메뉴 건너뛰기




Volumn 21, Issue 8, 2009, Pages 2203-2219

Transcript profiling provides evidence of functional divergence and expression networks among ribosomal protein gene paralogs in brassica napus

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; BRASSICA NAPUS;

EID: 70349669222     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.109.068411     Document Type: Article
Times cited : (75)

References (94)
  • 1
    • 0345071423 scopus 로고    scopus 로고
    • Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
    • Adams, K.L., Cronn, R., Percifield, R., and Wendel, J.F. (2003). Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc. Natl. Acad. Sci. USA 100: 4649-4654.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 4649-4654
    • Adams, K.L.1    Cronn, R.2    Percifield, R.3    Wendel, J.F.4
  • 2
    • 0035546157 scopus 로고    scopus 로고
    • Gene expression and molecular evolution
    • Akashi, H. (2001). Gene expression and molecular evolution. Curr. Opin. Genet. Dev. 11: 660-666.
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 660-666
    • Akashi, H.1
  • 3
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 4
    • 33750858684 scopus 로고    scopus 로고
    • Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
    • Aury, J.M., et al. (2006). Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 444: 171-178.
    • (2006) Nature , vol.444 , pp. 171-178
    • Aury, J.M.1
  • 5
    • 33644538902 scopus 로고    scopus 로고
    • Autoregulation of ribosome biosynthesis by a translational response in fission yeast
    • Bachand, F., Lackner, D.H., Bähler, J., and Silver, P.A. (2006). Autoregulation of ribosome biosynthesis by a translational response in fission yeast. Mol. Cell. Biol. 6: 1731-1742.
    • (2006) Mol. Cell. Biol. , vol.6 , pp. 1731-1742
    • Bachand, F.1    Lackner, D.H.2    Bähler, J.3    Silver, P.A.4
  • 8
    • 34748884954 scopus 로고    scopus 로고
    • Molecular evolutionary analyses of the Arabidopsis L7 ribosomal protein gene family
    • Barakat, A., Müller, K.F., and Sáenz-de-Miera, L.E. (2007). Molecular evolutionary analyses of the Arabidopsis L7 ribosomal protein gene family. Gene 403: 143-150.
    • (2007) Gene , vol.403 , pp. 143-150
    • Barakat, A.1    Müller, K.F.2    Sáenz-De-Miera, L.E.3
  • 10
    • 0141533218 scopus 로고    scopus 로고
    • Apical meristems: The plant's fountain of youth
    • DOI 10.1002/bies.10341
    • Bäurle, I., and Laux, T. (2003). Apical meristems: The plant's fountain of youth. Bioessays 25: 961-970. (Pubitemid 37221520)
    • (2003) BioEssays , vol.25 , Issue.10 , pp. 961-970
    • Baurle, I.1    Laux, T.2
  • 12
    • 21644481551 scopus 로고    scopus 로고
    • Nuclear DNA amounts in angiosperms - Progress, problems and prospects
    • Bennett, M.D., and Leitch, I.J. (2005). Nuclear DNA amounts in angiosperms - Progress, problems and prospects. Ann. Bot. (Lond.) 95: 45-90.
    • (2005) Ann. Bot. (Lond.) , vol.95 , pp. 45-90
    • Bennett, M.D.1    Leitch, I.J.2
  • 13
    • 0037381673 scopus 로고    scopus 로고
    • Comparisons with caenorhabditis (-100 Mb) and drosophila (-175 Mb) using flow cytometry show genome size in arabidopsis to be - 157 Mb and thus -25% larger than the arabidopsis genome initiative estimate of -125 MB
    • Bennett, M.D., Leitch, I.J., Price, H.J., and Johnston, J.S. (2003). Comparisons with Caenorhabditis (-100 Mb) and Drosophila (-175 Mb) using flow cytometry show genome size in Arabidopsis to be - 157 Mb and thus -25% larger than the Arabidopsis Genome Initiative estimate of -125 MB. Ann. Bot. (Lond.) 91: 547-557.
    • (2003) Ann. Bot. (Lond.) , vol.91 , pp. 547-557
    • Bennett, M.D.1    Leitch, I.J.2    Price, H.J.3    Johnston, J.S.4
  • 14
    • 0016247234 scopus 로고
    • The ribosomes of drosophila. II. studies on intraspecific variation
    • Berger, E.M., and Weber, L. (1974). The ribosomes of Drosophila. II. Studies on intraspecific variation. Genetics 78: 1173-1183.
