메뉴 건너뛰기




Volumn 1427, Issue 2, 1999, Pages 145-154

Enzymatic properties and deduced amino acid sequence of a high-alkaline pectate lyase from an alkaliphilic Bacillus isolate

Author keywords

Alkaliphile; Bacillus; Cloning; Pectate lyase; Secondary structure prediction; Trans elimination

Indexed keywords

PECTATE LYASE;

EID: 0032908426     PISSN: 03044165     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0304-4165(99)00017-3     Document Type: Article
Times cited : (54)

References (39)
  • 2
    • 0027818642 scopus 로고
    • Pectin, pectinase, and protopectinase: Production, properties, and applications
    • Sakai T., Sakamoto T., Hallaert J., Vandamme E.J. Pectin, pectinase, and protopectinase: production, properties, and applications. Adv. Appl. Microbiol. 39:1993;213-294.
    • (1993) Adv. Appl. Microbiol. , vol.39 , pp. 213-294
    • Sakai, T.1    Sakamoto, T.2    Hallaert, J.3    Vandamme, E.J.4
  • 3
    • 0010881453 scopus 로고
    • Eliminative split of pectic substances by phytopathogenic soft-rot bacteria
    • Starr M.P., Moran F. Eliminative split of pectic substances by phytopathogenic soft-rot bacteria. Science. 135:1962;920-921.
    • (1962) Science , vol.135 , pp. 920-921
    • Starr, M.P.1    Moran, F.2
  • 4
    • 0030944441 scopus 로고    scopus 로고
    • Comparative analysis of the five major Erwinia chrysanthemi pectate lyases: Enzyme characteristics and potential inhibitors
    • Tardy F., Nasser W., Robert-Baudouy J., Hugouvieux-Cotte-Pattat N. Comparative analysis of the five major Erwinia chrysanthemi pectate lyases: enzyme characteristics and potential inhibitors. J. Bacteriol. 179:1997;2503-2511.
    • (1997) J. Bacteriol. , vol.179 , pp. 2503-2511
    • Tardy, F.1    Nasser, W.2    Robert-Baudouy, J.3    Hugouvieux-Cotte-Pattat, N.4
  • 5
    • 0013832551 scopus 로고
    • The trans-eliminative breakdown of Na-polygalacturonase by Pseudomonas fluorescens
    • Fuchs A. The trans-eliminative breakdown of Na-polygalacturonase by Pseudomonas fluorescens. Antonie van Leeuwenhoek. 31:1964;323-340.
    • (1964) Antonie Van Leeuwenhoek , vol.31 , pp. 323-340
    • Fuchs, A.1
  • 6
    • 33947481151 scopus 로고
    • Purification and properties of polygalacturonic acid trans-eliminase produced by Clostridium multifermentas
    • Macmillan J.D., Vaughn R.H. Purification and properties of polygalacturonic acid trans-eliminase produced by Clostridium multifermentas. Biochemistry. 3:1964;564-572.
    • (1964) Biochemistry , vol.3 , pp. 564-572
    • MacMillan, J.D.1    Vaughn, R.H.2
  • 7
    • 0016618125 scopus 로고
    • Purification and properties of pectate lyase produced by Streptomyces fradiae IFO3439
    • Sato M., Kaji A. Purification and properties of pectate lyase produced by Streptomyces fradiae IFO3439. Agric. Biol. Chem. 39:1975;819-824.
    • (1975) Agric. Biol. Chem. , vol.39 , pp. 819-824
    • Sato, M.1    Kaji, A.2
  • 8
    • 0028803413 scopus 로고
    • Purification and characterization of an extracellular pectate lyase from an Amycolata sp.
    • Bruhlmann F. Purification and characterization of an extracellular pectate lyase from an Amycolata sp. Appl. Environ. Microbiol. 61:1995;3580-3585.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3580-3585
    • Bruhlmann, F.1
  • 9
    • 0023434016 scopus 로고
    • Pectate lyase from Fusarium solani f.sp. pisi: Purification, characterization, in vitro translation of the mRNA, and involvement in pathogenicity
    • Crawford M.S., Kolattukudy P.E. Pectate lyase from Fusarium solani f.sp. pisi: purification, characterization, in vitro translation of the mRNA, and involvement in pathogenicity. Arch. Biochem. Biophys. 258:1987;196-205.
    • (1987) Arch. Biochem. Biophys. , vol.258 , pp. 196-205
    • Crawford, M.S.1    Kolattukudy, P.E.2
