat. Rev. Mol. Cell Biol. 2008, 9:242-253.
    • (2008) Nat. Rev. Mol. Cell Biol. , vol.9 , pp. 242-253
    • Steitz, T.A.1
  • 5
    • 0033367325 scopus 로고    scopus 로고
    • Ribosome synthesis in Saccharomyces cerevisiae
    • Venema J., Tollervey D. Ribosome synthesis in Saccharomyces cerevisiae. Annu. Rev. Genet. 1999, 33:261-311.
    • (1999) Annu. Rev. Genet. , vol.33 , pp. 261-311
    • Venema, J.1    Tollervey, D.2
  • 6
    • 33646537802 scopus 로고    scopus 로고
    • Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes
    • Fleischer T.C., et al. Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes. Genes Dev. 2006, 20:1294-1307.
    • (2006) Genes Dev. , vol.20 , pp. 1294-1307
    • Fleischer, T.C.1
  • 7
    • 0018075073 scopus 로고
    • Modification of yeast ribosomal proteins
    • Kruiswijk T., et al. Modification of yeast ribosomal proteins. Phosphorylation. Biochem. J. 1978, 175:213-219.
    • (1978) Phosphorylation. Biochem. J. , vol.175 , pp. 213-219
    • Kruiswijk, T.1
  • 8
    • 0037197887 scopus 로고    scopus 로고
    • Direct mass spectrometric analysis of intact proteins of the yeast large ribosomal subunit using capillary LC/FTICR
    • Lee S.W., et al. Direct mass spectrometric analysis of intact proteins of the yeast large ribosomal subunit using capillary LC/FTICR. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:5942-5947.
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 5942-5947
    • Lee, S.W.1
  • 9
    • 0029952108 scopus 로고    scopus 로고
    • Mass spectrometric analysis of 40 S ribosomal proteins from Rat-1 fibroblasts
    • Louie D.F., et al. Mass spectrometric analysis of 40 S ribosomal proteins from Rat-1 fibroblasts. J. Biol. Chem. 1996, 271:28189-28198.
    • (1996) J. Biol. Chem. , vol.271 , pp. 28189-28198
    • Louie, D.F.1
  • 10
    • 0034616943 scopus 로고    scopus 로고
    • Cell cycle-regulated modification of the ribosome by a variant multiubiquitin chain
    • Spence J., et al. Cell cycle-regulated modification of the ribosome by a variant multiubiquitin chain. Cell 2000, 102:67-76.
    • (2000) Cell , vol.102 , pp. 67-76
    • Spence, J.1
  • 11
    • 0035815668 scopus 로고    scopus 로고
    • Regulated heterogeneity in 12-kDa P-protein phosphorylation and composition of ribosomes in maize (Zea mays L.)
    • Szick-Miranda K., Bailey-Serres J. Regulated heterogeneity in 12-kDa P-protein phosphorylation and composition of ribosomes in maize (Zea mays L.). J. Biol. Chem. 2001, 276:10921-10928.
    • (2001) J. Biol. Chem. , vol.276 , pp. 10921-10928
    • Szick-Miranda, K.1    Bailey-Serres, J.2
  • 12
    • 0032894591 scopus 로고    scopus 로고
    • A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae
    • Samarsky D.A., Fournier M.J. A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Nucleic Acids Res. 1999, 27:161-164.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 161-164
    • Samarsky, D.A.1    Fournier, M.J.2
  • 13
    • 37549063435 scopus 로고    scopus 로고
    • Intragenomic 16S rDNA divergence in Haloarcula marismortui is an adaptation to different temperatures
    • López-López A., et al. Intragenomic 16S rDNA divergence in Haloarcula marismortui is an adaptation to different temperatures. J. Mol. Evol. 2007, 65:687-696.
    • (2007) J. Mol. Evol. , vol.65 , pp. 687-696
    • López-López, A.1
  • 14
    • 33749531968 scopus 로고    scopus 로고
    • The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation
    • Schluenzen F., et al. The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation. Nat. Struct. Mol. Biol. 2006, 13:871-878.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 871-878
    • Schluenzen, F.1
  • 15
    • 33749527393 scopus 로고    scopus 로고
    • Structural analysis of kasugamycin inhibition of translation
    • Schuwirth B.S., et al. Structural analysis of kasugamycin inhibition of translation. Nat. Struct. Mol. Biol. 2006, 13:879-886.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 879-886
    • Schuwirth, B.S.1
  • 16
    • 0027442084 scopus 로고
    • Resistance of lambda cI translation to antibiotics that inhibit translation initiation
    • Chin K., et al. Resistance of lambda cI translation to antibiotics that inhibit translation initiation. J. Bacteriol. 1993, 175:7471-7473.