    • (1974) Genetics , vol.78 , pp. 1173-1183
    • Berger, E.M.1    Weber, L.2
  • 15
    • 0035875867 scopus 로고    scopus 로고
    • Dosage-dependent gene regulation in multicellular eukaryotes: Implications for dosage compensation, aneuploid syndromes, and quantitative traits
    • Birchler, J.A., Bhadra, U., Bhadra, M.P., and Auger, D.L. (2001). Dosage-dependent gene regulation in multicellular eukaryotes: Implications for dosage compensation, aneuploid syndromes, and quantitative traits. Dev. Biol. 234: 275-288.
    • (2001) Dev. Biol. , vol.234 , pp. 275-288
    • Birchler, J.A.1    Bhadra, U.2    Bhadra, M.P.3    Auger, D.L.4
  • 16
    • 34250632677 scopus 로고    scopus 로고
    • The gene balance hypothesis: From classical genetics to modern genomics
    • Birchler, J.A., and Veitia, R.A. (2007). The gene balance hypothesis: From classical genetics to modern genomics. Plant Cell 19: 395-402.
    • (2007) Plant Cell , vol.19 , pp. 395-402
    • Birchler, J.A.1    Veitia, R.A.2
  • 17
    • 0037313579 scopus 로고    scopus 로고
    • A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
    • Blanc, G., Hokamp, K., and Wolfe, K.H. (2003). A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13: 137-144.
    • (2003) Genome Res. , vol.13 , pp. 137-144
    • Blanc, G.1    Hokamp, K.2    Wolfe, K.H.3
  • 18
    • 3142732892 scopus 로고    scopus 로고
    • Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
    • Blanc, G., and Wolfe, K.H. (2004). Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16: 1679-1691.
    • (2004) Plant Cell , vol.16 , pp. 1679-1691
    • Blanc, G.1    Wolfe, K.H.2
  • 19
    • 33745067419 scopus 로고    scopus 로고
    • The gain and loss of genes during 600 million years of vertebrate evolution
    • DOI 10.1186/gb-2006-7-5-r43
    • Blomme, T., Vandepoele, K., De Bodt, S., Simillion, C., Maere, S., and Van de Peer, Y. (2006). The gain and loss of genes during 600 million years of vertebrate evolution. Genome Biol. 7: R43. (Pubitemid 43885061)
    • (2006) Genome Biology , vol.7 , Issue.5
    • Blomme, T.1    Vandepoele, K.2    De Bodt, S.3    Simillion, C.4    Maere, S.5    Van De Peer, Y.6
  • 20
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • DOI 10.1038/nature01521
    • Bowers, J.E., Chapman, B.A., Rong, J., and Paterson, A.H. (2003). Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422: 433-438. (Pubitemid 36411396)
    • (2003) Nature , vol.422 , Issue.6930 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 21
    • 51849172157 scopus 로고
    • The endosperm in seed development
    • Brink, R.A., and Cooper, D.C. (1947). The endosperm in seed development. Bot. Rev. 13: 479-541.
    • (1947) Bot. Rev. , vol.13 , pp. 479-541
    • Brink, R.A.1    Cooper, D.C.2
  • 22
    • 39749142082 scopus 로고    scopus 로고
    • Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification
    • Carroll, A.J., Heazlewood, J.L., lto, J., and Millar, A.H. (2008). Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Mol. Cell. Proteomics 7: 347-369.
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 347-369
    • Carroll, A.J.1    Heazlewood, J.L.2    Lto, J.3    Millar, A.H.4
  • 23
    • 33646859550 scopus 로고    scopus 로고
    • Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
    • DOI 10.1186/gb-2006-7-2-r13
    • Casneuf, T., De Bodt, S., Raes, J., Maere, S., and Van de Peer, Y. (2006). Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biol. 7: R13. (Pubitemid 43871857)
    • (2006) Genome Biology , vol.7 , Issue.2
    • Casneuf, T.1    De Bodt, S.2    Raes, J.3    Maere, S.4    Van De Peer, Y.5
  • 24
    • 20444466570 scopus 로고    scopus 로고
    • Proteomic characterization of evolutionary conserved and variable proteins of Arabidopsis cytosolic ribosomes
    • Chang, I.F., Szick-Miranda, K., Pan, S., and Bailey-Serres, J. (2005). Proteomic characterization of evolutionary conserved and variable proteins of Arabidopsis cytosolic ribosomes. Plant Physiol. 137: 848-862.
