-
1
-
-
0242285765
-
Ribosome assembly in eukaryotes
-
Fromont-Racine, M., Senger, B., Saveanu, C. and Fasiolo, F. (2003) Ribosome assembly in eukaryotes. Gene, 313, 17-42.
-
(2003)
Gene
, vol.313
, pp. 17-42
-
-
Fromont-Racine, M.1
Senger, B.2
Saveanu, C.3
Fasiolo, F.4
-
2
-
-
49249139050
-
The post-transcriptional steps of eukaryotic ribosome biogenesis
-
Henras, A., Soudet, K., Gé rus, J.M., Lebaron, S., Caizergues- Ferrer, M., Mougin, A. and Henry, Y. (2008) The post-transcriptional steps of eukaryotic ribosome biogenesis. Cell. Mol. Life Sci., 65, 2334-2359.
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 2334-2359
-
-
Henras, A.1
Soudet, K.2
Gérus, J.M.3
Lebaron, S.4
Caizergues-Ferrer, M.5
Mougin, A.6
Henry, Y.7
-
3
-
-
0037708880
-
A panoramic view of yeast noncoding RNA processing
-
Peng, W.T., Robinson, M.D., Mnaimneh, S., Krogan, N.J., Cagney, G., Morris, Q., Davierwala, A.P., Grigull, J., Yang, X., Zhang, W. et al. (2003) A panoramic view of yeast noncoding RNA processing. Cell, 113, 919-933.
-
(2003)
Cell
, vol.113
, pp. 919-933
-
-
Peng, W.T.1
Robinson, M.D.2
Mnaimneh, S.3
Krogan, N.J.4
Cagney, G.5
Morris, Q.6
Davierwala, A.P.7
Grigull, J.8
Yang, X.9
Zhang, W.10
-
4
-
-
0033367325
-
Ribosome synthesis in Saccharomyces cerevisiae
-
Venema, J. and Tollervey, D. (1999) Ribosome synthesis in Saccharomyces cerevisiae. Annu. Rev. Genet., 33, 261-311.
-
(1999)
Annu. Rev. Genet.
, vol.33
, pp. 261-311
-
-
Venema, J.1
Tollervey, D.2
-
5
-
-
18544371820
-
90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors
-
Grandi, P., Rybin, V., Bassler, J., Petfalski, E., Strauss, D., Marzioch, M., Schä fer, T., Kuster, B., Tschochner, H., Tollervey, D. et al. (2002) 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol. Cell, 10, 105-115.
-
(2002)
Mol. Cell
, vol.10
, pp. 105-115
-
-
Grandi, P.1
Rybin, V.2
Bassler, J.3
Petfalski, E.4
Strauss, D.5
Marzioch, M.6
Schäfer, T.7
Kuster, B.8
Tschochner, H.9
Tollervey, D.10
-
6
-
-
18644372079
-
60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm
-
Nissan, T.A., Bassler, J., Petfalski, E., Tollervey, D. and Hurt, E. (2002) 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm. EMBO J., 15, 5539-5547.
-
(2002)
EMBO J.
, vol.15
, pp. 5539-5547
-
-
Nissan, T.A.1
Bassler, J.2
Petfalski, E.3
Tollervey, D.4
Hurt, E.5
-
7
-
-
0038738334
-
Pre-ribosomes on the road from the nucleolus to the cytoplasm
-
Tschochner, H. and Hurt, E. (2003) Pre-ribosomes on the road from the nucleolus to the cytoplasm. Trends Cell Biol., 13, 255-263.
-
(2003)
Trends Cell Biol.