    • (1993) J. Bacteriol. , vol.175 , pp. 7471-7473
    • Chin, K.1
  • 17
    • 0036035334 scopus 로고    scopus 로고
    • Differential inhibition of 30S and 70S translation initiation complexes on leaderless mRNA by kasugamycin
    • Moll I., Bläsi U. Differential inhibition of 30S and 70S translation initiation complexes on leaderless mRNA by kasugamycin. Biochem. Biophys. Res. Commun. 2002, 297:1021-1026.
    • (2002) Biochem. Biophys. Res. Commun. , vol.297 , pp. 1021-1026
    • Moll, I.1    Bläsi, U.2
  • 18
    • 58649086299 scopus 로고    scopus 로고
    • An unexpected type of ribosomes induced by kasugamycin: a look into ancestral times of protein synthesis?
    • Kaberdina A.C., et al. An unexpected type of ribosomes induced by kasugamycin: a look into ancestral times of protein synthesis?. Mol. Cell 2009, 33:227-236.
    • (2009) Mol. Cell , vol.33 , pp. 227-236
    • Kaberdina, A.C.1
  • 19
    • 0019795908 scopus 로고
    • Regulation of synthesis of cell-specific ribosomal proteins during differentiation of Dictyostelium discoideum
    • Ramagopal S., Ennis H.L. Regulation of synthesis of cell-specific ribosomal proteins during differentiation of Dictyostelium discoideum. Proc. Natl. Acad. Sci. U.S.A. 1981, 78:3083-3087.
    • (1981) Proc. Natl. Acad. Sci. U.S.A. , vol.78 , pp. 3083-3087
    • Ramagopal, S.1    Ennis, H.L.2
  • 20
    • 20444466570 scopus 로고    scopus 로고
    • Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes
    • Chang I.F., et al. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Plant Physiol. 2005, 137:848-862.
    • (2005) Plant Physiol. , vol.137 , pp. 848-862
    • Chang, I.F.1
  • 21
    • 17844367135 scopus 로고    scopus 로고
    • High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome
    • Giavalisco P., et al. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Plant Mol. Biol. 2005, 57:577-591.
    • (2005) Plant Mol. Biol. , vol.57 , pp. 577-591
    • Giavalisco, P.1
  • 22
    • 0033744286 scopus 로고    scopus 로고
    • Down regulation of ribosomal protein mRNAs during neuronal differentiation of human NTERA2 cells
    • Bévort M., Leffers H. Down regulation of ribosomal protein mRNAs during neuronal differentiation of human NTERA2 cells. Differentiation 2000, 66:81-92.
    • (2000) Differentiation , vol.66 , pp. 81-92
    • Bévort, M.1    Leffers, H.2
  • 23
    • 0033637153 scopus 로고    scopus 로고
    • Genomic expression programs in the response of yeast cells to environmental changes
    • Gasch A.P., et al. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell 2000, 11:4241-4257.
    • (2000) Mol. Biol. Cell , vol.11 , pp. 4241-4257
    • Gasch, A.P.1
  • 24
    • 65249176527 scopus 로고    scopus 로고
    • Stress-dependent coordination of transcriptome and translatome in yeast
    • Halbeisen R.E., Gerber A.P. Stress-dependent coordination of transcriptome and translatome in yeast. PLoS Biol. 2009, 7:e105.
    • (2009) PLoS Biol. , vol.7
    • Halbeisen, R.E.1    Gerber, A.P.2
  • 25
    • 33845314002 scopus 로고    scopus 로고
    • Sexually dimorphic expression of the genes encoding ribosomal proteins L17 and L37 in the song control nuclei of juvenile zebra finches
    • Tang Y.P., Wade J. Sexually dimorphic expression of the genes encoding ribosomal proteins L17 and L37 in the song control nuclei of juvenile zebra finches. Brain Res. 2006, 1126:102-108.
    • (2006) Brain Res. , vol.1126 , pp. 102-108
    • Tang, Y.P.1    Wade, J.2
  • 26
    • 70349669222 scopus 로고    scopus 로고
    • Transcript profiling provides evidence of functional divergence and expression networks among ribosomal protein gene paralogs in Brassica napus
    • Whittle C.A., Krochko J.E. Transcript profiling provides evidence of functional divergence and expression networks among ribosomal protein gene paralogs in Brassica napus. Plant Cell 2009, 21:2003-2219.