  • 10
    • 0031267241 scopus 로고    scopus 로고
    • Purification and characterization of thermostable pectate-lyases from a newly isolated thermophilic bacterium, Thermoanaerobacter italicus sp. nov.
    • Kozianowski G., Canganella F., Rainey F.A., Hippe H., Antranikian G. Purification and characterization of thermostable pectate-lyases from a newly isolated thermophilic bacterium, Thermoanaerobacter italicus sp. nov. Extremophiles. 1:1997;171-182.
    • (1997) Extremophiles , vol.1 , pp. 171-182
    • Kozianowski, G.1    Canganella, F.2    Rainey, F.A.3    Hippe, H.4    Antranikian, G.5
  • 12
    • 0029257437 scopus 로고
    • Functional implications of structure-based sequence alignment of proteins in the extracellular pectate lyase superfamily
    • Henrissat B., Heffron S.E., Yoder M.D., Litzke S.E., Jurnak F. Functional implications of structure-based sequence alignment of proteins in the extracellular pectate lyase superfamily. Plant Physiol. 107:1995;963-976.
    • (1995) Plant Physiol. , vol.107 , pp. 963-976
    • Henrissat, B.1    Heffron, S.E.2    Yoder, M.D.3    Litzke, S.E.4    Jurnak, F.5
  • 13
    • 0027329090 scopus 로고
    • New domain motif: The structure of pectate lyase C, a secreted plant virulence factor
    • Yoder M.D., Keen N.T., Jurnak F. New domain motif: the structure of pectate lyase C, a secreted plant virulence factor. Science. 260:1993;1503-1507.
    • (1993) Science , vol.260 , pp. 1503-1507
    • Yoder, M.D.1    Keen, N.T.2    Jurnak, F.3
  • 14
    • 0028191528 scopus 로고
    • The three-dimensional structure of pectate lyase E, a plant virulence factor from Erwinia chrysanthemi
    • Litzke S.E., Yoder M.D., Keen N.T., Jurnak F. The three-dimensional structure of pectate lyase E, a plant virulence factor from Erwinia chrysanthemi. Plant physiol. 106:1994;849-862.
    • (1994) Plant Physiol. , vol.106 , pp. 849-862
    • Litzke, S.E.1    Yoder, M.D.2    Keen, N.T.3    Jurnak, F.4
  • 16
    • 0032142727 scopus 로고    scopus 로고
    • Alkaline detergent enzymes from alkaliphiles: Enzymatic properties, genetics, and structures
    • Ito S., Kobayashi T., Ara K., Ozaki K., Kawai S., Hatada Y. Alkaline detergent enzymes from alkaliphiles: enzymatic properties, genetics, and structures. Extremophiles. 2:1998;185-190.
    • (1998) Extremophiles , vol.2 , pp. 185-190
    • Ito, S.1    Kobayashi, T.2    Ara, K.3    Ozaki, K.4    Kawai, S.5    Hatada, Y.6
  • 17
    • 84981856229 scopus 로고
    • A new pectic acid trans-eliminase produced exocellularly by a Bacillus
    • Hasegawa S., Nagel C.W. A new pectic acid trans-eliminase produced exocellularly by a Bacillus. J. Food Sci. 31:1966;838-845.
    • (1966) J. Food Sci. , vol.31 , pp. 838-845
    • Hasegawa, S.1    Nagel, C.W.2
  • 18
    • 0041160259 scopus 로고
    • Some characteristics of an endo-pectate lyase produced by a thermophilic Bacillus isolated from olives
    • Karbassi A., Luh B.S. Some characteristics of an endo-pectate lyase produced by a thermophilic Bacillus isolated from olives. J. Food Sci. 44:1979;1156-1161.
    • (1979) J. Food Sci. , vol.44 , pp. 1156-1161
    • Karbassi, A.1    Luh, B.S.2
  • 19
    • 85008120727 scopus 로고
    • Purification, characterization, and production of two pectic transeliminases with protopectinase activity from Bacillus subtilis
    • Sakamoto T., Hours R.A., Sakai T. Purification, characterization, and production of two pectic transeliminases with protopectinase activity from Bacillus subtilis. Biosci. Biotechnol. Biochem. 58:1994;353-358.
    • (1994) Biosci. Biotechnol. Biochem. , vol.58 , pp. 353-358
    • Sakamoto, T.1    Hours, R.A.2    Sakai, T.3
  • 20
    • 0025005810 scopus 로고
    • Purification and characterization of extracellular pectate lyase from Bacillus subtilis