, vol.13
, pp. 255-263
-
-
Tschochner, H.1
Hurt, E.2
-
8
-
-
0019877589
-
Multiple ribosomal RNA cleavage pathways in mammalian cells
-
Bowman, L.H., Rabin, B. and Schlessinger, D. (1981) Multiple ribosomal RNA cleavage pathways in mammalian cells. Nucleic Acids Res., 9, 4951-4965.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 4951-4965
-
-
Bowman, L.H.1
Rabin, B.2
Schlessinger, D.3
-
9
-
-
0027466092
-
Alternative pre-rRNA processing pathways in human cells and their alteration by cycloheximide inhibition of protein synthesis
-
Hadjiolova, K.V., Nicoloso, M., Mazan, S., Hadjiolov, A.A. and Bachellerie, J.-P. (1993) Alternative pre-rRNA processing pathways in human cells and their alteration by cycloheximide inhibition of protein synthesis. Eur. J. Biochem., 212, 211-215.
-
(1993)
Eur. J. Biochem.
, vol.212
, pp. 211-215
-
-
Hadjiolova, K.V.1
Nicoloso, M.2
Mazan, S.3
Hadjiolov, A.A.4
Bachellerie, J.-P.5
-
10
-
-
58149094003
-
The 52 external transcribed spacer in mouse ribosomal RNA contains two cleavage sites
-
Kent, T., Lapik, Y.R. and Pestov, D.G. (2009) The 52 external transcribed spacer in mouse ribosomal RNA contains two cleavage sites. RNA, 15, 14-20.
-
(2009)
RNA
, vol.15
, pp. 14-20
-
-
Kent, T.1
Lapik, Y.R.2
Pestov, D.G.3
-
11
-
-
30544439063
-
Nuclear export and cytoplasmic processing of precursors to the 40S ribosomal subunits in mammalian cells
-
Rouquette, J., Choesmel, V. and Gleizes, P.-E. (2005) Nuclear export and cytoplasmic processing of precursors to the 40S ribosomal subunits in mammalian cells. EMBO J., 24, 2862-2872.
-
(2005)
EMBO J.
, vol.24
, pp. 2862-2872
-
-
Rouquette, J.1
Choesmel, V.2
Gleizes, P.-E.3
-
12
-
-
0032915417
-
Regulation of ribosome biogenesis by the rapamycin-sensitive TORsignaling pathway in Saccharomyces cerevisiae
-
Powers, T. and Walter, P. (1999) Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomyces cerevisiae. Mol. Biol. Cell., 10, 987-1000.
-
(1999)
Mol. Biol. Cell.
, vol.10
, pp. 987-1000
-
-
Powers, T.1
Walter, P.2
-
13
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch, A.P., Spellman, P.T., Kao, C.M., Carmel-Harel, O., Eisen, M.B., Storz, G., Botstein, D. and Brown, P.O. (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell., 11, 4241-4257.
-
(2000)
Mol. Biol. Cell.
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
14
-
-
0242637318
-
MTOR-dependent regulation of ribosomal gene transcription requires S6K1 and is mediated by phosphorylation of the carboxy-terminal activation domain of the nucleolar transcription factor UBF
-
Hannan, K.M., Brandenburger, Y., Jenkins, A., Sharkey, K., Cavanaugh, A., Rothblum, L., Moss, T., Poortinga, G., McArthur, G.A., Pearson, R.B. et al. (2003) mTOR-dependent regulation of ribosomal gene transcription requires S6K1 and is mediated by phosphorylation of the carboxy-terminal activation domain of the nucleolar transcription factor UBF. Mol. Cell. Biol., 23, 8862-8877.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 8862-8877
-
-
Hannan, K.M.1
Brandenburger, Y.2
Jenkins, A.3
Sharkey, K.4
Cavanaugh, A.5
Rothblum, L.6
Moss, T.7
Poortinga, G.8
McArthur, G.A.9
Pearson, R.B.10
-
15
-
-
5444256434
-
A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size
-
Jorgensen, P., Rupes, I., Sharom, J.R., Schneper, L., Broach, J.R. and Tyers, M. (2004) A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size. Genes Dev., 18, 2491-2505.
-
(2004)
Genes Dev.
