Purification and biochemical characterization of a novel thermoactive fungal pectate lyase from Penicillium occitanis

Process Biochemistry

Volumn 46, Issue 4, 2011, Pages 888-893

  Damak, Naourez ^a   Hadj Taieb, Noomen ^a   Bonnin, Estelle ^b   Ben Bacha, Abir ^c   Gargouri, Ali ^a  

^a UNIVERSITY OF SFAX   (Tunisia)

^b INRA   (France)

^c Faculté des Sciences de Sfax   (Tunisia)

Author keywords

Alkalophilicity; Pectate lyase; Pectin; Penicillium; Thermoactivity

Indexed keywords

ALKALOPHILICITY; PECTATE LYASE; PECTIN; PENICILLIUM; THERMOACTIVITY;

POSITIVE IONS;

PURIFICATION;

MALUS X DOMESTICA; PENICILLIUM; PENICILLIUM OCCITANIS;

EID: 79952314170     PISSN: 13595113     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.procbio.2010.12.014     Document Type: Article

References (48)

1. J.A. De Vries, A.G.J. Voragen, F.M. Roumbouts, and W. Pilnik Structural studies of apple pectins with pectolytic enzymes M.L. Fishman, J.J. Jenn, Chemistry and function of pectins 1986 American Chemical Society Washington DC 38 48
2. A.G.J. Voragen, W. Pilnik, and J.F. Thibault Pectins A.M. Stephen, Food polysaccharides and their applications 1995 Marcel Dekker New York 287 339
3. I. Alkorta, C. Garbisu, M.J. Llama, and J.L. Serra Industrial applications of pectic enzymes - a review Process Biochem 33 1998 21 28 (Pubitemid 28128138)
4. N.G. Sathyanarayana, and T. Panda Purification and biochemical properties of microbial pectinases - a review Process Biochem 38 2003 987 996 (Pubitemid 36639375)
5. F. Barras, F. van Gijsegem, and A.K. Chatterjee Extracellular enzymes and soft-rot Erwinia Annu Rev Phytopathol 32 1994 201 234
6. M.P. Starr, and F. Moran Eliminative split of pectic substances by phytopathogenic soft-rot bacteria Science 135 1962 920 921
7. A. Fuchs The trans-eliminative breakdown of Na-polygalacturonate by Pseudomonas fluorescens Antonie van Leeuwenhoek J Microbiol Ser 31 1964 323 340
8. M. Sato, and A. Kaji Purification and proprieties of pectate lyase produced by Streptomyces fradiae IFO3439 Agric Biol Chem 39 1975 564 572
9. G. Kozianowski, F. Canganella, F.A. Rainey, H. Hippe, and G. Antranikian Purification and characterization of thermostable pectate-lyases from a newly isolated thermophilic bacterium, Thermoanaerobacter italicus sp. nov Extremophiles 1 1997 171 182 (Pubitemid 127467240)
10. C.-H. Liao, W. Fett, S.S. Tzean, and G. Hoffman Detection and sequence analysis of an altered pectate lyase gene in Pseudomonas syringae pv. glycinea and related bacteria Can J Microbiol 52 2006 1051 1059
11. S. Berensmeier, S.A. Singh, J. Meens, and K. Buchholz Cloning of the PelA gene from Bacillus licheniformis 14A and biochemical characterization of recombinant, thermostable, high-alkaline pectate lyase Appl Microbiol Biotechnol 64 4 2004 560 567 (Pubitemid 38686167)
12. A. Yoshida, Y. Matsuo, Y. Kamio, and K. Izaki Molecular cloning and sequencing of the extracellular pectate lyase II gene from Erwinia carotovora Er Biosci Biotechnol Biochem 56 1992 1596 1600
13. M.S. Crawford, and P.E. Kolattukudy Pectate lyase from Fusarium solani f. sp. pisi: purification, characterization, in vitro translation of the mRNA, and involvement in pathogenicity Arch Biochem Biophys 258 1 1987 196 205
14. L. González-Candelas, A. Cortell, and D. Ramon Construction of a recombinant wine yeast strain expressing a fungal pectate lyase gene FEMS Microbiol Lett 126 1995 263 269
