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Volumn 62, Issue 3, 2006, Pages 332-339

Adaptive evolution of multicolored fluorescent proteins in reef-building corals

Author keywords

Color evolution; Fluorescence; Green fluorescent protein; Positive selection; Symbiosis

Indexed keywords

CRYPTOCHROME; CYAN FLUORESCENT PROTEIN; GREEN FLUORESCENT PROTEIN; PHYTOCHROME; RED FLUORESCENT PROTEIN;

EID: 33644921783     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-005-0129-9     Document Type: Article
Times cited : (94)

References (43)
  • 1
    • 0036789916 scopus 로고    scopus 로고
    • An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein
    • USA
    • Ando R, Hama H, Yamamoto-Hino M, Mizuno H, Miyawaki A (2002) An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein. Proc Natl Acad Sci USA 99:12651-12656
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 12651-12656
    • Ando, R.1    Hama, H.2    Yamamoto-Hino, M.3    Mizuno, H.4    Miyawaki, A.5
  • 2
    • 0036272936 scopus 로고    scopus 로고
    • Accuracy and power of Bayes prediction of amino acid sites under positive selection
    • Anisimova M, Bielawski JP, Yang ZH (2002) Accuracy and power of Bayes prediction of amino acid sites under positive selection. Mol Biol Evol 19:950-958
    • (2002) Mol Biol Evol , vol.19 , pp. 950-958
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.H.3
  • 4
    • 6944240079 scopus 로고    scopus 로고
    • Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment
    • USA
    • Bielawski JP, Dunn KA, Sabehi G, Beja O (2004) Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment. Proc Natl Acad Sci USA 101:14824-14829
    • (2004) Proc Natl Acad Sci , vol.101 , pp. 14824-14829
    • Bielawski, J.P.1    Dunn, K.A.2    Sabehi, G.3    Beja, O.4
  • 5
    • 19944399387 scopus 로고    scopus 로고
    • Applications of ancestral protein reconstruction in understanding protein function: GFP-like proteins
    • Chang BSW, Ugalde JA, Matz MV (2005) Applications of ancestral protein reconstruction in understanding protein function: GFP-like proteins. Methods Enzymol 395:652-670
    • (2005) Methods Enzymol , vol.395 , pp. 652-670
    • Chang, B.S.W.1    Ugalde, J.A.2    Matz, M.V.3
  • 6
    • 0032408156 scopus 로고    scopus 로고
    • Host benefit and the evolution of specialization in symbiosis
    • Douglas AE (1998) Host benefit and the evolution of specialization in symbiosis. Heredity 81:599-603
    • (1998) Heredity , vol.81 , pp. 599-603
    • Douglas, A.E.1
  • 7
    • 0029752542 scopus 로고    scopus 로고
    • Host-symbiont conflict over the mixing of symbiotic lineages
    • Frank SA (1996) Host-symbiont conflict over the mixing of symbiotic lineages. Proc Roy Soc Lond Ser B Biol Sci 263:339-344
    • (1996) Proc Roy Soc Lond Ser B Biol Sci , vol.263 , pp. 339-344
    • Frank, S.A.1
  • 9
    • 0035902836 scopus 로고    scopus 로고
    • Mapping of binding sites for nidogens, fibulin-2, fibronectin and heparin to different IG modules of perlecan
    • Hopf M, Gohring W, Mann K, Timpl R (2001a) Mapping of binding sites for nidogens, fibulin-2, fibronectin and heparin to different IG modules of perlecan. J Mol Biol 311:529-541
    • (2001) J Mol Biol , vol.311 , pp. 529-541
    • Hopf, M.1    Gohring, W.2    Mann, K.3    Timpl, R.4
  • 10
    • 0034952050 scopus 로고    scopus 로고
    • Crystal structure and mutational analysis of a perlecan-binding fragment of nidogen-1
    • Hopf M, Gohring W, Ries A, Timpl R, Hohenester E (2001b) Crystal structure and mutational analysis of a perlecan-binding fragment of nidogen-1. Nature Structural Biol 8:634-640
    • (2001) Nature Structural Biol , vol.8 , pp. 634-640
    • Hopf, M.1    Gohring, W.2    Ries, A.3    Timpl, R.4    Hohenester, E.5
  • 11
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 13
    • 0037424257 scopus 로고    scopus 로고
    • Identification of residues in glutathione transferase capable of driving functional diversification in evolution - A novel approach to protein redesign
    • Ivarsson Y, Mackey AJ, Edalat M, Pearson WR, Mannervik B (2003) Identification of residues in glutathione transferase capable of driving functional diversification in evolution - A novel approach to protein redesign. J Biol Chem 278:8733-8738