, vol.18
, pp. 2491-2505
-
-
Jorgensen, P.1
Rupes, I.2
Sharom, J.R.3
Schneper, L.4
Broach, J.R.5
Tyers, M.6
-
16
-
-
0344442399
-
A role for c-Myc in the regulation of ribosomal RNA processing
-
Schlosser, I., Hö lzel, M., Mü rnseer, M., Burtscher, H., Weidle, U.H. and Eick, D. (2003) A role for c-Myc in the regulation of ribosomal RNA processing. Nucleic Acids Res., 31, 6148-6156.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6148-6156
-
-
Schlosser, I.1
Hölzel, M.2
Mürnseer, M.3
Burtscher, H.4
Weidle, U.H.5
Eick, D.6
-
17
-
-
20044375377
-
C-Myc associates with ribosomal DNA and activates RNA polymerase i transcription
-
Arabi, A., Wu, S., Ridderstra le, K., Bierhoff, H., Shiue, C., Fatyol, K., Fahlé n, S., Hydbring, P., Sö derberg, O., Grummt, I. et al. (2005) c-Myc associates with ribosomal DNA and activates RNA polymerase I transcription. Nat. Cell. Biol., 7, 303-310.
-
(2005)
Nat. Cell. Biol.
, vol.7
, pp. 303-310
-
-
Arabi, A.1
Wu, S.2
Ridderstra Le, K.3
Bierhoff, H.4
Shiue, C.5
Fatyol, K.6
Fahlén, S.7
Hydbring, P.8
Söderberg, O.9
Grummt, I.10
-
18
-
-
14744284578
-
C-Myc binds to human ribosomal DNA and stimulates transcription of rRNA genes by RNA polymerase i
-
Grandori, C., Gomez-Roman, N., Felton-Edkins, Z.A., Ngouenet, C., Galloway, D.A., Eisenman, R.N. and White, R.J. (2005) c-Myc binds to human ribosomal DNA and stimulates transcription of rRNA genes by RNA polymerase I. Nat. Cell. Biol., 7, 311-318.
-
(2005)
Nat. Cell. Biol.
, vol.7
, pp. 311-318
-
-
Grandori, C.1
Gomez-Roman, N.2
Felton-Edkins, Z.A.3
Ngouenet, C.4
Galloway, D.A.5
Eisenman, R.N.6
White, R.J.7
-
19
-
-
14744297005
-
Myc-dependent regulation of ribosomal RNA synthesis during Drosophila development
-
Grewal, S.S., Li, L., Orian, A., Eisenman, R.N. and Edgar, B.A. (2005) Myc-dependent regulation of ribosomal RNA synthesis during Drosophila development. Nat. Cell. Biol., 7, 295-302.
-
(2005)
Nat. Cell. Biol.
, vol.7
, pp. 295-302
-
-
Grewal, S.S.1
Li, L.2
Orian, A.3
Eisenman, R.N.4
Edgar, B.A.5
-
20
-
-
0037218838
-
Autoregulation in the biosynthesis of ribosomes
-
Zhao, Y., Sohn, J.-H. and Warner, J.R. (2003) Autoregulation in the biosynthesis of ribosomes. Mol. Cell Biol., 23, 699-707.
-
(2003)
Mol. Cell Biol.
, vol.23
, pp. 699-707
-
-
Zhao, Y.1
Sohn, J.-H.2
Warner, J.R.3
-
21
-
-
57749187631
-
Suppression of Myc oncogenic activity by ribosomal protein haploinsufficiency
-
Barna, M., Pusic, A., Zollo, O., Costa, M., Kondrashov, N., Rego, E., Rao, P.H. and Ruggero, D. (2008) Suppression of Myc oncogenic activity by ribosomal protein haploinsufficiency. Nature, 456, 971-975.
-
(2008)
Nature
, vol.456
, pp. 971-975
-
-
Barna, M.1
Pusic, A.2
Zollo, O.3
Costa, M.4
Kondrashov, N.5
Rego, E.6
Rao, P.H.7
Ruggero, D.8
-
22
-
-
54849406775
-
Crosstalk between c-Myc and ribosome in ribosomal biogenesis and cancer
-
Dai, M.S. and Lu, H. (2008) Crosstalk between c-Myc and ribosome in ribosomal biogenesis and cancer. J. Cell. Biochem., 105, 670-677.
