Salinivibrio sharmensis sp. nov., a novel haloalkaliphilic bacterium from a saline lake in Ras Mohammed Park (Egypt)

Extremophiles

Volumn 15, Issue 2, 2011, Pages 213-220

  Romano, Ida ^a   Orlando, Pierangelo ^b   Gambacorta, Agata ^a   Nicolaus, Barbara ^a   Dipasquale, Laura ^a   Pascual, Javier ^c   Giordano, Assunta ^a   Lama, Licia ^a  

^a CNR Consiglio Nazionale delle Ricerche   (Italy)

^b INSTITUTE OF PROTEIN BIOCHEMISTRY   (Italy)

^c UNIVERSITY OF VALENCIA   (Spain)

Author keywords

Extremophilic; Fatty acid methyl ester; Haloalkaliphilic; Phylogeny; Quinone; Salinivibrio

Indexed keywords

CARBOHYDRATE; DNA; LIPID; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE;

ARTICLE; CHEMISTRY; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; TEMPERATURE; VIBRIONACEAE;

CARBOHYDRATES; DNA; HYDROGEN-ION CONCENTRATION; LIPIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHATIDYLETHANOLAMINES; PHOSPHATIDYLGLYCEROLS; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SODIUM CHLORIDE; TEMPERATURE; VIBRIONACEAE; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; SALINIVIBRIO; SALINIVIBRIO COSTICOLA SUBSP. ALCALIPHILUS;

EID: 79952252544     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-010-0349-9     Document Type: Article

References (36)