    • (2005) Plant Physiol. , vol.137 , pp. 848-862
    • Chang, I.F.1    Szick-Miranda, K.2    Pan, S.3    Bailey-Serres, J.4
  • 25
    • 32544445408 scopus 로고    scopus 로고
    • Evolution of reproductive proteinsfrom animals and plants
    • Clark, N.L., Aagaard, J.E., and Swanson, W.J. (2006). Evolution of reproductive proteinsfrom animals and plants. Reproduction 131:11-22.
    • (2006) Reproduction , vol.131 , pp. 11-22
    • Clark, N.L.1    Aagaard, J.E.2    Swanson, W.J.3
  • 26
    • 56549119570 scopus 로고    scopus 로고
    • Turning a hobby into a job: How duplicated genes find new functions
    • Conant, G.C, and Wolfe, K.H. (2008). Turning a hobby into a job: How duplicated genes find new functions. Nat. Rev. Genet. 9: 938-950.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 938-950
    • Conant, G.C.1    Wolfe, K.H.2
  • 27
    • 46849099372 scopus 로고    scopus 로고
    • Arabidopsis ribosomal proteins RPL23aA and RPL23aB are differentially targeted to the nucleolus and are disparately required for normal development
    • Degenhardt, R.F., and Bonham-Smith, P.C. (2008). Arabidopsis ribosomal proteins RPL23aA and RPL23aB are differentially targeted to the nucleolus and are disparately required for normal development. Plant Physiol. 147: 128-142.
    • (2008) Plant Physiol. , vol.147 , pp. 128-142
    • Degenhardt, R.F.1    Bonham-Smith, P.C.2
  • 28
    • 2142688344 scopus 로고
    • Germination of lily pollen: Respiration and tube growth
    • Dickinson, D.B. (1965). Germination of lily pollen: Respiration and tube growth. Science 31: 1818-1819.
    • (1965) Science , vol.31 , pp. 1818-1819
    • Dickinson, D.B.1
  • 29
    • 0347275780 scopus 로고    scopus 로고
    • Nuclear DNA content and genome size of trout and human
    • Doležel, J., Bartoš, J., Voglmayr, H., and Greilhuber, J. (2003). Nuclear DNA content and genome size of trout and human. Cytometry 51: 127-128.
    • (2003) Cytometry , vol.51 , pp. 127-128
    • Doležel, J.1    Bartoš, J.2    Voglmayr, H.3    Greilhuber, J.4
  • 30
    • 38049150491 scopus 로고    scopus 로고
    • A portrait of copy-number polymorphism in Drosophila melanogaster
    • Dopman, E.B., and Hartl, D.L. (2007). A portrait of copy-number polymorphism in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 104: 19920-19925.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 19920-19925
    • Dopman, E.B.1    Hartl, D.L.2
  • 31
    • 0033551151 scopus 로고    scopus 로고
    • Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
    • DOI 10.1073/pnas.96.8.4482
    • Duret, L., and Mouchiroud, D. (1999). Expression pattern and, surprisingly, gene length shade codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc. Natl. Acad. Sci. USA 96: 4482-4487. (Pubitemid 29190362)
    • (1999) Proceedings of the National Academy of Sciences of the United States of America , vol.96 , Issue.8 , pp. 4482-4487
    • Duret, L.1    Mouchiroud, D.2
  • 33
    • 0034084035 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags indicates 35,000 human genes
    • Ewing, B., and Green, P. (2000). Analysis of expressed sequence tags indicates 35,000 human genes. Nat. Genet. 25: 232-234.
    • (2000) Nat. Genet. , vol.25 , pp. 232-234
    • Ewing, B.1    Green, P.2
  • 34
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force, A., Lynch, M., Pickett, F.B., Amores, A., Yan, Y.L., and Postlethwait, J. (1999). Preservation of duplicate genes by complementary, degenerate mutations. Genetics 151: 1531-1545. (Pubitemid 29177561)
    • (1999) Genetics , vol.151 , Issue.4 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.-L.5    Postlethwait, J.6
  • 35
    • 57149114784 scopus 로고    scopus 로고
    • The evolutionary position of subfunctionalization, downgraded
    • Freeling, M. (2008). The evolutionary position of subfunctionalization, downgraded. Genome Dyn. 4: 25-40.
    • (2008) Genome Dyn. , vol.4 , pp. 25-40
    • Freeling, M.1
  • 36
    • 33745610025 scopus 로고    scopus 로고
    • Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
    • DOI 10.1101/gr.3681406
    • Freeling, M., and Thomas, B.C. (2006). Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Res. 16: 805-814. (Pubitemid 43992905)
    • (2006) Genome Research , vol.16 , Issue.7 , pp. 805-814
    • Freeling, M.1    Thomas, B.C.2
  • 38
    • 0027399530 scopus 로고
    • Identification of protein coding regions by database similarity search
    • Gish, W., and States, D.J. (1993). Identification of protein coding regions by database similarity search. Nat. Genet. 3: 266-272.
