-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffet, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffet, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
1842300339
-
Detection of cutinases and pectic enzymes during infection of tomato by Pseudomonas syringae pv. tomato
-
Bashan, Y., Okon, Y., and Henis, Y. 1985. Detection of cutinases and pectic enzymes during infection of tomato by Pseudomonas syringae pv. tomato. Phytopathology, 75: 940-945.
-
(1985)
Phytopathology
, vol.75
, pp. 940-945
-
-
Bashan, Y.1
Okon, Y.2
Henis, Y.3
-
3
-
-
0031127163
-
Molecular cloning, characterization, and mutagenesis of a pel gene from Pseudomonas syringae pv. lachrymans encoding a member of the Erwinia chrysanthemi Pel ADE family of pectate lyases
-
Bauer, D.W., and Collmer, A. 1997. Molecular cloning, characterization, and mutagenesis of a pel gene from Pseudomonas syringae pv. lachrymans encoding a member of the Erwinia chrysanthemi Pel ADE family of pectate lyases. Mol. Plant-Microbe Interact. 10: 369-379.
-
(1997)
Mol. Plant-Microbe Interact
, vol.10
, pp. 369-379
-
-
Bauer, D.W.1
Collmer, A.2
-
4
-
-
0041335630
-
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
-
Buell, C.R., Joardar, V., Lindeberg, M., Lindberg, M., Selengut, J., Paulsen, I.T., Gwinn, M.L., et al. 2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc. Natl. Acad. Sci. U.S.A. 100: 10181-10186.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A
, vol.100
, pp. 10181-10186
-
-
Buell, C.R.1
Joardar, V.2
Lindeberg, M.3
Lindberg, M.4
Selengut, J.5
Paulsen, I.T.6
Gwinn, M.L.7
-
5
-
-
0029104083
-
Nucleotide sequence of a pectate lyase structural gene, pel1 of Erwinia carotovora subsp. carotovora strain 71 and structural relationship of pel1 with other pel genes of Erwinia species
-
Chatterjee, A., Liu, Y., and Chatterjee, A.K. 1995. Nucleotide sequence of a pectate lyase structural gene, pel1 of Erwinia carotovora subsp. carotovora strain 71 and structural relationship of pel1 with other pel genes of Erwinia species. Mol. Plant-Microbe Interact. 8: 92-95.
-
(1995)
Mol. Plant-Microbe Interact
, vol.8
, pp. 92-95
-
-
Chatterjee, A.1
Liu, Y.2
Chatterjee, A.K.3
-
6
-
-
77957028197
-
Assay methods for pectic enzymes
-
Collmer, A., Ried, J.L., and Mount, M.S. 1988. Assay methods for pectic enzymes. Methods Enzymol. 161: 329-335.
-
(1988)
Methods Enzymol
, vol.161
, pp. 329-335
-
-
Collmer, A.1
Ried, J.L.2
Mount, M.S.3
-
7
-
-
0037161811
-
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
-
da Silva, A.C.R., Ferro, J.A., Reinach, F.C., Farah, L.R., Furlan, R.B., Quaggio, R.B., et al. 2002. Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature (London), 417: 459-463.
-
(2002)
Nature (London)
, vol.417
, pp. 459-463
-
-
da Silva, A.C.R.1
Ferro, J.A.2
Reinach, F.C.3
Farah, L.R.4
Furlan, R.B.5
Quaggio, R.B.6
-
8
-
-
23344451933
-
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000
-
Feil, H., Feil, W.S., Chain, P., Larimer, F., diBatoto, G., Copeland, A., et al. 2005. Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc. Natl. Acad. Sci. U.S.A. 102: 11064-11069.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 11064-11069
-
-
Feil, H.1
Feil, W.S.2
Chain, P.3
Larimer, F.4
diBatoto, G.5
Copeland, A.6
-
9
-
-
33846976568
-
-
Felsenstein, J. 2004. PHYLIP Phylogeny Inference Package, Version 3.6. Department of Genome Sciences, University of Washington, Seattle, Wash, USA. Available from, accessed 20 July 2005
-
Felsenstein, J. 2004. PHYLIP (Phylogeny Inference Package). Version 3.6. Department of Genome Sciences, University of Washington, Seattle, Wash., USA. Available from http://evolution.genetics.washington.edu/phylip.html [accessed 20 July 2005].
-
-
-
-
10
-
-
33846980862
-
-
Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser 41: 95-98.
-
Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser 41: 95-98.
-
-
-
-
11
-
-
0029257488
-
Structure-based multiple alignment of extracellular pectate lyase sequences
-
Heffron, S., Henrissat, B., Yoder, M.D., Lietzke, S., and Jurnak, F. 1995. Structure-based multiple alignment of extracellular pectate lyase sequences. Mol. Plant-Microbe Interact. 8: 331-334.
-
(1995)
Mol. Plant-Microbe Interact
, vol.8
, pp. 331-334
-
-
Heffron, S.1
Henrissat, B.2
Yoder, M.D.3
Lietzke, S.4
Jurnak, F.5
-
12
-
-
0029257437
-
Functional implications of structure-based sequence alignment of proteins in the extracellular pectate lyase superfamily
-
Henrissat, B., Heffron, S.E., Yoder, M.D., Lietzke, S.E., and Jurnak, F. 1995. Functional implications of structure-based sequence alignment of proteins in the extracellular pectate lyase superfamily. Plant Physiol. 107: 963-976.