    • Nasser W., Chalet F., Robert-Baudouy J. Purification and characterization of extracellular pectate lyase from Bacillus subtilis. Biochimie. 72:1990;689-695.
    • (1990) Biochimie , vol.72 , pp. 689-695
    • Nasser, W.1    Chalet, F.2    Robert-Baudouy, J.3
  • 21
    • 0010709058 scopus 로고
    • Polygalacturonate lyase of a Bacillus species associated with increase in permeability of Sitka Spruce (Picea sitchensis)
    • Ward O.P., Fogarty W.M. Polygalacturonate lyase of a Bacillus species associated with increase in permeability of Sitka Spruce (Picea sitchensis). J. Gen. Microbiol. 73:1972;439-446.
    • (1972) J. Gen. Microbiol. , vol.73 , pp. 439-446
    • Ward, O.P.1    Fogarty, W.M.2
  • 22
    • 0001027570 scopus 로고
    • Spectrophotometric analyzers for disk electrophoresis: Studies of yeast cytochrome c
    • Taber H.W., Sherman F. Spectrophotometric analyzers for disk electrophoresis: studies of yeast cytochrome c. Ann. NY Acad. Sci. 121:1964;600-615.
    • (1964) Ann. NY Acad. Sci. , vol.121 , pp. 600-615
    • Taber, H.W.1    Sherman, F.2
  • 23
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 227:1970;680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 24
    • 50549178319 scopus 로고
    • Preparation of transforming deoxyribonucleic acid by phenol treatment
    • Saito H., Miura K. Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim. Biophys. Acta. 72:1963;619-629.
    • (1963) Biochim. Biophys. Acta , vol.72 , pp. 619-629
    • Saito, H.1    Miura, K.2
  • 26
    • 0024194040 scopus 로고
    • Protopectinase from yeasts and a yeastlike fungus
    • Sakai T. Protopectinase from yeasts and a yeastlike fungus. Methods Enzymol. 161:1988;335-350.
    • (1988) Methods Enzymol. , vol.161 , pp. 335-350
    • Sakai, T.1
  • 27
    • 0027360579 scopus 로고
    • Pectate lyase from Bacillus subtilis; Molecular characterization of the gene, and properties of the cloned enzyme
    • Nasser W., Awade A.C., Reverchon S., Robert-Baudouy J. Pectate lyase from Bacillus subtilis; molecular characterization of the gene, and properties of the cloned enzyme. FEBS Lett. 335:1993;319-326.
    • (1993) FEBS Lett. , vol.335 , pp. 319-326
    • Nasser, W.1    Awade, A.C.2    Reverchon, S.3    Robert-Baudouy, J.4
  • 28
    • 0024060080 scopus 로고
    • Structure and organization of the pel genes from Erwinia chrysanthemi EC16
    • Tamaki S.J., Gold S., Robeson M., Manulis S., Keen N.T. Structure and organization of the pel genes from Erwinia chrysanthemi EC16. J. Bacteriol. 170:1988;3468-3478.
    • (1988) J. Bacteriol. , vol.170 , pp. 3468-3478
    • Tamaki, S.J.1    Gold, S.2    Robeson, M.3    Manulis, S.4    Keen, N.T.5
  • 29
    • 0023036933 scopus 로고
    • Structure of two pectate lyase genes from Erwinia chrysanthemi EC16 and their high-level expression in Escherichia coli
    • Keen N., Tamaki S. Structure of two pectate lyase genes from Erwinia chrysanthemi EC16 and their high-level expression in Escherichia coli. J. Bacteriol. 168:1986;595-606.
    • (1986) J. Bacteriol. , vol.168 , pp. 595-606
    • Keen, N.1    Tamaki, S.2
  • 30
    • 0023880326 scopus 로고
    • Characterization of the Erwinia carotovora pelA gene and its product pectate lyase A
    • Lei S.-P., Lin H.-C., Wang S.-S., Wilcox G. Characterization of the Erwinia carotovora pelA gene and its product pectate lyase A. Gene. 62:1988;159-164.
    • (1988) Gene , vol.62 , pp. 159-164
    • Lei, S.-P.1    Lin, H.-C.2    Wang, S.-S.3    Wilcox, G.4
  • 31
    • 0024853451 scopus 로고
    • Extracellular and periplasmic isoenzymes of pectate lyase from Erwinia carotovora subspecies carotovora belong to different gene families