-
(2008)
J. Cell. Biochem.
, vol.105
, pp. 670-677
-
-
Dai, M.S.1
Lu, H.2
-
23
-
-
33846873892
-
Impaired ribosome biogenesis in Diamond-Blackfan anemia
-
Choesmel, V., Bacqueville, D., Rouquette, J., Noaillac-Depeyre, J., Fribourg, S., Cré tien, A., Leblanc, T., Tchernia, G., da Costa, L. and Gleizes, P.-E. (2007) Impaired ribosome biogenesis in Diamond-Blackfan anemia. Blood, 109, 1275-1283.
-
(2007)
Blood
, vol.109
, pp. 1275-1283
-
-
Choesmel, V.1
Bacqueville, D.2
Rouquette, J.3
Noaillac-Depeyre, J.4
Fribourg, S.5
Crétien, A.6
Leblanc, T.7
Tchernia, G.8
Da Costa, L.9
Gleizes, P.-E.10
-
24
-
-
34848913619
-
Ribosomal protein S17 gene (RPS17) is mutated in Diamond-Blackfan anemia
-
Cmejla, R., Cmejlova, J., Handrkova, H., Petrak, J. and Pospisilova, D. (2007) Ribosomal protein S17 gene (RPS17) is mutated in Diamond-Blackfan anemia. Hum. Mutat., 28, 1178-1182.
-
(2007)
Hum. Mutat.
, vol.28
, pp. 1178-1182
-
-
Cmejla, R.1
Cmejlova, J.2
Handrkova, H.3
Petrak, J.4
Pospisilova, D.5
-
25
-
-
0032907438
-
The gene encoding ribosomal protein S19 is mutated in Diamond-Blackfan anaemia
-
Draptchinskaia, N., Gustavsson, P., Andersson, B., Pettersson, M., Willig, T.N., Dianzani, I., Ball, S., Tchernia, G., Klar, J., Matsson, H. et al. (1999) The gene encoding ribosomal protein S19 is mutated in Diamond-Blackfan anaemia. Nat. Genet., 21, 169-175.
-
(1999)
Nat. Genet.
, vol.21
, pp. 169-175
-
-
Draptchinskaia, N.1
Gustavsson, P.2
Andersson, B.3
Pettersson, M.4
Willig, T.N.5
Dianzani, I.6
Ball, S.7
Tchernia, G.8
Klar, J.9
Matsson, H.10
-
26
-
-
61649103115
-
Identification of mutations in the ribosomal protein L5 (RPL5) and ribosomal protein L11 (RPL11) genes in Czech patients with Diamond-Blackfan anemia
-
Cmejla, R., Cmejlova, J., Handrkova, H., Petrak, J., Petrtylova, K., Mihal, V., Stary, J., Cerna, Z., Jabali, Y. and Pospisilova, D. (2009) Identification of mutations in the ribosomal protein L5 (RPL5) and ribosomal protein L11 (RPL11) genes in Czech patients with Diamond-Blackfan anemia. Hum. Mutat., 30, 321-327.
-
(2009)
Hum. Mutat.
, vol.30
, pp. 321-327
-
-
Cmejla, R.1
Cmejlova, J.2
Handrkova, H.3
Petrak, J.4
Petrtylova, K.5
Mihal, V.6
Stary, J.7
Cerna, Z.8
Jabali, Y.9
Pospisilova, D.10
-
27
-
-
50649104789
-
Abnormalities of the large ribosomal subunit protein, Rpl35a, in Diamond-Blackfan anemia
-
Farrar, J.E., Nater, M., Caywood, E., McDevitt, M.A., Kowalski, J., Takemoto, C.M., Talbot, C.C. Jr, Meltzer, P., Esposito, D., Beggs, A.H. et al. (2008) Abnormalities of the large ribosomal subunit protein, Rpl35a, in Diamond-Blackfan anemia. Blood, 11, 1582-1592.