    • (1993) Nat. Genet. , vol.3 , pp. 266-272
    • Gish, W.1    States, D.J.2
  • 39
    • 0027673054 scopus 로고
    • Anther development: Basic principles and practical applications
    • DOI 10.1105/tpc.5.10.1217
    • Goldberg, R.B., Beals, T.P., and Sanders, P.M. (1993). Anther development: Basic principles and practical applications. Plant Cell 5: 1217-1229. (Pubitemid 2001858)
    • (1993) Plant Cell , vol.5 , Issue.10 , pp. 1217-1229
    • Goldberg, R.B.1    Beals, T.P.2    Sanders, S.M.3
  • 40
    • 0038120839 scopus 로고    scopus 로고
    • Comparative analysis of the arabidopsis pollen transcriptome
    • Honys, D., and Twell, D. (2003). Comparative analysis of the Arabidopsis pollen transcriptome. Plant Physiol. 132: 640-652.
    • (2003) Plant Physiol. , vol.132 , pp. 640-652
    • Honys, D.1    Twell, D.2
  • 41
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • DOI 10.1101/gr.9.9.868
    • Huang, X., and Madan, A. (1999). CAP3, A DNA sequence assembly program. Genome Res. 9: 868-877. (Pubitemid 29488446)
    • (1999) Genome Research , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 42
    • 19544388230 scopus 로고    scopus 로고
    • Variation in transcript abundance among four members of the arabidopsis thaliana ribosomal protein s14a gene family
    • HuIm, J.L., Mcintosh, K.B., and Bonham-Smith, P.C. (2005). Variation in transcript abundance among four members of the Arabidopsis thaliana RIBOSOMAL PROTEIN S14a gene family. Plant Sci. 169: 267-278.
    • (2005) Plant Sci. , vol.169 , pp. 267-278
    • Huim, J.L.1    Mcintosh, K.B.2    Bonham-Smith, P.C.3
  • 43
    • 0034076194 scopus 로고    scopus 로고
    • Disruption of an Arabidopsis cytoplasmic ribosomal protein S13-homologous gene by transposon-mediated mutagenesis causes aberrant growth and development
    • Ito, T., Kim, G.T., and Shinozaki, K. (2000). Disruption of an Arabidopsis cytoplasmic ribosomal protein S13-homologous gene by transposon-mediated mutagenesis causes aberrant growth and development. Plant J. 22: 257-264.
    • (2000) Plant J. , vol.22 , pp. 257-264
    • Ito, T.1    Kim, G.T.2    Shinozaki, K.3
  • 44
    • 35548973466 scopus 로고    scopus 로고
    • Functional Specificity among Ribosomal Proteins Regulates Gene Expression
    • DOI 10.1016/j.cell.2007.08.037, PII S0092867407011002
    • Komili, S., Farny, N.G., Roth, F.P., and Silver, P.A. (2007). Functional specificity among ribosomal proteins regulates gene expression. Cell 131:557-571. (Pubitemid 350007691)
    • (2007) Cell , vol.131 , Issue.3 , pp. 557-571
    • Komili, S.1    Farny, N.G.2    Roth, F.P.3    Silver, P.A.4
  • 45
    • 0031771373 scopus 로고    scopus 로고
    • Comparative mapping between arabidopsis thaliana and brassica nigra indicates that brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements
    • Lagercrantz, U. (1998). Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements. Genetics 150: 1217-1228.
    • (1998) Genetics , vol.150 , pp. 1217-1228
    • Lagercrantz, U.1
  • 46
    • 33750938146 scopus 로고    scopus 로고
    • Preferential duplication in the sparse part of yeast protein interaction network
    • Li, L., Huang, Y., Xia, X., and Sun, Z. (2006). Preferential duplication in the sparse part of yeast protein interaction network. Mol. Biol. Evol. 23: 2467-2473.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 2467-2473
    • Li, L.1    Huang, Y.2    Xia, X.3    Sun, Z.4
  • 47
    • 0032144727 scopus 로고    scopus 로고
    • Rapid genomic changes in newly synthesized amphiploids of triticum and aegilops. II. changes in low-copy coding dna sequences
    • Liu, B., Vega, J.M., and Feldman, M. (1998). Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. II. Changes in low-copy coding DNA sequences. Genome 41: 535-542.
