Fluorescent proteins as light-inducible photochemical partners

Photochemical and Photobiological Sciences

Volumn 9, Issue 10, 2010, Pages 1301-1306

  Lukyanov, Konstantin A ^a   Serebrovskaya, Ekaterina O ^a   Lukyanov, Sergey ^a   Chudakov, Dmitriy M ^a  

^a SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 79951592188     PISSN: 1474905X     EISSN: 14749092     Source Type: Journal    
DOI: 10.1039/c0pp00114g     Document Type: Review

References (54)

1. D. M. Chudakov S. Lukyanov K. A. Lukyanov Fluorescent proteins as a toolkit for in vivo imaging Trends Biotechnol. 2005 23 605 613 (Pubitemid 41682374)
2. F. H. Johnson O. Shimomura Y. Saiga L. C. Gershman G. T. Reynolds J. R. Waters Quantum efficiency of Cypridina luminescence, with a note on that of Aequorea J. Cell. Comp. Physiol. 1962 60 85 103
3. D. C. Prasher V. K. Eckenrode W. W. Ward F. G. Prendergast M. J. Cormier Primary structure of the Aequorea victoria green-fluorescent protein Gene 1992 111 229 233
4. M. Chalfie Y. Tu G. Euskirchen W. W. Ward D. C. Prasher Green fluorescent protein as a marker for gene expression Science 1994 263 802 805 (Pubitemid 24093206)
5. S. Wang T. Hazelrigg Implications for bcd mRNA localization from spatial distribution of exu protein in Drosophila oogenesis Nature 1994 369 400 403 (Pubitemid 24184053)
6. M. V. Matz A. F. Fradkov Y. A. Labas A. P. Savitsky A. G. Zaraisky M. L. Markelov S. A. Lukyanov Fluorescent proteins from nonbioluminescent Anthozoa species Nat. Biotechnol. 1999 17 969 973 (Pubitemid 29474851)
7. S. H. Haddock N. Mastroianni L. M. Christianson A photoactivatable green-fluorescent protein from the phylum Ctenophora Proc. R. Soc. London, Ser. B 2010 277 1155 1160
8. D. A. Shagin E. V. Barsova Y. G. Yanushevich A. F. Fradkov K. A. Lukyanov Y. A. Labas T. N. Semenova J. A. Ugalde A. Meyers J. M. Nunez E. A. Widder S. A. Lukyanov M. V. Matz GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity Mol. Biol. Evol. 2004 21 841 850 (Pubitemid 38529726)
9. D. D. Deheyn K. Kubokawa J. K. McCarthy A. Murakami M. Porrachia G. W. Rouse N. D. Holland Endogenous green fluorescent protein (GFP) in amphioxus Biol. Bull. 2007 213 95 100 (Pubitemid 350004404)
10. B. Seefeldt R. Kasper T. Seidel P. Tinnefeld K. J. Dietz M. Heilemann M. Sauer Fluorescent proteins for single-molecule fluorescence applications J. Biophotonics 2008 1 74 82
11. D. Shcherbo E. A. Souslova J. Goedhart T. V. Chepurnykh A. Gaintzeva Shemyakina, II T. W. Gadella S. Lukyanov D. M. Chudakov Practical and reliable FRET/FLIM pair of fluorescent proteins BMC Biotechnol. 2009 9 24
12. J. Goedhart L. van Weeren M. A. Hink N. O. Vischer K. Jalink T. W. Gadella, Jr. Bright cyan fluorescent protein variants identified by fluorescence lifetime screening Nat. Methods 2010 7 137 139
13. V. V. Verkhusha K. A. Lukyanov The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins Nat. Biotechnol. 2004 22 289 296 (Pubitemid 38295761)
14. T. A. Schüttrigkeit T. Feilitzsch C. K. Kompa K. A. Lukyanov A. P. Savitsky A. A. Voityuk M. E. Michel-Beyerl Femtosecond study of light-induced fluorescence increase of the dark chromoprotein asFP595 Chem. Phys. 2006 323 149 160
15. Y. Tanaka N. Sasaki A. Ohmiya Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids Plant J. 2008 54 733 749 (Pubitemid 351678043)
16. S. J. Remington Fluorescent proteins: maturation, photochemistry and photophysics Curr. Opin. Struct. Biol. 2006 16 714 721 (Pubitemid 44827725)