-
(2008)
Blood
, vol.11
, pp. 1582-1592
-
-
Farrar, J.E.1
Nater, M.2
Caywood, E.3
McDevitt, M.A.4
Kowalski, J.5
Takemoto, C.M.6
Talbot Jr., C.C.7
Meltzer, P.8
Esposito, D.9
Beggs, A.H.10
-
28
-
-
57649088933
-
Ribosomal protein L5 and L11 mutations are associated with cleft palate and abnormal thumbs in Diamond-Blackfan anemia patients
-
Gazda, H.T., Sheen, M.R., Vlachos, A., Choesmel, V., O'Donohue, M.F., Schneider, H., Darras, N., Hasman, C., Sieff, C.A., Newburger, P.E. et al. (2008) Ribosomal protein L5 and L11 mutations are associated with cleft palate and abnormal thumbs in Diamond-Blackfan anemia patients. Am. J. Hum. Genet., 83, 769-780.
-
(2008)
Am. J. Hum. Genet.
, vol.83
, pp. 769-780
-
-
Gazda, H.T.1
Sheen, M.R.2
Vlachos, A.3
Choesmel, V.4
O'Donohue, M.F.5
Schneider, H.6
Darras, N.7
Hasman, C.8
Sieff, C.A.9
Newburger, P.E.10
-
29
-
-
0031799895
-
X-linked dyskeratosis congenital is caused by mutations in a highly conserved gene with putative nucleolar functions
-
Heiss, N.S., Knight, S.W., Vulliamy, T.J., Klauck, S.M., Wiemann, S., Mason, P.J., Poustka, A. and Dokal, I. (1998) X-linked dyskeratosis congenital is caused by mutations in a highly conserved gene with putative nucleolar functions. Nat. Genet., 19, 32-38.
-
(1998)
Nat. Genet.
, vol.19
, pp. 32-38
-
-
Heiss, N.S.1
Knight, S.W.2
Vulliamy, T.J.3
Klauck, S.M.4
Wiemann, S.5
Mason, P.J.6
Poustka, A.7
Dokal, I.8
-
30
-
-
0037428129
-
Dyskeratosis congenita and cancer in mice deficient in ribosomal RNA modification
-
Ruggero, D., Grisendi, S., Piazza, F., Rego, E., Mari, F., Rao, P.H., Cordon-Card, C. and Pandolfi, P.P. (2003) Dyskeratosis congenita and cancer in mice deficient in ribosomal RNA modification. Science, 299, 259-262.
-
(2003)
Science
, vol.299
, pp. 259-262
-
-
Ruggero, D.1
Grisendi, S.2
Piazza, F.3
Rego, E.4
Mari, F.5
Rao, P.H.6
Cordon-Card, C.7
Pandolfi, P.P.8
-
31
-
-
33646543044
-
Impaired control of IRES-mediated translation in X-linked dyskeratosis congenital
-
Yoon, A., Peng, G., Brandenburger, Y., Zollo, O., Xu, W., Rego, E. and Ruggero, D. (2006) Impaired control of IRES-mediated translation in X-linked dyskeratosis congenital. Science, 312, 902-906.
-
(2006)
Science
, vol.312
, pp. 902-906
-
-
Yoon, A.1
Peng, G.2
Brandenburger, Y.3
Zollo, O.4
Xu, W.5
Rego, E.6
Ruggero, D.7
-
32
-
-
17744393618
-
Mutations in the RNA component of RNase MRP cause a pleiotropic human disease, cartilage-hair hypoplasia
-
Ridanpaa, M., Van Eenennaam, H., Pelin, K., Chadwick, R., Johnson, C., Yuan, B., Van Venrooij, W., Pruijn, G., Salmela, R., Rockas, S. et al. (2001) Mutations in the RNA component of RNase MRP cause a pleiotropic human disease, cartilage-hair hypoplasia. Cell, 104, 195-203.
