Analysis of 16S rRNA gene sequences of Vibrio costicola strains: Description of Salinivibrio costicola gen. nov., comb. nov.

International Journal of Systematic Bacteriology

Volumn 46, Issue 3, 1996, Pages 817-821

  Mellado, E ^a,b   Moore, E R B ^b   Nieto, J J ^a   Ventosa, A ^a  

^a UNIVERSITY OF SEVILLE   (Spain)

^b HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; GENE SEQUENCE; NONHUMAN; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; VIBRIO;

EID: 0029679810     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-46-3-817     Document Type: Article

References (34)

1. Adkins, J. P., M. T. Madigan, L. Mandelco, C. R. Woese, and R. S. Tanner. 1993. Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a subterranean brine. Int. J. Syst. Bacteriol. 43:514-520.
2. Baumann, P., A. L. Furniss, and J. V. Lee. 1984. Genus Vibrio, p. 518-538. In N. R. Krieg and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 1. The Williams & Wilkins Co., Baltimore.
3. Brenner, D. J., G. R. Fanning, F. W. Hickman-Brenner, A. G. Steigerwalt, B. R. Davis, and J. J. Farmer III. 1983. DNA relatedness among Vibrionaceae, with emphasis on the Vibrio species associated with human infection, p. 175-184. In H. Leclerc (ed.), Les bacilles à gram négatif d'intéret médical et en santé publique. INSERM, Paris.
4. Dobson, S. J., T. A. McMeekin, and P. D. Franzmann. 1993. Phylogenetic relationships between some members of the genera Deleya, Halomonas, and Halovibrio. Int. J. Syst. Bacteriol. 43:665-673.
5. Dorsch, M., D. Lane, and E. Stackebrandt. 1992. Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences. Int. J. Syst. Bacteriol. 42:58-63.
6. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
7. García, M. T., A. Ventosa, F. Ruiz-Berraquero, and M. Kocur. 1987. Taxonomic study and amended description of Vibrio costicola. Int. J. Syst. Bacteriol. 37:251-256.
8. Gardner, G. A. 1980. Identification and ecology of salt-requiring Vibrio associated with cured meats. Meat Sci. 5:71-81.
9. Gauthier, G., B. Lafay, R. Ruimy, V. Breittmayer, J. L. Nicolas, M. Gauthier, and R. Christen. 1995. Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al.) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov. Int. J. Syst. Bacteriol. 45:139-144.
10. Gutell, R. R., B. Weiser, C. R. Woese, and H. F. Noller. 1985. Comparative anatomy of 16S-like ribosomal RNA. Prog. Nucleic Acid Res. Mol. Biol. 32:155-216.
11. Gutiérrez, M. C., M. T. García, A. Ventosa, and F. Ruiz-Berraquero. 1989. Relationships among Vibrio costicola strains assessed by DNA-DNA hybridization. FEMS Microbiol. Lett. 61:37-40.
12. Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism. Academic Press. Inc., New York.
13. Kersters, K. 1992. The genus Deleya, p. 3189-3197. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.), The prokaryotes, 2nd ed., vol. 2. Springer-Verlag, New York.
14. Kita-Tsukamoto, K., H. Oyaizu, K. Nanba, and U. Simidu. 1993. Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences. Int. J. Syst. Bacteriol. 43:8-19.
15. Kushner, D. J. 1978. Life in high salt and solute concentrations: halophilic bacteria, p. 317-368. In D. J. Kushner (ed.), Microbial life in extreme environments. Academic Press, London.
16. Kushner, D. J., and M. Kamekura. 1988. Physiology of halophilic eubacteria, p. 109-138. In F. Rodríguez-Valera (ed.), Halophilic bacteria. CRC Press, Inc., Boca Raton, Fla.
