Salinivibrio costicola subsp. vallismortis subsp. nov., a halotolerant facultative anaerobe from Death Valley, and emended description of Salinivibrio costicola

International Journal of Systematic and Evolutionary Microbiology

Volumn 50, Issue 2, 2000, Pages 615-622

  Huang, Chi Yu ^a,b   Garcia, Jean Louis ^c   Patel, Bharat K C ^d   Cayol, Jean Luc ^c   Baresi, Larry ^e   Mah, Robert A ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b TUNGHAI UNIVERSITY   (Taiwan)

^c INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^d GRIFFITH UNIVERSITY   (Australia)

^e CALIFORNIA STATE UNIVERSITY   (United States)

Author keywords

Facultative anaerobe; Halotolerance; Salinivibrio costicola subsp. vallismortis subsp. nov.; Taxonomy

Indexed keywords

CARBON DIOXIDE; CYCLOSERINE; FORMIC ACID; ISOBUTYRIC ACID; LACTIC ACID; PENICILLIN G; PROPIONIC ACID; RIBOSOME RNA; STREPTOMYCIN; TETRACYCLINE;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; DNA BASE COMPOSITION; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SALINIVIBRIO COSTICOLA; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; TAXONOMY; UNITED STATES;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; SALINIVIBRIO; SALINIVIBRIO COSTICOLA; SALINIVIBRIO COSTICOLA SUBSP. VALLISMORTIS;

EID: 0034121412     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-50-2-615     Document Type: Article

References (35)