-
(2001)
Cell
, vol.104
, pp. 195-203
-
-
Ridanpaa, M.1
Van Eenennaam, H.2
Pelin, K.3
Chadwick, R.4
Johnson, C.5
Yuan, B.6
Van Venrooij, W.7
Pruijn, G.8
Salmela, R.9
Rockas, S.10
-
33
-
-
26444526314
-
The Treacher Collins syndrome (TCOF1) gene product is involved in pre-rRNA methylation
-
Gonzales, B., Henning, D., So, R.B., Dixon, J., Dixon, M.J. and Valdez, B.C. (2005) The Treacher Collins syndrome (TCOF1) gene product is involved in pre-rRNA methylation, Hum. Mol. Genet., 14, 2035-2043.
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 2035-2043
-
-
Gonzales, B.1
Henning, D.2
So, R.B.3
Dixon, J.4
Dixon, M.J.5
Valdez, B.C.6
-
34
-
-
3242671307
-
The Treacher Collins syndrome (TCOF1) gene product is involved in ribosomal DNA gene transcription by interacting with upstream binding factor
-
Valdez, B.C., Henning, D., So, R.B., Dixon, J. and Dixon, M.J. (2004) The Treacher Collins syndrome (TCOF1) gene product is involved in ribosomal DNA gene transcription by interacting with upstream binding factor. Proc. Natl Acad. Sci. USA, 101, 10709-10714.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 10709-10714
-
-
Valdez, B.C.1
Henning, D.2
So, R.B.3
Dixon, J.4
Dixon, M.J.5
-
35
-
-
0037229094
-
Mutations in SBDS are associated with Shwachman-Diamond syndrome
-
Boocock, G.R., Morrison, J.A., Popovic, M., Richards, N., Ellis, L., Durie, P.R. and Rommens, J.M. (2003) Mutations in SBDS are associated with Shwachman-Diamond syndrome. Nat. Genet., 33, 97-101.
-
(2003)
Nat. Genet.
, vol.33
, pp. 97-101
-
-
Boocock, G.R.1
Morrison, J.A.2
Popovic, M.3
Richards, N.4
Ellis, L.5
Durie, P.R.6
Rommens, J.M.7
-
36
-
-
34548864371
-
The human Shwachman-Diamond syndrome protein, SBDS, associates with ribosomal RNA
-
Ganapathi, K.A., Austin, K.M., Lee, C.S., Dias, A., Malsch, M.M, Reed, R. and Shimamura, A. (2007) The human Shwachman-Diamond syndrome protein, SBDS, associates with ribosomal RNA. Blood, 110, 1458-1465.
-
(2007)
Blood
, vol.110
, pp. 1458-1465
-
-
Ganapathi, K.A.1
Austin, K.M.2
Lee, C.S.3
Dias, A.4
Malsch, M.M.5
Reed, R.6
Shimamura, A.7
-
37
-
-
66449137253
-
Sdo1p, the yeast ortholog of Shwachman-Bodian-Diamond syndrome protein binds RNA and interacts with nuclear rRNA processing factors
-
Luz, J.S., Georg, R.C., Gomes, C.H., Machado-Santelli, G.M. and Oliveira, C.C. (2009) Sdo1p, the yeast ortholog of Shwachman-Bodian-Diamond syndrome protein binds RNA and interacts with nuclear rRNA processing factors. Yeast, 26, 287-298.
-
(2009)
Yeast
, vol.26
, pp. 287-298
-
-
Luz, J.S.1
Georg, R.C.2
Gomes, C.H.3
MacHado-Santelli, G.M.4
Oliveira, C.C.5
-
38
-
-
34047182008
-
The Shwachman-Bodian-Diamond syndrome protein mediates translational activation of ribosomes in yeast
-
Menne, T.F., Goyenechea, B., Sá nchez-Puig, N., Wong, C.C., Tonkin, L.M., Ancliff, P.J., Brost, R.L., Costanzo, M., Boone, C. and Warren, A.J. (2007) The Shwachman-Bodian-Diamond syndrome protein mediates translational activation of ribosomes in yeast. Nat. Genet., 39, 486-495.