17. A. A. Pakhomov V. I. Martynov GFP family: structural insights into spectral tuning Chem. Biol. 2008 15 755 764
18. M. Ormo A. B. Cubitt K. Kallio L. A. Gross R. Y. Tsien S. J. Remington Crystal structure of the Aequorea victoria green fluorescent protein Science 1996 273 1392 1395 (Pubitemid 26296528)
19. C. W. Cody D. C. Prasher W. M. Westler F. G. Prendergast W. W. Ward Chemical structure of the hexapeptide chromophore of the Aequorea green-fluorescent protein Biochemistry 1993 32 1212 1218 (Pubitemid 23070642)
20. K. A. Lukyanov D. M. Chudakov S. Lukyanov V. V. Verkhusha Innovation: Photoactivatable fluorescent proteins Nat. Rev. Mol. Cell Biol. 2005 6 885 891
21. R. Ando H. Hama M. Yamamoto-Hino H. Mizuno A. Miyawaki An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein Proc. Natl. Acad. Sci. U. S. A. 2002 99 12651 12656
22. H. Mizuno T. K. Mal K. I. Tong R. Ando T. Furuta M. Ikura A. Miyawaki Photo-induced peptide cleavage in the green-to-red conversion of a fluorescent protein Mol. Cell 2003 12 1051 1058 (Pubitemid 37352795)
23. F. V. Subach G. H. Patterson S. Manley J. M. Gillette J. Lippincott-Schwartz V. V. Verkhusha Photoactivatable mCherry for high-resolution two-color fluorescence microscopy Nat. Methods 2009 6 153 159
24. J. J. van Thor T. Gensch K. J. Hellingwerf L. N. Johnson Phototransformation of green fluorescent protein with UV and visible light leads to decarboxylation of glutamate 222 Nat. Struct. Biol. 2002 9 37 41 (Pubitemid 34049177)
25. J. N. Henderson R. Gepshtein J. R. Heenan K. Kallio D. Huppert S. J. Remington Structure and mechanism of the photoactivatable green fluorescent protein J. Am. Chem. Soc. 2009 131 4176 4177
26. L. Greenbaum C. Rothmann R. Lavie Z. Malik Green fluorescent protein photobleaching: a model for protein damage by endogenous and exogenous singlet oxygen Biol. Chem. 2000 381 1251 1258 (Pubitemid 32094437)
27. A. Jimenez-Banzo S. Nonell J. Hofkens C. Flors Singlet oxygen photosensitization by EGFP and its chromophore HBDI Biophys. J. 2008 94 168 172
28. Z. Rajfur P. Roy C. Otey L. Romer K. Jacobson Dissecting the link between stress fibres and focal adhesions by CALI with EGFP fusion proteins Nat. Cell Biol. 2002 4 286 293 (Pubitemid 34308854)
29. O. Tour R. M. Meijer D. A. Zacharias S. R. Adams R. Y. Tsien Genetically targeted chromophore-assisted light inactivation Nat. Biotechnol. 2003 21 1505 1508 (Pubitemid 37522713)
30. M. E. Bulina D. M. Chudakov O. V. Britanova Y. G. Yanushevich D. B. Staroverov T. V. Chepurnykh E. M. Merzlyak M. A. Shkrob S. Lukyanov K. A. Lukyanov A genetically encoded photosensitizer Nat. Biotechnol. 2006 24 95 99 (Pubitemid 43083172)
31. M. E. Bulina K. A. Lukyanov O. V. Britanova D. Onichtchouk S. Lukyanov D. M. Chudakov Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed Nat. Protoc. 2006 1 947 953
32. W. Waldeck G. Mueller M. Wiessler M. Brom K. Toth K. Braun Autofluorescent proteins as photosensitizer in eukaryontes Int. J. Med. Sci. 2009 6 365 373
33. E. O. Serebrovskaya E. F. Edelweiss O. A. Stremovskiy K. A. Lukyanov D. M. Chudakov S. M. Deyev Targeting cancer cells by using an antireceptor antibody-photosensitizer fusion protein Proc. Natl. Acad. Sci. U. S. A. 2009 106 9221 9225
34. A. S. Sobolev Modular transporters for subcellular cell-specific targeting of antitumor drugs BioEssays 2008 30 278 287 (Pubitemid 351341133)