1. Amoozegar MA, Schumann P, Hajighasemi M, Fatemi AZ, Karbalaei-Heidari HR (2008) Salinivibrio proteolyticus sp. nov., a moderately halophilic and proteolytic species from a hypersaline lake in Iran. Int J Syst Evol Microbiol 58: 1159-1163.
2. Asker D, Ohta Y (2002) Haloferax alexandrinus sp. nov., an extremely halophilic canthaxanthin-producing archaeon from a solar saltern in Alexandria (Egypt). Int J Syst Evol Microbiol 52: 729-738.
3. Chamroensaksri N, Tanasupawat S, Akaracharanya A, Visessanguan W, Kudo T, Itoh T (2009) Salinivibrio siamensis sp. nov., from fermented fish (pla-ra) in Thailand. Int J Syst Evol Microbiol 59: 880-885.
4. Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK, Lim YW (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57: 2259-2261.
5. Dussault HP (1955) An improved technique for staining red halophilic bacteria. J Bacteriol 70: 484-485.
6. Friedman GM (1985) Gulf of Elat (Aqaba), geological and sedimentological framework. Hypersaline ecosystems: the Gavish Sabkha. Ecol Stud Anal Synth 53: 39-71.
7. Halebian S, Harris B, Finegold SM, Rolfe RD (1981) Rapid method that aids in distinguishing Gram-positive from Gram-negative anaerobic bacteria. J Clin Microbiol 13: 444-448.
8. Hezayen FF, Rehm BHA, Tindall BJ, Steinbüchel A (2001) Transfer of Natrialba asiatica B1T to Natrialba taiwanensis sp. nov. and description of Natrialba aegyptiaca sp. nov., a novel extremely halophilic, aerobic, non-pigmented member of the Archaea from Egypt that produces extracellular poly(glutamic acid). Int J Syst Evol Microbiol 51: 1133-1142.
9. Hezayen FF, Tindall BJ, Steinbüchel A, Rehm BHA (2002) Characterization of a novel halophilic archaeon, Halobiforma haloterrestris gen. nov., sp. nov., and transfer of Natronobacterium nitratireducens to Halobiforma nitratireducens comb. nov. Int J Syst Evol Microbiol 52: 2271-2280.
10. Huang CY, Garcia JL, Patel BKC, Cayol JL, Baresi L, Mah RA (2000) Salinivibrio costicola subsp. vallismortis subsp. nov., a halotolerant facultative anaerobe from Death Valley, and emended description of Salinivibrio costicola. Int J Syst Evol Microbiol 50: 615-622.
11. Karbalaei-Heidari HR, Ziaee AA, Amoozegar MA, Cheburkin Y, Budisa N (2008) Molecular cloning and sequence analysis of a novel zinc-metalloprotease gene from the Salinivibrio sp. strain AF-2004 and its extracellular expression in E. coli. Gene 408: 196-203.
12. Krumbein WE, Gorbushina AA, Holtkamp-Tacken E (2004) Hypersaline microbial systems of sabkhas: examples of life's survival in "extreme" conditions. Astrobiology 4: 450-459.
13. Lama L, Romano I, Calandrelli V, Nicolaus B, Gambacorta A (2005) Purification and characterization of a protease produced by an aerobic haloalkaliphilic species belonging to the Salinivibrio genus. Res Microbiol 156: 478-484.
14. Lim JM, Yoon JH, Lee JC, Jeon CO, Park DJ, Sung C, Kim CJ (2004) Halomonas koreensis sp. nov., a novel moderately halophilic bacterium isolated from a solar saltern in Korea. Int J Syst Evol Microbiol 54: 2037-2042.
15. Mellado E, Moore ERB, Nieto JJ, Ventosa A (1996) Analysis of 16S rRNA gene sequences of Vibrio costicola strains: description of Salinivibrio costicola gen. nov., comb. nov. Int J Syst Bacteriol 46: 817-821.
16. Motta A, Romano I, Gambacorta A (2004) Rapid and sensitive NMR method for osmolyte determination. J Microbiol Methods 58: 289-294.
17. Oren A (2002) Diversity of halophilic microorganisms: environments, phylogeny, physiology, and applications. J Ind Microbiol Biotechnol 28: 56-63.
18. Oren A, Ventosa A, Gutiérrez MC, Kamekura M (1999) Haloarcula quadrata sp. nov., a square, motile archaeon isolated from a brine pool in Sinai (Egypt). Int J Syst Bacteriol 49: 1149-1155.
19. Poli A, Romano I, Cordella P, Orlando P, Nicolaus B, Ceschi Berrini C (2009) Anoxybacillus thermarum sp. nov., a novel thermophilic bacterium isolated from thermal mud in Euganean hot springs, Abano Terme, Italy. Extremophiles 13: 867-874.
20. Posada D (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
21. Rao MB, Tanksale AM, Ghatge MS, Deshpande VV (1998) Molecular and biotechnological aspects of microbial proteases. Microbiol Mol Biol Rev 62: 597-635.
22. Romano I, Manca MC, Lama L, Nicolaus B, Gambacorta A (1993) A method for antibiotic assay on Sulfolobales. Biotechnol Tech 7: 439-440.
23. Romano I, Nicolaus B, Lama L, Trabasso D, Caracciolo G, Gambacorta A (2001) Accumulation of osmoprotectants and lipid pattern modulation in response to growth conditions by Halomonas pantelleriense. Syst Appl Microbiol 24: 342-352.
24. Romano I, Gambacorta A, Lama L, Nicolaus B, Giordano A (2005) Salinivibrio costicola subsp. alcaliphilus subsp. nov., a haloalkaliphilic aerobe from Campania Region (Italy). Syst Appl Microbiol 28: 34-42.
25. Romano I, Lama L, Orlando P, Nicolaus B, Giordano A, Gambacorta A (2007) Halomonas sinaiensis sp. nov., a novel halophilic bacterium isolated from a salt lake inside Ras Muhammad Park, Egypt. Extremophiles 11: 789-796.
26. Romano I, Dipasquale L, Orlando P, Lama L, d' Ippolito G, Pascual J, Gambacorta A (2010) Thermoanaerobacterium thermostercus sp. nov., a new anaerobic thermophilic hydrogen-producing bacterium from buffalo-dung. Extremophiles 14: 233-240.
27. Ronimus RS, Parker LE, Morgan HW (1997) The utilization of RAPD-PCR for identifying thermophilic and mesophilic Bacillus species. FEMS Microbiol Lett 147: 75-79.
28. Sànchez-Porro C, Mellado E, Bertoldo C, Antranikian G, Ventosa A (2003) Screening and characterization of the protease CP1 produced by the moderately halophilic bacterium Pseudoalteromonas sp. strain CP76. Extremophiles 7: 221-228.
29. Sànchez-Porro C, Mellado E, Pugsley AP, Francetic O, Ventosa A (2009) The haloprotease CPI produced by the moderately halophilic bacterium Pseudoalteromonas ruthenica is secreted by the type II secretion pathway. Appl Environ Microbiol 75: 4197-4201.
30. Smith FB (1938) An investigation of a taint in rib bones of bacon. The determination of halophilic vibrios (n. spp.). Proc Royal Soc Qld 49: 29-52.
31. Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44: 846-849.
32. Swofford DL (2002) PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4. 0b10. Sinauer Associates, Sunderland.
33. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
34. Ventosa A, Quesada E, Rodriguez-Valera F, Ruiz-Berraquero F, Ramos-Cormenzana A (1982) Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128: 1959-1968.
35. Versalovic J, Schneider M, de Bruijn FJ, Lupski JR (1994) Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Meth Mol Cell Biol 5: 25-40.
36. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Trüper HG (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37: 463-464.