-
(2007)
Nat. Genet.
, vol.39
, pp. 486-495
-
-
Menne, T.F.1
Goyenechea, B.2
Sánchez-Puig, N.3
Wong, C.C.4
Tonkin, L.M.5
Ancliff, P.J.6
Brost, R.L.7
Costanzo, M.8
Boone, C.9
Warren, A.J.10
-
39
-
-
70349684567
-
Dysregulation of ribosome biogenesis and translational capacity is associated with tumor progression of human breast cancer cells
-
Belin, S., Beghin, A., Solano-Gonzà lez, E., Bezin, L., Brunet- Manquat, S., Textoris, J., Prats, A.C., Mertani, H.C., Dumontet, C. and Diaz, J.-J. (2009) Dysregulation of ribosome biogenesis and translational capacity is associated with tumor progression of human breast cancer cells. PLoS ONE, 4, e7147.
-
(2009)
PLoS ONE
, vol.4
-
-
Belin, S.1
Beghin, A.2
Solano-Gonzàlez, E.3
Bezin, L.4
Brunet-Manquat, S.5
Textoris, J.6
Prats, A.C.7
Mertani, H.C.8
Dumontet, C.9
Diaz, J.-J.10
-
40
-
-
0030745619
-
Saccharomyces cerevisiae Nip7p is required for efficient 60S ribosome subunit biogenesis
-
Zanchin, N.I.T., Roberts, P., de Silva, A., Sherman, F. and Goldfarb, D.S. (1997) Saccharomyces cerevisiae Nip7p is required for efficient 60S ribosome subunit biogenesis. Mol. Cell. Biol., 17, 5001-5015.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 5001-5015
-
-
Zanchin, N.I.T.1
Roberts, P.2
De Silva, A.3
Sherman, F.4
Goldfarb, D.S.5
-
41
-
-
0033046425
-
Novel predicted RNA-binding domains associated with the translation machinery
-
Aravind, L. and Koonin, E. (1999) Novel predicted RNA-binding domains associated with the translation machinery. J. Mol. Biol., 48, 291-302.
-
(1999)
J. Mol. Biol.
, vol.48
, pp. 291-302
-
-
Aravind, L.1
Koonin, E.2
-
42
-
-
37049016505
-
Structural insights into the interaction of the Nip7 PUA domain with polyuridine RNA
-
Coltri, P.P., Guimarã es, B.G., Granato, D.C., Luz, J.S., Teixeira, E., Oliveira, C.C. and Zanchin, N.I.T. (2007) Structural insights into the interaction of the Nip7 PUA domain with polyuridine RNA. Biochemistry, 46, 14177-14187.