    • (1998) Genome , vol.41 , pp. 535-542
    • Liu, B.1    Vega, J.M.2    Feldman, M.3
  • 48
    • 0036889244 scopus 로고    scopus 로고
    • Non-mendelian phenomena in allopolyploid genome evolution
    • DOI 10.2174/1389202023350255
    • Liu, B., and Wendel, J.F. (2002). Non-Mendelian phenomena in allopolyploid genome evolution. Curr. Genomics 3: 489-505. (Pubitemid 35331905)
    • (2002) Current Genomics , vol.3 , Issue.6 , pp. 489-505
    • Liu, B.1    Wendel, J.F.2
  • 49
    • 13144251179 scopus 로고    scopus 로고
    • Plant conserved non-coding sequences and paralogue evolution
    • DOI 10.1016/j.tig.2004.11.013, PII S0168952504003154
    • Lockton, S., and Gaut, B.S. (2005). Plant conserved non-coding sequences and paralogue evolution. Trends Genet. 21: 60-85. (Pubitemid 40178851)
    • (2005) Trends in Genetics , vol.21 , Issue.1 , pp. 60-65
    • Lockton, S.1    Gaut, B.S.2
  • 50
    • 0038192129 scopus 로고    scopus 로고
    • Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana
    • Lukens, L., Zou, F., Lydiate, D., Parkin, I., and Osborn, T. (2003). Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana. Genetics 164: 359-372.
    • (2003) Genetics , vol.164 , pp. 359-372
    • Lukens, L.1    Zou, F.2    Lydiate, D.3    Parkin, I.4    Osborn, T.5
  • 51
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • DOI 10.1126/science.290.5494.1151
    • Lynch, M., and Conery, J.S. (2000). The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155. (Pubitemid 30840676)
    • (2000) Science , vol.290 , Issue.5494 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 52
    • 0037270015 scopus 로고    scopus 로고
    • The evolutionary demography of duplicate genes
    • Lynch, M., and Conery, J.S. (2003). The evolutionary demography of duplicate genes. J. Struct. Funct. Genomics 3: 35-44.
    • (2003) J. Struct. Funct. Genomics , vol.3 , pp. 35-44
    • Lynch, M.1    Conery, J.S.2
  • 53
    • 4744343021 scopus 로고    scopus 로고
    • The altered evolutionary trajectories of gene duplicates
    • Lynch, M., and Katju, V. (2004). The altered evolutionary trajectories of gene duplicates. Trends Genet. 20: 544-549.
    • (2004) Trends Genet , vol.20 , pp. 544-549
    • Lynch, M.1    Katju, V.2
  • 55
    • 17844379449 scopus 로고    scopus 로고
    • Chromosome triplication found across the tribe Brassiceae
    • DOI 10.1101/gr.3531105
    • Lysak, M.A., Koch, M.A., Pecinka, A., and Schubert, I. (2005). Chromosome triplication found across the tribe Brassiceae. Genome Res. 15:516-525. (Pubitemid 41065010)
    • (2005) Genome Research , vol.15 , Issue.4 , pp. 516-525
    • Lysak, M.A.1    Koch, M.A.2    Pecinka, A.3    Schubert, I.4
  • 57
    • 34250640609 scopus 로고    scopus 로고
    • Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus
    • Malik, M.R., Wang, F., Dirpaul, J.M., Zhou, N., Polowick, P.L., Ferrie, A.M.R., and Krochko, J.E. (2007). Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus. Plant Physiol. 144: 134-154.
    • (2007) Plant Physiol. , vol.144 , pp. 134-154
    • Malik, M.R.1    Wang, F.2    Dirpaul, J.M.3    Zhou, N.4    Polowick, P.L.5    Ferrie, A.M.R.6    Krochko, J.E.7
  • 58
    • 0345255239 scopus 로고    scopus 로고
    • Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny
    • Martínez-Castilla, L.P., and Alvarez-Buylla, E.R. (2003). Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny. Proc. Natl. Acad. Sci. USA 100: 13407-13412.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 13407-13412
    • Martínez-Castilla, L.P.1    Alvarez-Buylla, E.R.2
  • 60
    • 0142227209 scopus 로고    scopus 로고
    • Regulated release of L13a from the 60S ribosomal subunit as a mechanism of transcript-specific translational control
    • DOI 10.1016/S0092-8674(03)00773-6
    • Mazumder, B., Sampath, P., Seshadri, V., Maitra, R.K., DiCorleto, P.E., and Fox, P.L. (2003). Regulated release of L13a from the 60S ribosomal subunit as a mechanism of transcript-specific translational control. Cell 115: 187-198. (Pubitemid 37329582)
    • (2003) Cell , vol.115 , Issue.2 , pp. 187-198
    • Mazumder, B.1    Sampath, P.2    Seshadri, V.3    Maitra, R.K.4    Dicorleto, P.E.5    Fox, P.L.6
  • 61
    • 24044496959 scopus 로고    scopus 로고
    • The two ribosomal protein L23A genes are differentially transcribed in Arabidopsis thaliana
    • Mcintosh, K.B., and Bonham-Smith, P.C. (2005). The two ribosomal protein L23A genes are differentially transcribed in Arabidopsis thaliana. Genome 48: 443-454.