35. S. Pletnev N. Gurskaya N. V. Pletneva K. A. Lukyanov D. M. Chudakov V. I. Martynov V. O. Popov M. V. Kovalchuk A. Wlodawer Z. Dauter V. Pletnev Structural basis for phototoxicity of the genetically encoded photosensitizer KillerRed J. Biol. Chem. 2009 284 32028 32039
36. P. Carpentier S. Violot L. Blanchoin D. Bourgeois Structural basis for the phototoxicity of the fluorescent protein KillerRed FEBS Lett. 2009 583 2839 2842
37. O. M. Subach V. N. Malashkevich W. D. Zencheck K. S. Morozova K. D. Piatkevich S. C. Almo V. V. Verkhusha Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins Chem. Biol. 2010 17 333 341
38. A. M. Bogdanov A. S. Mishin I. V. Yampolsky V. V. Belousov D. M. Chudakov F. V. Subach V. V. Verkhusha S. Lukyanov K. A. Lukyanov Green fluorescent proteins are light-induced electron donors Nat. Chem. Biol. 2009 5 459 461
39. A. M. Bogdanov E. A. Bogdanova D. M. Chudakov T. V. Gorodnicheva S. Lukyanov K. A. Lukyanov Cell culture medium affects GFP photostability: a solution Nat. Methods 2009 6 859 860
40. C. C. Page C. C. Moser X. Chen P. L. Dutton Natural engineering principles of electron tunnelling in biological oxidation-reduction Nature 1999 402 47 52
41. E. Epifanovsky I. Polyakov B. Grigorenko A. Nemukhin A. I. Krylov The effect of oxidation on the electronic structure of the green fluorescent protein chromophore J. Chem. Phys. 2010 132 115104
42. M. Fernandez-Suarez A. Y. Ting Fluorescent probes for super-resolution imaging in living cells Nat. Rev. Mol. Cell Biol. 2008 9 929 943
43. M. Chalfie Green fluorescent protein Photochem. Photobiol. 1995 62 651 656
44. A. Salih A. Larkum G. Cox M. Kuhl Fluorescent pigments in corals are photoprotective Nature 2000 408 850 853 (Pubitemid 32016093)
45. S. F. Field M. Y. Bulina I. V. Kelmanson J. P. Bielawski M. V. Matz Adaptive evolution of multicolored fluorescent proteins in reef-building corals J. Mol. Evol. 2006 62 332 339
46. M. V. Matz N. J. Marshall M. Vorobyev Are corals colorful? Photochem. Photobiol. 2006 82 345 350
47. F. Bou-Abdallah N. D. Chasteen M. P. Lesser Quenching of superoxide radicals by green fluorescent protein Biochim. Biophys. Acta, Gen. Subj. 2006 1760 1690 1695 (Pubitemid 44667263)
48. N. Agmon Proton pathways in green fluorescence protein Biophys. J. 2005 88 2452 2461 (Pubitemid 40976116)
49. J. A. Ugalde B. S. W. Chang M. V. Matz Evolution of coral pigments recreated Science 2004 305 1433 (Pubitemid 39167655)
50. N. O. Alieva K. A. Konzen S. F. Field E. A. Meleshkevitch M. E. Hunt V. Beltran-Ramirez D. J. Miller J. Wiedenmann A. Salih M. V. Matz Diversity and evolution of coral fluorescent proteins PLoS One 2008 3 e2680
51. J. Lin I. A. Balabin D. N. Beratan The nature of aqueous tunneling pathways between electron-transfer proteins Science 2005 310 1311 1313 (Pubitemid 41698859)
52. O. Miyashita M. Y. Okamura J. N. Onuchic Interprotein electron transfer from cytochrome c2 to photosynthetic reaction center: tunneling across an aqueous interface Proc. Natl. Acad. Sci. U. S. A. 2005 102 3558 3563 (Pubitemid 40354651)
53. G. Sainz C. J. Carrell M. V. Ponamarev G. M. Soriano W. A. Cramer J. L. Smith Interruption of the internal water chain of cytochrome f impairs photosynthetic function Biochemistry 2000 39 9164 9173 (Pubitemid 30626310)
54. M. V. Ponamarev W. A. Cramer Perturbation of the internal water chain in cytochrome f of oxygenic photosynthesis: loss of the concerted reduction of cytochromes f and b6 Biochemistry 1998 37 17199 17208 (Pubitemid 29013777)