    • (2009) Plant Cell , vol.21 , pp. 2003-2219
    • Whittle, C.A.1    Krochko, J.E.2
  • 27
    • 57149143976 scopus 로고    scopus 로고
    • A quantitative estimation of the global translational activity in logarithmically growing yeast cells
    • von der Haar T. A quantitative estimation of the global translational activity in logarithmically growing yeast cells. BMC Syst. Biol. 2008, 2:87.
    • (2008) BMC Syst. Biol. , vol.2 , pp. 87
    • von der Haar, T.1
  • 28
    • 0033229970 scopus 로고    scopus 로고
    • The economics of ribosome biosynthesis in yeast
    • Warner J.R. The economics of ribosome biosynthesis in yeast. Trends Biochem. Sci. 1999, 24:437-440.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 437-440
    • Warner, J.R.1
  • 29
    • 0142215475 scopus 로고    scopus 로고
    • Global analysis of protein expression in yeast
    • Ghaemmaghami S., et al. Global analysis of protein expression in yeast. Nature 2003, 425:737-741.
    • (2003) Nature , vol.425 , pp. 737-741
    • Ghaemmaghami, S.1
  • 30
    • 42349100173 scopus 로고    scopus 로고
    • The chemical genomic portrait of yeast: uncovering a phenotype for all genes
    • Hillenmeyer M.E., et al. The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science 2008, 320:362-365.
    • (2008) Science , vol.320 , pp. 362-365
    • Hillenmeyer, M.E.1
  • 31
    • 33645467060 scopus 로고    scopus 로고
    • Eukaryotic ribosomal proteins lacking a eubacterial counterpart: important players in ribosomal function
    • Dresios J., et al. Eukaryotic ribosomal proteins lacking a eubacterial counterpart: important players in ribosomal function. Mol. Microbiol. 2006, 59:1651-1663.
    • (2006) Mol. Microbiol. , vol.59 , pp. 1651-1663
    • Dresios, J.1
  • 32
    • 72549101167 scopus 로고    scopus 로고
    • RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs
    • Landry D.M., et al. RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs. Genes Dev. 2009, 23:2753-2764.
    • (2009) Genes Dev. , vol.23 , pp. 2753-2764
    • Landry, D.M.1
  • 33
    • 76649129549 scopus 로고    scopus 로고
    • Proteomics analysis of the nucleolus in adenovirus-infected cells
    • Lam Y.W., et al. Proteomics analysis of the nucleolus in adenovirus-infected cells. Mol. Cell Proteomics 2010, 9:117-130.
    • (2010) Mol. Cell Proteomics , vol.9 , pp. 117-130
    • Lam, Y.W.1
  • 34
    • 2342575611 scopus 로고    scopus 로고
    • Human S15a expression is upregulated by hepatitis B virus X protein
    • Lian Z., et al. Human S15a expression is upregulated by hepatitis B virus X protein. Mol. Carcinog. 2004, 40:34-46.
    • (2004) Mol. Carcinog. , vol.40 , pp. 34-46
    • Lian, Z.1
  • 35
    • 41649115487 scopus 로고    scopus 로고
    • Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping
    • Esguerra J., et al. Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping. RNA 2008, 14:649-656.
    • (2008) RNA , vol.14 , pp. 649-656
    • Esguerra, J.1
  • 36
    • 33646543044 scopus 로고    scopus 로고
    • Impaired control of IRES-mediated translation in X-linked dyskeratosis congenita
    • Yoon A., et al. Impaired control of IRES-mediated translation in X-linked dyskeratosis congenita. Science 2006, 312:902-906.
    • (2006) Science , vol.312 , pp. 902-906
    • Yoon, A.1
  • 37
    • 72949115517 scopus 로고    scopus 로고
    • Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA
    • Hendrickson D.G., et al. Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA. PLoS Biol. 2009, 7:e1000238.
    • (2009) PLoS Biol. , vol.7
    • Hendrickson, D.G.1
  • 38
    • 62549134121 scopus 로고    scopus 로고
    • Ghaemmaghami, S., Newman, J. R. & Weissman, J. S. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia N.T., et al. Ghaemmaghami, S., Newman, J. R. & Weissman, J. S. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 2009, 324:218-223.
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1
  • 39
    • 0037277456 scopus 로고    scopus 로고
    • Large-scale functional genomic analysis of sporulation and meiosis in Saccharomyces cerevisiae
    • Enyenihi A.H., Saunders W.S. Large-scale functional genomic analysis of sporulation and meiosis in Saccharomyces cerevisiae. Genetics 2003, 163:47-54.