    • (2005) Genome , vol.48 , pp. 443-454
    • Mcintosh, K.B.1    Bonham-Smith, P.C.2
  • 63
    • 27844526579 scopus 로고    scopus 로고
    • Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana
    • Mondragon-Palomino, M., and Gaut, B.S. (2005). Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana. Mol. Biol. Evol. 22: 2444-2456.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 2444-2456
    • Mondragon-Palomino, M.1    Gaut, B.S.2
  • 64
    • 3142599364 scopus 로고    scopus 로고
    • Knock-out of the plastid ribosomal protein S21 causes impaired photosynthesis and sugar-response during germination and seedling development in Arabidopsis thaliana
    • Morita-Yamamuro, C., Tsutsui, T., Tanaka, A., and Yamaguchi, J. (2004). Knock-out of the plastid ribosomal protein S21 causes impaired photosynthesis and sugar-response during germination and seedling development in Arabidopsis thaliana. Plant Cell Physiol. 45: 781-788.
    • (2004) Plant Cell Physiol. , vol.45 , pp. 781-788
    • Morita-Yamamuro, C.1    Tsutsui, T.2    Tanaka, A.3    Yamaguchi, J.4
  • 65
    • 27144456802 scopus 로고    scopus 로고
    • Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
    • Nicot, N., Hausman, J.F., Hoffmann, L., and Evers, D. (2005). Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J. Exp. Bot. 56: 2907-2914.
    • (2005) J. Exp. Bot. , vol.56 , pp. 2907-2914
    • Nicot, N.1    Hausman, J.F.2    Hoffmann, L.3    Evers, D.4
  • 67
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • DOI 10.1038/nature01771
    • Papp, B., Pál, C., and Hurst, L.D. (2003). Dosage sensitivity and the evolution of gene families in yeast. Nature 424: 194-197. (Pubitemid 36858686)
    • (2003) Nature , vol.424 , Issue.6945 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 68
    • 0034880954 scopus 로고    scopus 로고
    • Knock-out of the plastid ribosomal protein L11 in Arabidopsis: Effects on mRNA translation and photosynthesis
    • Pesaresi, P., Varotto, C., Meurer, J., Jahns, P., Salamini, F., and Leister, D. (2001). Knock-out of the plastid ribosomal protein L11 in Arabidopsis: Effects on mRNA translation and photosynthesis. Plant J. 27: 179-189.
    • (2001) Plant J. , vol.27 , pp. 179-189
    • Pesaresi, P.1    Varotto, C.2    Meurer, J.3    Jahns, P.4    Salamini, F.5    Leister, D.6
  • 70
    • 0001614321 scopus 로고
    • Ovule development in wild-type arabidopsis and two female-sterile mutants
    • Robinson-Beers, K., Pruitt, R.E., and Gasser, C.S. (1992). Ovule development in wild-type Arabidopsis and two female-sterile mutants. Plant Cell 4: 1237-1249.
    • (1992) Plant Cell , vol.4 , pp. 1237-1249
    • Robinson-Beers, K.1    Pruitt, R.E.2    Gasser, C.S.3
  • 71
    • 0037440150 scopus 로고    scopus 로고
    • IDEG6: A web tool for detection of differentially expressed genes in multiple tag sampling experiments
    • Romualdi, C., Bortoluzzi, S., D'Alessi, F., and Danieli, G.A. (2003). IDEG6: A web tool for detection of differentially expressed genes in multiple tag sampling experiments. Physiol. Genomics 12: 159-162. (Pubitemid 37139695)
    • (2003) Physiological Genomics , vol.12 , pp. 159-162
    • Romualdi, C.1    Bortoluzzi, S.2    D'Alessi, F.3    Danieli, G.A.4
  • 72
    • 38049038829 scopus 로고    scopus 로고
    • A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast
    • Scannen, D.R., and Wolfe, K.H. (2008). A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast. Genome Res. 18: 137-147.