15. W. Guo, L. González-Candelas, and P.E. Kolattukudy Cloning of a new pectate lyase gene PelC from Fusarium solani f. sp. pisi (Nectria haematococca, mating type VI) and characterization of the gene product expressed in Pichia pastoris Arch Biochem Biophys 323 2 1995 352 360
16. J.A. Benen, H.C. Kester, L. Parenicová, and J. Visser Characterization of Aspergillus niger pectate lyase A Biochemistry 39 50 2000 15563 15569 (Pubitemid 32002784)
17. Q.X. Zhao, S. Yuan, Y.L. Zhang, H. Zhu, C.C. Dai, and F. Yang Expression, purification and characterization of pectate lyase A from Aspergillus nidulans in Escherichia coli World J Microbiol Biotechnol 23 2007 1057 1064 (Pubitemid 47106849)
18. Q.X. Zhao, R. Ding, Y. Kang, and J. Chen Expression of pectate lyase A from Aspergillus nidulans in Bacillus subtilis World J Microbiol Biotechnol 24 2008 2607 2612
19. B. Henrissat, S.E. Heffron, M.D. Yoder, S.E. Lietzke, and F. Jurnak Functional implication of structure-based sequence alignment of proteins in the extracellular pectate lyase superfamily Plant Physiol 107 1995 963 976
20. S. Heffron, B. Henrissat, M.D. Yoder, S. Lietzke, and F. Jurnak Structure-based multiple alignment of extracellular pectate lyase sequences Mol Plant Microbe Interact 8 1995 331 334
21. F.M. Rombouts, and W. Pilnik Enzymes in fruit and vegetable juice technology Process Biochem 18 1978 9 13
22. B.G. Klug-Santer, W. Schnitzhofer, M. Vrsanka, J. Weber, P.B. Agrawal, and V.A. Nierstrasz Purification and characterization of a new bioscouring pectate lyase from Bacillus pumilus BK2 J Biotechnol 121 2006 390 401 (Pubitemid 43113112)
23. M. Takao, T. Nakaniwa, K. Yoshikawa, T. Terashita, and T. Sakai Purification and characterization of thermostable pectate lyase with protopectinase activity from thermophilic Bacillus sp. TS 47 Biosci Biotechnol Biochem 64 2000 2360 2367
24. L.D. Kluskens, G-JWM Van Alebeek, A.G.J. Voragen, W.M. De Vos, and J.V. Van Der Oost Molecular and biochemical characterization of the thermoactive family1 pectate lyase from the hyperthermophilic bacterium Thermotoga maritima Biochem J 370 2003 651 659 (Pubitemid 36315153)
25. S. Basu, A. Ghosh, M.N. Saha, D. Chattopadhyay, and K. Chakarabarti Thermodynamic characterization of a highly thermoactive extracellular pectate lyase from a new isolate Bacillus pumilus DKS1 Bioresour Technol 99 17 2008 8088 8094
26. S.A. Singh, M. Ramakrishna, and A.G.A. Rao Optimization of downstream processing parameters for the recovery of pectinase from the fermented broth of Aspergillus carbonarious Process Biochem 35 1999 411 417 (Pubitemid 29533741)
27. N. Hadj-Taieb, M. Ayadi, S. Trigui, F. Bouabdallah, and A. Gargouri Hyperproduction of pectinase activities by a fully constitutive mutant (CT1) of Penicillium occitanis Enzyme Microb Technol 30 2002 662 666 (Pubitemid 34327702)
28. M. Mandels, R. Andreotti, and C. Roche Measurement of saccharifying cellulase Biotechnol Bioeng Symp 6 1976 21 33
29. M.M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principal of protein-dye binding Anal Biochem 72 1976 248 254
30. U.K. Laemmli Cleavage of structural proteins during the assembly of the head of the bacteriophage T4 Nature 227 1970 680 685
31. D. Pitt Pectin lyase from Phoma medicaginis var pinodella W.A. Wood, S.T. Kellogg, Methods in enzymology 1988 Academic Press 161. San Diego 350 354