    • (2003) Genetics , vol.163 , pp. 47-54
    • Enyenihi, A.H.1    Saunders, W.S.2
  • 40
    • 33846528944 scopus 로고    scopus 로고
    • Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies
    • Haarer B., et al. Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies. Genes Dev. 2007, 21:148-159.
    • (2007) Genes Dev. , vol.21 , pp. 148-159
    • Haarer, B.1
  • 41
    • 35548973466 scopus 로고    scopus 로고
    • Functional specificity among ribosomal proteins regulates gene expression
    • Komili S., et al. Functional specificity among ribosomal proteins regulates gene expression. Cell 2007, 131:557-571.
    • (2007) Cell , vol.131 , pp. 557-571
    • Komili, S.1
  • 42
    • 0035162931 scopus 로고    scopus 로고
    • A genomic study of the bipolar bud site selection pattern in Saccharomyces cerevisiae
    • Ni L., Snyder M. A genomic study of the bipolar bud site selection pattern in Saccharomyces cerevisiae. Mol. Biol. Cell 2001, 12:2147-2170.
    • (2001) Mol. Biol. Cell , vol.12 , pp. 2147-2170
    • Ni, L.1    Snyder, M.2
  • 43
    • 33746753342 scopus 로고    scopus 로고
    • Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast
    • Parsons A.B., et al. Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast. Cell 2006, 126:611-625.
    • (2006) Cell , vol.126 , pp. 611-625
    • Parsons, A.B.1
  • 44
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T., Allis C.D. Translating the histone code. Science 2001, 293:1074-1080.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 45
    • 3042779648 scopus 로고    scopus 로고
    • Asc1p, a WD40-domain containing adaptor protein, is required for the interaction of the RNA-binding protein Scp160p with polysomes
    • Baum S., et al. Asc1p, a WD40-domain containing adaptor protein, is required for the interaction of the RNA-binding protein Scp160p with polysomes. Biochem. J. 2004, 380:823-830.
    • (2004) Biochem. J. , vol.380 , pp. 823-830
    • Baum, S.1
  • 46
    • 54949148332 scopus 로고    scopus 로고
    • Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
    • Hogan D.J., et al. Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol. 2008, 6:e255.
    • (2008) PLoS Biol. , vol.6
    • Hogan, D.J.1
  • 47
    • 0027959270 scopus 로고
    • Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae
    • Fuge E.K., et al. Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae. J. Bacteriol. 1994, 176:5802-5813.
    • (1994) J. Bacteriol. , vol.176 , pp. 5802-5813
    • Fuge, E.K.1
  • 48
    • 63649157049 scopus 로고    scopus 로고
    • How common are extraribosomal functions of ribosomal proteins?
    • Warner J.R., McIntosh K.B. How common are extraribosomal functions of ribosomal proteins?. Mol. Cell 2009, 34:3-11.
    • (2009) Mol. Cell , vol.34 , pp. 3-11
    • Warner, J.R.1    McIntosh, K.B.2
  • 50
    • 35148812923 scopus 로고    scopus 로고
    • The ribosome filter redux
    • Mauro V.P., Edelman G.M. The ribosome filter redux. Cell Cycle 2007, 6:2246-2251.
    • (2007) Cell Cycle , vol.6 , pp. 2246-2251
    • Mauro, V.P.1    Edelman, G.M.2
  • 51
    • 77951431225 scopus 로고    scopus 로고
    • Ribosomopathies: human disorders of ribosome dysfunction
    • Narla A., Ebert B.L. Ribosomopathies: human disorders of ribosome dysfunction. Blood 2010, 115:3196-3205.
    • (2010) Blood , vol.115 , pp. 3196-3205
    • Narla, A.1    Ebert, B.L.2
  • 52
    • 58149250110 scopus 로고    scopus 로고
    • Many ribosomal protein mutations are associated with growth impairment and tumor predisposition in zebrafish
    • Lai K., et al. Many ribosomal protein mutations are associated with growth impairment and tumor predisposition in zebrafish. Dev. Dyn. 2009, 238:76-85.
    • (2009) Dev. Dyn. , vol.238 , pp. 76-85
    • Lai, K.1
  • 53
    • 66849089596 scopus 로고    scopus 로고
    • Toward a structural understanding of IRES RNA function
    • Filbin M.E., Kieft J.S. Toward a structural understanding of IRES RNA function. Curr. Opin. Struct. Biol. 2009, 19:267-276.
    • (2009) Curr. Opin. Struct. Biol. , vol.19 , pp. 267-276
    • Filbin, M.E.1    Kieft, J.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.