    • (2008) Genome Res. , vol.18 , pp. 137-147
    • Scannen, D.R.1    Wolfe, K.H.2
  • 73
    • 0034866855 scopus 로고    scopus 로고
    • Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
    • DOI 10.1105/tpc.13.8.1749
    • Shaked, H., Kashkush, K., Ozkan, H., Feldman, M., and Levy, A.A. (2001). Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13: 1749-1759. (Pubitemid 32781988)
    • (2001) Plant Cell , vol.13 , Issue.8 , pp. 1749-1759
    • Shaked, H.1    Kashkush, K.2    Ozkan, H.3    Feldman, M.4    Levy, A.A.5
  • 75
    • 0015707780 scopus 로고
    • Unequal crossover and the evolution of multigene families
    • Smith, G.P. (1973). Unequal crossover and the evolution of multigene families. Cold Spring Harb. Symp. Quant. Biol. 38: 507-513.
    • (1973) Cold Spring Harb. Symp. Quant. Biol. , vol.38 , pp. 507-513
    • Smith, G.P.1
  • 76
    • 0011913051 scopus 로고
    • Lectins stimulate pollen germination
    • Southworth, D. (1975). Lectins stimulate pollen germination. Nature 258: 600-602.
    • (1975) Nature , vol.258 , pp. 600-602
    • Southworth, D.1
  • 77
    • 4644282569 scopus 로고    scopus 로고
    • A Populus EST resource for plant functional genomics
    • Stěrky, F., et al. (2004). A Populus EST resource for plant functional genomics. Proc. Natl. Acad. Sci. USA 101: 13951-13956.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 13951-13956
    • Stěrky, F.1
  • 78
    • 5044252972 scopus 로고    scopus 로고
    • Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome
    • DOI 10.1534/genetics.104.028944
    • Subramanian, S., and Kumar, S. (2004). Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome. Genetics 168: 373-381. (Pubitemid 39346602)
    • (2004) Genetics , vol.168 , Issue.1 , pp. 373-381
    • Subramanian, S.1    Kumar, S.2
  • 79
    • 85047700164 scopus 로고    scopus 로고
    • The rapid evolution of reproductive proteins
    • Swanson, W.J., and Vacquier, V.D. (2002). The rapid evolution of reproductive proteins. Nat. Rev. Genet. 3: 137-143.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 137-143
    • Swanson, W.J.1    Vacquier, V.D.2
  • 80
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994). CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 81
    • 0036100820 scopus 로고    scopus 로고
    • Coding sequence divergence between two closely related plant species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis
    • Tiffin, P., and Hahn, M.W. (2002). Coding sequence divergence between two closely related plant species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis. J. Mol. Evol. 54: 746-753.
    • (2002) J. Mol. Evol. , vol.54 , pp. 746-753
    • Tiffin, P.1    Hahn, M.W.2
  • 82
    • 10844254878 scopus 로고    scopus 로고
    • Rapid evolution through gene duplication and subfunctionalization of the testes-specific a4 proteasome subunits in Drosophila
    • Torgerson, D.G., and Singh, R.S. (2004). Rapid evolution through gene duplication and subfunctionalization of the testes-specific a4 proteasome subunits in Drosophila. Genetics 168: 1421-1432.
    • (2004) Genetics , vol.168 , pp. 1421-1432
    • Torgerson, D.G.1    Singh, R.S.2
  • 83
    • 0030239397 scopus 로고    scopus 로고
    • A transposon insertion in the Arabidopsis SSR16 gene causes an embryo-defective lethal mutation
    • Tsugeki, R., Kochieva, E.Z., and Fedoroff, N.V. (1996). A transposon insertion in the Arabidopsis SSR16 gene causes an embryo-defective lethal mutation. Plant J. 10: 479-489.
    • (1996) Plant J. , vol.10 , pp. 479-489
    • Tsugeki, R.1    Kochieva, E.Z.2    Fedoroff, N.V.3
  • 84
    • 0028342633 scopus 로고
    • An S18 ribosomal protein gene copy at the Arabidopsis PFL locus affects plant development by its specific expression in meristems
    • Van Lijsebettens, M., Vanderhaeghen, R., De Block, M., Bauw, G., Villarroel, R., and Van Montagu, M. (1994). An S18 ribosomal protein gene copy at the Arabidopsis PFL locus affects plant development by its specific expression in meristems. EMBO J. 13: 3378-3388.