-
(1995)
Plant Physiol
, vol.107
, pp. 963-976
-
-
Henrissat, B.1
Heffron, S.E.2
Yoder, M.D.3
Lietzke, S.E.4
Jurnak, F.5
-
13
-
-
0001320835
-
Pectate and pectin gels for differentiation of Pseudomonas sp., and other bacterial plant pathogens
-
Hildebrand, D.C. 1971. Pectate and pectin gels for differentiation of Pseudomonas sp., and other bacterial plant pathogens. Phytopathology, 61: 1430-1436.
-
(1971)
Phytopathology
, vol.61
, pp. 1430-1436
-
-
Hildebrand, D.C.1
-
14
-
-
24944453122
-
Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition
-
Joardar, V., Lindeberg, M., Jackson, R.W., Selengut, J., Dodson, R., Brinkac, L.M., et al. 2005. Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J. Bacteriol. 187: 6488-6498.
-
(2005)
J. Bacteriol
, vol.187
, pp. 6488-6498
-
-
Joardar, V.1
Lindeberg, M.2
Jackson, R.W.3
Selengut, J.4
Dodson, R.5
Brinkac, L.M.6
-
15
-
-
0025875884
-
Cloning of pectate lyase gene pel from Pseudomonas fluorescens and detection of sequences homologous to pel in Pseudomonas viridiflava and Pseudomonas putida
-
Liao, C.-H. 1991. Cloning of pectate lyase gene pel from Pseudomonas fluorescens and detection of sequences homologous to pel in Pseudomonas viridiflava and Pseudomonas putida. J. Bacteriol. 173: 4386-4393.
-
(1991)
J. Bacteriol
, vol.173
, pp. 4386-4393
-
-
Liao, C.-H.1
-
16
-
-
0000905412
-
An extracellular pectate lyase is the pathogenicity factor of the soft-rotting bacterium Pseudomonas viridiflava
-
Liao, C.-H., Hung, H.Y., and Chatterjee, A.K. 1988. An extracellular pectate lyase is the pathogenicity factor of the soft-rotting bacterium Pseudomonas viridiflava. Mol. Plant-Microbe Interact. 1: 199-206.
-
(1988)
Mol. Plant-Microbe Interact
, vol.1
, pp. 199-206
-
-
Liao, C.-H.1
Hung, H.Y.2
Chatterjee, A.K.3
-
17
-
-
0026887880
-
Cloning and characterization of a pectate lyase gene from the soft-rotting bacterium Pseudomonas viridiflava
-
Liao, C.-H., Sasaki, K., Nagahashi, G., and Hicks, K.B. 1992. Cloning and characterization of a pectate lyase gene from the soft-rotting bacterium Pseudomonas viridiflava. Mol. Plant-Microbe Interact. 5: 301-308.
-
(1992)
Mol. Plant-Microbe Interact
, vol.5
, pp. 301-308
-
-
Liao, C.-H.1
Sasaki, K.2
Nagahashi, G.3
Hicks, K.B.4
-
18
-
-
0030019268
-
Cloning of a pectate lyase gene from Xanthomonas campestris pv. malvacearum and comparison of its sequence relationship with pel genes of soft-rot Erwinia and Pseudomonas
-
Liao, C.-H., Gaffney, T.D., Bradley, S.P., and Wong, L.J. 1996. Cloning of a pectate lyase gene from Xanthomonas campestris pv. malvacearum and comparison of its sequence relationship with pel genes of soft-rot Erwinia and Pseudomonas. Mol. Plant-Microbe Interact. 9: 14-21.
-
(1996)
Mol. Plant-Microbe Interact
, vol.9
, pp. 14-21
-
-
Liao, C.-H.1
Gaffney, T.D.2
Bradley, S.P.3
Wong, L.J.4
-
19
-
-
0033492928
-
Genetic and biochemical characterization of an exopolygalacturonase and a pectate lyase from Yersinia enterocolitica
-
Liao, C.-H., Revear, L., Hotchkiss, A., and Savary, B. 1999. Genetic and biochemical characterization of an exopolygalacturonase and a pectate lyase from Yersinia enterocolitica. Can. J. Microbiol. 45: 396-403.
-
(1999)
Can. J. Microbiol
, vol.45
, pp. 396-403
-
-
Liao, C.-H.1
Revear, L.2
Hotchkiss, A.3
Savary, B.4
-
20
-
-
85005497391
-
Pectolytic enzymes from interactions between Pseudomonas syringae pv. phaseolicola and French bean (Phaseolus vulgaris)
-
Longland, A.C., Slusarenko, A.J., and Friend, J. 1992. Pectolytic enzymes from interactions between Pseudomonas syringae pv. phaseolicola and French bean (Phaseolus vulgaris). J. Phytopathol. 134: 75-86.