32. H. Lineweaver, and D. Burk The determination of enzyme dissociation constants J Am Chem Soc 56 1934 658 666
33. N. Hadj-Taieb, M. Khlif, M. Ayadi, K. Mrad, I. Hassairi, and A. Gargouri Fermentor production of pectinases on gruel (wheat grinding sub-product) and their use in olive oil extraction Enzyme Microb Technol 39 2006 1072 1076 (Pubitemid 44081945)
34. S.H. Denison pH regulation of gene expression in fungi - a review Fungal Genet Biol 29 2 2000 61 71 (Pubitemid 30440237)
35. A. Payasi, R. Sanwal, and G.G. Sanwal Microbial pectate lyases: characterization and enzymological properties - a review World J Microb Biotechnol 25 1 2009 1 14
36. N.D. Fedorova, N. Khaldi, V.S. Joardar, R. Maiti, P. Amedeo, and M.J. Anderson Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus Plos Genet 4 2008 e1000046 10.1371/journal.pgen.1000046
37. S.A Sing, H. Plattner, and H. Diekmann Exopolygalacturonate lyase from a thermophilic Bacillus sp Enzyme Microb Technol 25 1999 420 425
38. V.E. Shevchik, G. Condemine, J. Robert-Baudouy, and N. Hugouvieux-Cotte-Pattat The exopolygalacturonate lyase PelW and oligogalacturonate lyase Ogl, two cytoplasmic enzymes of pectin catabolism in Erwinia chrysanthemi 3937 J Bacteriol 181 1999 3912 3919 (Pubitemid 29295907)
39. B.G. Klug-Santner, W. Schnitzhofer, M. Vršanská, J. Weber, P.B. Agrawal, and V.A. Nierstrasz Purification and characterization of a new bioscouring pectate lyase from Bacillus pumilus BK2 J Biotechnol 121 2006 390 401 (Pubitemid 43113112)
40. M. Soriano, P. Diaz, and F.I.J. Pastor Pectate lyase C from Bacillus subtilis: a novel endo-cleaving enzyme with activity on highly methylated pectin Microbiology 152 2006 617 625
41. D.Y. Marilyn, and J. Frances The refined three-dimensional structure of pectate lyase C from Erwinia chrysanthemi at 2.2 Angstrom resolution "implications for an enzymatic mechanism" Plant Physiol 107 1995 349 364
42. T. Kobayashi, Y. Hatada, N. Higaki, D.D. Lusterio, T. Ozawa, and K. Koike Enzymatic properties and deduced amino acid sequence of a high-alkaline pectate lyase from an alkaliphilic Bacillus isolate Biochim Biophys Acta 1427 1999 145 154 (Pubitemid 29182766)
43. W. Nasser, F. Calet, and J. Robert-Baudouy Purification and characterization of extracellular pectate lyase from Bacillus subtilis Biochimie 72 1990 689 695 (Pubitemid 20384582)
44. A. Di Pietro, and M.I.G. Roncero Purification and characterization of a pectate lyase from Fusarium oxysporum f.sp. lycopersici produced on tomato vascular tissue Physiol Mol Plant Pathol 49 3 1996 177 185 (Pubitemid 27025131)
45. V.E. Shevchik, H.C.M. Kester, J.A.E. Benen, J. Visser, Robeert-BaudouyJ, and N. Hugouvieux-Cotte-Pattat Characterization of the exopolygalacturonate lyase PelX of Erwinia chrysanthemi 3973 J Bacteriol 181 1999 1652 1663 (Pubitemid 29110828)
46. M.D. Yoder, N.T. Keen, and F. Jurnak New domain motif: the structure of pectate lyase C, a secreted plant virulence factor Science 260 1993 1503 1507 (Pubitemid 23273264)
47. M.D. Yoder, S.E. Lietzke, and F. Jurnak Unusual structural features in the parallel β-helix in pectate lyases Structure 1 1993 241 251 (Pubitemid 2031115)
48. S. Solis, J. Loeza, G. Segura, J. Tello, N. Reyes, and P. Lappe Hydrolysis of orange peel by a pectin lyase-overproducing hybrid obtained by protoplast fusion between mutant pectinolytic Aspergillus flavipes and Aspergillus niveus Enzyme Microb Technol 44 2009 123 128