    • (1994) EMBO J. , vol.13 , pp. 3378-3388
    • Van Lijsebettens, M.1    Vanderhaeghen, R.2    De Block, M.3    Bauw, G.4    Villarroel, R.5    Van Montagu, M.6
  • 85
    • 48949115115 scopus 로고    scopus 로고
    • Cellular reactions to gene dosage imbalance: Genomic, transcriptomic and proteomic effects
    • Veitia, R.A., Bottani, S., and Birchler, J.A. (2008). Cellular reactions to gene dosage imbalance: Genomic, transcriptomic and proteomic effects. Trends Genet. 24: 390-397.
    • (2008) Trends Genet. , vol.24 , pp. 390-397
    • Veitia, R.A.1    Bottani, S.2    Birchler, J.A.3
  • 86
    • 0034671866 scopus 로고    scopus 로고
    • The origins of genomic duplications in Arabidopsis
    • Vision, TJ., Brown, D.G., and Tanksley, S.D. (2000). The origins of genomic duplications in Arabidopsis. Science 290: 2114-2117.
    • (2000) Science , vol.290 , pp. 2114-2117
    • Vision, T.J.1    Brown, D.G.2    Tanksley, S.D.3
  • 87
    • 0036011014 scopus 로고    scopus 로고
    • Early stages of seed development in brassica napus: A seed with coat-specific cysteine proteinase associated with programmed cell death of the inner integument
    • Wan, L., Xia, Q., Qui, Q., and Selvaraj, G. (2002). Early stages of seed development in Brassica napus: A seed with coat-specific cysteine proteinase associated with programmed cell death of the inner integument. Plant J. 30: 1-10.
    • (2002) Plant J. , vol.30 , pp. 1-10
    • Wan, L.1    Xia, Q.2    Qui, Q.3    Selvaraj, G.4
  • 88
    • 0035173004 scopus 로고    scopus 로고
    • An Arabidopsis Minute-like phenotype caused by a semi-dominant mutation in a ribosomal protein S5 gene
    • Weijers, D., Franke-van Dijk, M., Venchken, R.-J., Qunit, A., Hooykass, P., and Offringa, R. (2001). An Arabidopsis Minute-like phenotype caused by a semi-dominant mutation in a ribosomal protein S5 gene. Development 128: 4289-4299.
    • (2001) Development , vol.128 , pp. 4289-4299
    • Weijers, D.1    Franke-van Dijk, M.2    Venchken, R.-J.3    Qunit, A.4    Hooykass, P.5    Offringa, R.6
  • 89
    • 34447498666 scopus 로고    scopus 로고
    • Gender-specific selection on codon usage in plant genomes
    • Whittle, C.A., Malik, M.R., and Krochko, J.E. (2007). Gender-specific selection on codon usage in plant genomes. BMC Genomics 8:169-179.
    • (2007) BMC Genomics , vol.8 , pp. 169-179
    • Whittle, C.A.1    Malik, M.R.2    Krochko, J.E.3
  • 90
    • 0029328360 scopus 로고
    • Developmental regulation of ribosomal protein L16 genes in arabidopsis thaliana
    • Williams, M.E., and Sussex, L.M. (1995). Developmental regulation of ribosomal protein L16 genes in Arabidopsis thaliana. Plant J. 8: 65-76.
    • (1995) Plant J. , vol.8 , pp. 65-76
    • Williams, M.E.1    Sussex, L.M.2
  • 91
    • 4143122090 scopus 로고    scopus 로고
    • Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata
    • Wright, S.I., Yau, C.B., Loosely, M., and Myers, C. (2004). Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata. Mol. Biol. Evol. 21: 1719-1726.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1719-1726
    • Wright, S.I.1    Yau, C.B.2    Loosely, M.3    Myers, C.4
  • 93
    • 0027139972 scopus 로고    scopus 로고
    • RNA and protein synthesis in sperm cells isolated from Zea mays L. pollen. Sex
    • Zhang, G., Gifford, D.J., and Cass, D.D. (2004). RNA and protein synthesis in sperm cells isolated from Zea mays L. pollen. Sex. Plant Reprod. 6: 239-243.
    • (2004) Plant Reprod. , vol.6 , pp. 239-243
    • Zhang, G.1    Gifford, D.J.2    Cass, D.D.3
  • 94
    • 0348013059 scopus 로고    scopus 로고
    • Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGS) in the Arabidopsis thaliana genome?
    • Zhang, L., and Gaut, B.S. (2003). Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGS) in the Arabidopsis thaliana genome? Genome Res. 13: 2533-2540.
    • (2003) Genome Res. , vol.13 , pp. 2533-2540
    • Zhang, L.1    Gaut, B.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.