-
(1992)
J. Phytopathol
, vol.134
, pp. 75-86
-
-
Longland, A.C.1
Slusarenko, A.J.2
Friend, J.3
-
21
-
-
0028154388
-
Pectolytic enzymes produced by Pseudomonas syringae pv. glycinea
-
Magro, P., Varvaro, L., Chilosi, G., Avanzo, C., and Balestra, G.M. 1994. Pectolytic enzymes produced by Pseudomonas syringae pv. glycinea. FEMS Microbiol. Lett. 117: 1-6.
-
(1994)
FEMS Microbiol. Lett
, vol.117
, pp. 1-6
-
-
Magro, P.1
Varvaro, L.2
Chilosi, G.3
Avanzo, C.4
Balestra, G.M.5
-
22
-
-
33846945838
-
-
NCBI National Center for Biotechnology Information, Available from, accessed 20 May 2005
-
NCBI (National Center for Biotechnology Information). 2005. GenBank. Available from http://www.ncbi.nlm..nih.gov [accessed 20 May 2005].
-
(2005)
GenBank
-
-
-
23
-
-
0027619736
-
Molecular cloning and nucleotide sequence of the pectate lyase gene from Pseudomonas marginalis N6301
-
Nikaidou, N., Kamio, Y., and Izaki, K. 1993. Molecular cloning and nucleotide sequence of the pectate lyase gene from Pseudomonas marginalis N6301. Biosci. Biotechnol. Biochem. 57: 957-960.
-
(1993)
Biosci. Biotechnol. Biochem
, vol.57
, pp. 957-960
-
-
Nikaidou, N.1
Kamio, Y.2
Izaki, K.3
-
24
-
-
0034623005
-
T-Coffee: A novel method for multiple sequence alignments
-
Notredame, C., Higgins, D., and Heringa, J. 2000. T-Coffee: a novel method for multiple sequence alignments. J. Mol. Biol. 302: 205-217.
-
(2000)
J. Mol. Biol
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.2
Heringa, J.3
-
25
-
-
77956684067
-
Extracellular enzymes and their role in Erwinia virulence
-
Py, B., Barras, F., Harris, S., Robson, N., and Salmond, G.P.C. 1998. Extracellular enzymes and their role in Erwinia virulence. Methods Microbiol. 27: 157-168.
-
(1998)
Methods Microbiol
, vol.27
, pp. 157-168
-
-
Py, B.1
Barras, F.2
Harris, S.3
Robson, N.4
Salmond, G.P.C.5
-
26
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y, USA
-
Sambrook, J., Fritsch, E.F., and Maniatis, T.A. 1989. Molecular cloning. 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., USA.
-
(1989)
Molecular cloning
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.A.3
-
27
-
-
0025271478
-
Signal transduction in bacteria
-
Stock, J.B., Stock, A.M., and Mottonen, M. 1990. Signal transduction in bacteria. Nature (London), 344: 395-400.
-
(1990)
Nature (London)
, vol.344
, pp. 395-400
-
-
Stock, J.B.1
Stock, A.M.2
Mottonen, M.3
-
28
-
-
0024060080
-
Structure and organization of the pel genes from Erwinia chrysanthemi EC16
-
Tamaki, S.J., Gold, S., Robeson, M., Manuli, S., and Keen, N.T. 1988. Structure and organization of the pel genes from Erwinia chrysanthemi EC16. J. Bacteriol. 70: 3468-3478.
-
(1988)
J. Bacteriol
, vol.70
, pp. 3468-3478
-
-
Tamaki, S.J.1
Gold, S.2
Robeson, M.3
Manuli, S.4
Keen, N.T.5
-
29
-
-
0024744316
-
Relationship between the pel genes of the pelADE cluster in Erwinia chrysanthemi strain B374
-
Van Gijsegem, F. 1989. Relationship between the pel genes of the pelADE cluster in Erwinia chrysanthemi strain B374. Mol. Microbiol. 3: 1415-1424.
-
(1989)
Mol. Microbiol
, vol.3
, pp. 1415-1424
-
-
Van Gijsegem, F.1
-
30
-
-
0029141684
-
The refined three-dimensional structure of pectate lyase C from Erwinia chrysanthemi at 2.2 Å resolution
-
Yoder, M.D., and Jurnak, F. 1995. The refined three-dimensional structure of pectate lyase C from Erwinia chrysanthemi at 2.2 Å resolution. Plant Physiol. 107: 349-364.
-
(1995)
Plant Physiol
, vol.107
, pp. 349-364
-
-
Yoder, M.D.1
Jurnak, F.2
-
31
-
-
0026934137
-
Molecular cloning and sequencing of the extracellular pectate lyase II gene from Erwinia carotovora Er
-
Yoshida, A., Matsuo, Y., Kamio, Y., and Izaki, K. 1992. Molecular cloning and sequencing of the extracellular pectate lyase II gene from Erwinia carotovora Er. Biosci. Biotechnol. Biochem. 56: 1596-1600.
-
(1992)
Biosci. Biotechnol. Biochem
, vol.56
, pp. 1596-1600
-
-
Yoshida, A.1
Matsuo, Y.2
Kamio, Y.3
Izaki, K.4
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