    • (2003) J Biol Chem , vol.278 , pp. 8733-8738
    • Ivarsson, Y.1    Mackey, A.J.2    Edalat, M.3    Pearson, W.R.4    Mannervik, B.5
  • 14
    • 0000965065 scopus 로고
    • On the physiology of reef corals. VI. Study of the pigments
    • Kawaguti S (1944) On the physiology of reef corals. VI. Study of the pigments. Palao Trop Biol Stn Stud 2:617-674
    • (1944) Palao Trop Biol Stn Stud , vol.2 , pp. 617-674
    • Kawaguti, S.1
  • 15
    • 0038420019 scopus 로고    scopus 로고
    • Molecular basis and evolutionary origins of color diversity in great star coral Montastraea cavernosa (Scleractinia: Faviida)
    • Kelmanson I, Matz M (2003) Molecular basis and evolutionary origins of color diversity in great star coral Montastraea cavernosa (Scleractinia: Faviida). Mol Biol Evol 20:1125-1133
    • (2003) Mol Biol Evol , vol.20 , pp. 1125-1133
    • Kelmanson, I.1    Matz, M.2
  • 17
    • 12344304652 scopus 로고    scopus 로고
    • Closely related Symbiodinium spp. differ in relative dominance in coral reef host communities across environmental, latitudinal and biogeographic gradients
    • LaJeunesse TC, Bhagooli R, Hidaka M, DeVantier L, Done T, Schmidt GW, Fitt WK, Hoegh-Guldberg O (2004a) Closely related Symbiodinium spp. differ in relative dominance in coral reef host communities across environmental, latitudinal and biogeographic gradients. Mar Ecol Prog Ser 284:147-161
    • (2004) Mar Ecol Prog Ser , vol.284 , pp. 147-161
    • LaJeunesse, T.C.1    Bhagooli, R.2    Hidaka, M.3    DeVantier, L.4    Done, T.5    Schmidt, G.W.6    Fitt, W.K.7    Hoegh-Guldberg, O.8
  • 18
    • 11244352230 scopus 로고    scopus 로고
    • High diversity and host specificity observed among symbiotic dinoflagellates in reef coral communities from Hawaii
    • LaJeunesse TC, Thornhill DJ, Cox EF, Stanton FG, Fitt WK, Schmidt GW (2004b) High diversity and host specificity observed among symbiotic dinoflagellates in reef coral communities from Hawaii. Coral Reefs 23:596-603
    • (2004) Coral Reefs , vol.23 , pp. 596-603
    • LaJeunesse, T.C.1    Thornhill, D.J.2    Cox, E.F.3    Stanton, F.G.4    Fitt, W.K.5    Schmidt, G.W.6
  • 19
    • 0036793311 scopus 로고    scopus 로고
    • Family of the green fluorescent protein: Journey to the end of the rainbow
    • Matz MV, Lukyanov KA, Lukyanov SA (2002) Family of the green fluorescent protein: journey to the end of the rainbow. Bioessays 24:953-959
    • (2002) Bioessays , vol.24 , pp. 953-959
    • Matz, M.V.1    Lukyanov, K.A.2    Lukyanov, S.A.3
  • 21
    • 0242361312 scopus 로고    scopus 로고
    • Photo-induced peptide cleavage in the green-to-red conversion of a fluorescent protein
    • Mizuno H, Mal TK, Tong KI, Ando R, Furuta T, Ikura M, Miyawaki A (2003) Photo-induced peptide cleavage in the green-to-red conversion of a fluorescent protein. Mol Cell 12:1051-1058
    • (2003) Mol Cell , vol.12 , pp. 1051-1058
    • Mizuno, H.1    Mal, T.K.2    Tong, K.I.3    Ando, R.4    Furuta, T.5    Ikura, M.6    Miyawaki, A.7
  • 23
    • 0031847478 scopus 로고    scopus 로고
    • Diversity and ecology of zooxanthellae on coral reefs
    • Rowan R (1998) Diversity and ecology of zooxanthellae on coral reefs. J Phycol 34:407-417
    • (1998) J Phycol , vol.34 , pp. 407-417
    • Rowan, R.1
  • 24
    • 4043176888 scopus 로고    scopus 로고
    • Coral bleaching - Thermal adaptation in reef coral symbionts
    • Rowan R (2004) Coral bleaching - Thermal adaptation in reef coral symbionts. Nature 430:742-742
    • (2004) Nature , vol.430 , pp. 742
    • Rowan, R.1
  • 26
    • 14544281087 scopus 로고    scopus 로고
    • Positive selection of primate TRIM5 alpha identifies a critical species-specific retroviral restriction domain
    • USA
    • Sawyer SL, Wu LI, Emerman M, Malik HS (2005) Positive selection of primate TRIM5 alpha identifies a critical species-specific retroviral restriction domain. Proc Natl Acad Sci USA 102:2832-2837
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 2832-2837
    • Sawyer, S.L.1    Wu, L.I.2    Emerman, M.3    Malik, H.S.4
  • 28
    • 0036855372 scopus 로고    scopus 로고
    • Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites
    • Suzuki Y, Nei M (2002) Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites. Mol Biol Evol 19:1865-1869
    • (2002) Mol Biol Evol , vol.19 , pp. 1865-1869
    • Suzuki, Y.1    Nei, M.2
  • 29
    • 0037230001 scopus 로고    scopus 로고
    • Pervasive adaptive evolution in mammalian fertilization proteins
    • Swanson WJ, Nielsen R, Yang QF (2003) Pervasive adaptive evolution in mammalian fertilization proteins. Mol Biol Evol 20:18-20
    • (2003) Mol Biol Evol , vol.20 , pp. 18-20
    • Swanson, W.J.1    Nielsen, R.2    Yang, Q.F.3
  • 30
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems of the analysis of DNA sequences
    • Tavare L (1986) Some probabilistic and statistical problems of the analysis of DNA sequences. Lect Math Life Sci 17:57-86
    • (1986) Lect Math Life Sci , vol.17 , pp. 57-86
    • Tavare, L.1
  • 31
    • 1942531303 scopus 로고    scopus 로고
    • Resurrecting ancient genes: Experimental analysis of extinct molecules
    • Thornton JW (2004) Resurrecting ancient genes: experimental analysis of extinct molecules. Nature Rev Genet 5:366-375
    • (2004) Nature Rev Genet , vol.5 , pp. 366-375
    • Thornton, J.W.1
  • 32
    • 19244366496 scopus 로고    scopus 로고
    • Evolution of coral pigments recreated
    • Ugalde JA, Chang BSW, Matz MV (2004) Evolution of coral pigments recreated. Science 305:1433
    • (2004) Science , vol.305 , pp. 1433
    • Ugalde, J.A.1    Chang, B.S.W.2    Matz, M.V.3
  • 33
    • 0033674629 scopus 로고    scopus 로고
    • The structural basis for red fluorescence in the tetrameric GFP homologue DsRed
    • Wall MA, Socolich M, Ranganathan R (2000) The structural basis for red fluorescence in the tetrameric GFP homologue DsRed. Nature Struct Biol 7:1133-1138
    • (2000) Nature Struct Biol , vol.7 , pp. 1133-1138
    • Wall, M.A.1    Socolich, M.2    Ranganathan, R.3
  • 35
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13:555-556
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 36
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang ZH (1998) Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol 15:568-573
    • (1998) Mol Biol Evol , vol.15 , pp. 568-573
    • Yang, Z.H.1
  • 37
    • 14744275703 scopus 로고    scopus 로고
    • The power of phylogenetic comparison in revealing protein function
    • USA
    • Yang ZH (2005) The power of phylogenetic comparison in revealing protein function. Proc Natl Acad Sci USA 102:3179-3180
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 3179-3180
    • Yang, Z.H.1
  • 38
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang ZH, Bielawski JP (2000) Statistical methods for detecting molecular adaptation. Trends Ecol Evol 15:496-503
    • (2000) Trends Ecol Evol , vol.15 , pp. 496-503
    • Yang, Z.H.1    Bielawski, J.P.2
  • 39
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • Yang ZH, Nielsen R (2002) Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol Biol Evol 19:908-917
    • (2002) Mol Biol Evol , vol.19 , pp. 908-917
    • Yang, Z.H.1    Nielsen, R.2
  • 40
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang ZH, Nielsen R, Goldman N, Pedersen AMK (2000) Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.H.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.K.4
  • 42
    • 0035895225 scopus 로고    scopus 로고
    • Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution
    • USA
    • Yarbrough D, Wachter RM, Kallio K, Matz MV, Remington SJ (2001) Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution. Proc Natl Acad Sci USA 98:462-467
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 462-467
    • Yarbrough, D.1    Wachter, R.M.2    Kallio, K.3    Matz, M.V.4    Remington, S.J.5
  • 43
    • 0037117541 scopus 로고    scopus 로고
    • Complementary advantageous substitutions in the evolution of an antiviral RNase of higher primates
    • USA
    • Zhang JZ, Rosenberg HF (2002) Complementary advantageous substitutions in the evolution of an antiviral RNase of higher primates. Proc Natl Acad Sci USA 99:5486-5491
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 5486-5491
    • Zhang, J.Z.1    Rosenberg, H.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.