    • Hinton J.C.D., Sidebotham J.M., Gill D.R., Salmond G.P.C. Extracellular and periplasmic isoenzymes of pectate lyase from Erwinia carotovora subspecies carotovora belong to different gene families. Mol. Microbiol. 3:1989;1785-1795.
    • (1989) Mol. Microbiol. , vol.3 , pp. 1785-1795
    • Hinton, J.C.D.1    Sidebotham, J.M.2    Gill, D.R.3    Salmond, G.P.C.4
  • 32
    • 0026887880 scopus 로고
    • Cloning and characterization of a pectate lyase gene from the soft-rotting bacterium Pseudomonas viridiflava
    • Liao C.-H., Sasaki K., Nagahashi G., Hicks K.B. Cloning and characterization of a pectate lyase gene from the soft-rotting bacterium Pseudomonas viridiflava. Mol. Plant-Microb. Interact. 5:1992;301-308.
    • (1992) Mol. Plant-Microb. Interact. , vol.5 , pp. 301-308
    • Liao, C.-H.1    Sasaki, K.2    Nagahashi, G.3    Hicks, K.B.4
  • 33
    • 0028898476 scopus 로고
    • Sequence analysis of the Aspergillus nidulans pectate lyase pelA gene and evidence for binding promoter regions to CREA, a regulator of carbon catabolite repression
    • Ho M.-C., Whitehead M.P., Cleveland T.E., Dean R.A. Sequence analysis of the Aspergillus nidulans pectate lyase pelA gene and evidence for binding promoter regions to CREA, a regulator of carbon catabolite repression. Curr. Genet. 27:1995;142-149.
    • (1995) Curr. Genet. , vol.27 , pp. 142-149
    • Ho, M.-C.1    Whitehead, M.P.2    Cleveland, T.E.3    Dean, R.A.4
  • 34
    • 0000268209 scopus 로고
    • Protein secondary structure prediction with a neural network
    • Holley L.H., Karplus M. Protein secondary structure prediction with a neural network. Proc. Natl. Acad. Sci. USA. 86:1989;152-156.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 152-156
    • Holley, L.H.1    Karplus, M.2
  • 35
  • 36
    • 1842800737 scopus 로고
    • Understanding enzyme-catalyzed proton abstraction from carbon acids: Details of stepwise mechanisms for β-elimination reactions
    • Gerlt J.A., Gassman P.G. Understanding enzyme-catalyzed proton abstraction from carbon acids: details of stepwise mechanisms for β-elimination reactions. J. Am. Chem. Soc. 114:1992;5928-5930.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 5928-5930
    • Gerlt, J.A.1    Gassman, P.G.2
  • 37
    • 0029845535 scopus 로고    scopus 로고
    • Role of lysine, tryptophan and calcium in the β-elimination activity of a low-molecular-mass pectate lyase from Fusarium moniliformae
    • Rao M.N., Kembhavi A.A., Pant A. Role of lysine, tryptophan and calcium in the β-elimination activity of a low-molecular-mass pectate lyase from Fusarium moniliformae. Biochem. J. 319:1996;159-164.
    • (1996) Biochem. J. , vol.319 , pp. 159-164
    • Rao, M.N.1    Kembhavi, A.A.2    Pant, A.3
  • 38
    • 0029861087 scopus 로고    scopus 로고
    • Differential effect of site-directed mutations in pelC on pectate lyase activity, plant tissue maceration, and elicitor activity
    • Kita N., Boyd C.M., Garrett M.R., Jurnak F., Keen N.T. Differential effect of site-directed mutations in pelC on pectate lyase activity, plant tissue maceration, and elicitor activity. J. Biol. Chem. 271:1996;26529-26535.
    • (1996) J. Biol. Chem. , vol.271 , pp. 26529-26535
    • Kita, N.1    Boyd, C.M.2    Garrett, M.R.3    Jurnak, F.4    Keen, N.T.5
  • 39
    • 0028116179 scopus 로고
    • A stable isotope-aided NMR study of the active site of an endoglucanase from a strain of Bacillus
    • Kawaminami S., Ozaki K., Sumitomo N., Hayashi Y., Ito S., Shimada I., Arata Y. A stable isotope-aided NMR study of the active site of an endoglucanase from a strain of Bacillus. J. Biol. Chem. 269:1994;28752-28756.
    • (1994) J. Biol. Chem. , vol.269 , pp. 28752-28756
    • Kawaminami, S.1    Ozaki, K.2    Sumitomo, N.3    Hayashi, Y.4    Ito, S.5    Shimada, I.6    Arata, Y.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.