17. Lane, D. J. 1991. 16S/23S sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, United Kingdom.
18. Maidak, B. L., N. Larsen, M. J. McCaughey, R. Overbeek, G. J. Olsen, K. Fogel, J. Blandy, and C. R. Woese. 1994. The Ribosomal Database Project. Nucleic Acids Res. 22:3485-3487.
19. Marquez, M. C., A. Ventosa, and F. Ruiz-Berraquero. 1987. A taxonomic study of heterotrophic halophilic and non-halophilic bacteria from a solar saltern. J. Gen. Microbiol. 133:45-56.
20. Mellado, E., E. R. B. Moore, J. J. Nieto, and A. Ventosa. 1995. Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina and Deleya salina, and reclassification of V. eurihalina as Halomonas eurihalina comb. nov. Int. J. Syst. Bacteriol. 45:712-716.
21. Moore, E. R. B., and R. Christen. Personal communication.
22. Olsen, G. J. 1987. The earliest phylogenetic branchings: comparing rRNA-based evolutionary trees inferred with various techniques. Cold Spring Harbor Symp. Quant. Mol. Biol. 52:825-838.
23. Quesada, E., M. J. Valderrama, V. Béjar, A. Ventosa, M. C. Gutiérrez, F. Ruiz-Berraquero, and A. Ramos-Cormenzana. 1990. Volcaniella eurihalina gen. nov., sp. nov., a moderately halophilic nonmotile gram-negative rod. Int. J. Syst. Bacteriol. 40:261-267.
24. Quesada, E., A. Ventosa, F. Rodríguez-Valera, L. Megías, and A. Ramos-Cormenzana. 1983. Numerical taxonomy of moderately halophilic Gramnegative bacteria from hypersaline soils. J. Gen. Microbiol. 129:2649-2657.
25. Quesada, E., A. Ventosa, F. Ruiz-Berraquero, and A. Ramos-Cormenzana. 1984. Deleya halophila, a new species of moderately halophilic bacteria. Int. J. Syst. Bacteriol. 34:287-292.
26. Rodríguez-Valera, F., A. Ventosa, G. Juez, and J. F. Imhoff. 1985. Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern. Microb. Ecol. 11:107-115.
27. Ruimy, R., V. Breittmayer, P. Elbaze, B. Lafay, O. Boussemart, M. Gauthier, and R. Christen. 1994. Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Pleisomonas deduced from small-subunit rRNA sequences. Int. J. Syst. Bacteriol. 44:416-426.
28. Shewan, J. M., and M. Veron. 1974. Genus Vibrio, p. 340-345. In R. E. Buchanan and N. E. Gibbons (ed.), Bergey's manual of determinative bacteriology, 8th ed. The Williams & Wilkins Co., Baltimore.
29. Smith, F. B. 1938. An investigation of a taint in rib bones of bacon. The determination of halophilic vibrios (n. spp.). Proc. R. Soc. Queensl. 49:29-52.
30. Valderrama, M. J., E. Quesada, V. Béjar, A. Ventosa, M. C. Gutiérrez, F. Ruiz-Berraquero, and A. Ramos-Cormenzana, 1991. Deleya salina sp. nov., a moderately halophilic gram-negative bacterium. Int. J. Syst. Bacteriol. 41: 377-384.
31. Ventosa, A., M. C. Gutiérrez, M. T. García, and F. Ruiz-Berraquero. 1989. Classification of "Chromobacterium marismortui" in a new genus, Chromohalobacter gen. nov., as Chromohalobacter marismortui comb. nov., nom. rev. Int. J. Syst. Bacteriol. 39:382-386.
32. Ventosa, A., E. Quesada, F. Rodríguez-Valera, F. Ruiz-Berraquero, and A. Ramos-Cormenzana. 1982. Numerical taxonomy of moderately halophilic Gram-negative rods. J. Gen. Microbiol. 128:1959-1968.
33. Vreeland, R. H. 1992. The family Halomonadaceae, p. 3181-3188. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.), The prokaryotes, 2nd ed., vol. 2. Springer-Verlag, New York.
34. Woese, C. R., R. Gutell, R. Gupta, and H. F. Noller. 1983. Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids. Microbiol. Rev. 47:621-669.