1. Andrews, K. T. & Patel, B. K. C. (1996). Fervidobacterium gondwanense sp. nov., a new thermophilic anaerobic bacterium isolated from nonvolcanically heated geothermal waters of the Great Artesian Basin of Australia. Int J Syst Bacteriol 46, 265-269.
2. Balch, W. E., Fox, G. E., Magrum, L. J., Woese, C. R. & Wolfe, R. S. (1979). Methanogens: reevaluation of a unique biological group. Microbiol Rev 43, 260-296.
3. Baumann, P. & Schubert, R. H. W. (1984). Family II. Vibrionaceae. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 516-517. Edited by N.R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
4. Cord-Ruwisch, R. (1985). A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Methods 4, 33-36.
5. Cord-Ruwisch, R., Ollivier, B. & Garcia, J.-L. (1986). Fructose degradation by Desulfovibrio sp. in pure culture and in coculture with Methanospirillum hungatei. Curr Microbiol 13, 285-289.
6. Farmer, J. J. & Hickman-Brenner, F. W. (1992). The genera Vibrio and Photobacterium. In The Prokaryotes, 2nd edn, vol. 3, pp. 2952-3001. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
7. Felsenstein, J. (1993). PHYLIP (Phylogenetic Inference Package) version 3.51c. Distributed by the author. Department of Genetics, University of Washington, Seattle, USA.
8. Galinski, E. A. & Trüper, H. G. (1982). Betaine, a compatible solute in the extremely halophilic phototrophic bacterium Ectothiorhodospira halochloris. FEMS Microbiol Lett 13, 357-360.
9. Garcia, M. T., Ventosa, A., Ruiz-Berraquero, F. & Kocur, M. (1987). Taxonomic study and amended description of Vibrio costicola. Int J Syst Bacteriol 37, 251-256.
10. Hungate, R. E. (1969). A roll tube method for the cultivation of strict anaerobes. In Methods in Microbiology, vol. 3B, pp. 117-132. Edited by J. R. Norris & D. W. Ribbons. New York: Academic Press.
11. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 211-232. Edited by H. N. Munro. New York: Academic Press.
12. Klug, M., Boston, P., Francois, R., Gyure, R., Javor, B., Tribble, G. & Vairavamurty, A. (1985). Sulfur reduction in sediments of marine and evaporite environments. In The Global Sulfur Cycle (NASA technical memorandum 87570), pp. 128-157. Edited by D. Sagan. Greenbelt, MD: National Aeronautics and Space Administration.
13. Lai, M. C. & Gunsalus, R. P. (1992). Glycine betaine and potassium ion are the major compatible solutes in the extremely halophilic methanogen Methanohalophilus strain Z7302. J Bacteriol 174, 7474-7477.
14. Lai, M. C., Sowers, K. R., Robertson, D. E., Roberts, M. F. & Gunsalus, R. P. (1991). Distribution of compatible solutes in the halophilic methanogenic archaebacteria. J Bacteriol 173, 5352-5358.
15. Larsen, H. (1962). Halophilism. In The Bacteria, vol. 4, pp. 297-342. Edited by I. C. Gunsalus & R. Y. Stanier. New York: Academic Press.
16. Liaw, H. J. & Mah, R. A. (1992). Isolation and characterization of Haloanaerobacter chitinovorans gen. nov., sp. nov., a halophilic, anaerobic, chitinolytic bacterium from a solar saltern. Appl Environ Microbiol 58, 260-266.
17. Macy, J. M., Snellen, J. E. & Hungate, R. E. (1972). Use of syringe methods for anaerobiosis. Am J Clin Nutr 25, 1318-1323.
18. Maidak, B. L., Olsen, G. J., Larsen, N., Overbeek, R., McCaughey, M. J. & Woese, C. R. (1996). The Ribosomal Database Project (RDP). Nucleic Acids Res 24, 82-85.
19. Mechichi, T., Labat, M., Woo, T. H. S., Thomas, P., Garcia, J.-L. & Patel, B. K. C. (1998). Eubacterium aggregans sp. nov., a new homoacetogenic bacterium from olive mill wastewater treatment digestor. Anaerobe 4, 283-291.
20. Mellado, E., Moore, E. R. B., Nieto, J. J. & Ventosa, A. (1996). Analysis of 16S rRNA gene sequences of Vibrio costicola strains: description of Salinivibrio costicola gen. nov., comb. nov. Int J Syst Bacteriol 46, 817-821.
21. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
22. Ollivier, B., Caumette, P., Garcia, J.-L. & Mah, R. A. (1994). Anaerobic bacteria from hypersaline environments. Microbiol Rev 58, 27-38.
23. Oren, A. (1988). Anaerobic degradation of organic compounds at high salt concentrations. Antonie Leeuwenhoek 54, 267-277.
24. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
25. Ramos-Cormenzana, A. (1993). Ecology of moderately halophilic bacteria. In The Biology of Halophilic Bacteria, pp. 55-86. Edited by R. H. Vreeland & L. I. Hochstein. Boca Raton: CRC Press.
26. Redburn, A. C. & Patel, B. K. C. (1993). Phylogenetic analysis of Desulfotomaculum thermobenzoicum using polymerase chain reaction-amplified 16S rRNA-specific DNA. FEMS Microbiol Lett 113, 81-86.
27. Reed, R. H., Borowitzka, L. J., Mackay, M. A., Chudek, J. A., Foster, R., Warr, S. R. C., Moore, D. J. & Stewart, W. D. P. (1986). Organic solute accumulation in osmotically stressed cyanobacteria. FEMS Microbiol Rev 39, 51-56.
28. Robertson, D. E., Noll, D., Roberts, M. F., Menaia, J. A. G. F. & Boone, D. R. (1990). Detection of the osmoregulator betaine in methanogens. Appl Environ Microbiol 56, 563-565.
29. Robertson, D. E., Lai, M. C., Gunsalus, R. P. & Roberts, M. F. (1992). Composition, variation, and dynamics of major osmotic solutes in Methanohalophilus strain FDFI. Appl Environ Microbiol 58, 2438-2443.
30. Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Bacteriology, pp. 409-443. Edited by P. Gerhardt, R. E. G. Murray, R. N. Sostilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Philips. Washington, DC: American Society for Microbiology.
31. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
32. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
33. Vreeland, R. H. & Hochstein, L. I. (1993). The Biology of Halophilic Bacteria. Boca Raton: CRC Press.
34. Winker, S. & Woese, C. R. (1991). A definition of the domain Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics. Syst Appl Microbiol 13, 161-165.
35. Zeikus, J. G. (1983). Metabolic communication between bio-degradative populations in nature. Symp Soc Gen Microbiol 34, 423-462.