-
(2007)
Biochemistry
, vol.46
, pp. 14177-14187
-
-
Coltri, P.P.1
Guimarães, B.G.2
Granato, D.C.3
Luz, J.S.4
Teixeira, E.5
Oliveira, C.C.6
Zanchin, N.I.T.7
-
43
-
-
1542319705
-
A novel human nucleolar protein, Nop132, binds to the G proteins, RRAG A/C/D
-
Sekiguchi, T., Todaka, Y., Wang, Y., Hirose, E., Nakashima, N. and Nishimoto, T. (2004) A novel human nucleolar protein, Nop132, binds to the G proteins, RRAG A/C/D. J. Biol. Chem., 279, 8343-8350.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 8343-8350
-
-
Sekiguchi, T.1
Todaka, Y.2
Wang, Y.3
Hirose, E.4
Nakashima, N.5
Nishimoto, T.6
-
44
-
-
0032938118
-
Nip7p interacts with Nop8p an essential nucleolar protein required for 60S ribosome biogenesis, and the exosome subunit Rrp43p
-
Zanchin, N.I.T. and Goldfarb, D.S. (1999) Nip7p interacts with Nop8p, an essential nucleolar protein required for 60S ribosome biogenesis, and the exosome subunit Rrp43p. Mol. Cell. Biol., 19, 1518-1525.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 1518-1525
-
-
Zanchin, N.I.T.1
Goldfarb, D.S.2
-
45
-
-
34147152899
-
Analysis of the ribosomal protein S19 interactome
-
Orrù, S., Aspesi, A., Armiraglio, M., Caterino, M., Loreni, F., Ruoppolo, M., Santoro, C. and Dianzani, I. (2007) Analysis of the ribosomal protein S19 interactome. Mol. Cell. Proteomics, 6, 382-393.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 382-393
-
-
Orrù, S.1
Aspesi, A.2
Armiraglio, M.3
Caterino, M.4
Loreni, F.5
Ruoppolo, M.6
Santoro, C.7
Dianzani, I.8
-
46
-
-
71049184757
-
Parvulin (Par14) a peptidyl-prolyl cis-trans isomerase, is a novel rRNA processing factor that evolved in the metazoan lineage
-
Fujiyama-Nakamura, S., Yoshikawa, H., Homma, K., Hayano, T., Tsujimura-Takahashi, T., Izumikawa, K., Ishikawa, H., Miyazawa, N., Yanagida, M., Miura, Y. et al. (2009) Parvulin (Par14), a peptidyl-prolyl cis-trans isomerase, is a novel rRNA processing factor that evolved in the metazoan lineage. Mol. Cell. Proteomics, 8, 1552-1565.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1552-1565
-
-
Fujiyama-Nakamura, S.1
Yoshikawa, H.2
Homma, K.3
Hayano, T.4
Tsujimura-Takahashi, T.5
Izumikawa, K.6
Ishikawa, H.7
Miyazawa, N.8
Yanagida, M.9
Miura, Y.10
-
47
-
-
36049032791
-
The Shwachman-Bodian-Diamond syndrome associated protein interacts with HsNip7 and its down-regulation affects gene expression at the transcriptional and translational levels
-
Hesling, C., Oliveira, C.C., Castilho, B.A. and Zanchin, N.I.T. (2007) The Shwachman-Bodian-Diamond syndrome associated protein interacts with HsNip7 and its down-regulation affects gene expression at the transcriptional and translational levels. Exp. Cell Res., 313, 4180-4195.
-
(2007)
Exp. Cell Res.
, vol.313
, pp. 4180-4195
-
-
Hesling, C.1
Oliveira, C.C.2
Castilho, B.A.3
Zanchin, N.I.T.4
-
48
-
-
0002440928
-
Molecular cloning
-
2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., Fritsch, E.J. and Maniatis, T. (1989) Molecular cloning, A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. 664.
-
(1989)
A Laboratory Manual
, pp. 664
-
-
Sambrook, J.1
Fritsch, E.J.2
Maniatis, T.3
-
49
-
-
1642307857
-
Transposon based RNAi delivery system for generating knockdown cell lines
-
Heggestad, A.D., Notterpek, L. and Fletcher, B.S. (2004) Transposon based RNAi delivery system for generating knockdown cell lines. Biochem. Biophys. Res. Commun., 316, 643-650.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.316
, pp. 643-650
-
-
Heggestad, A.D.1
Notterpek, L.2
Fletcher, B.S.3
-
50
-
-
0037224884
-
Transient transfection of the human myeloid cell line Mono Mac 6 using electroporation
-
Klan, N. and Steinhilber, D. (2003) Transient transfection of the human myeloid cell line Mono Mac 6 using electroporation. Biotechniques, 34, 142-147.
-
(2003)
Biotechniques
, vol.34
, pp. 142-147
-
-
Klan, N.1
Steinhilber, D.2
-
51
-
-
0031790633
-
Cap-independent polysomal association of natural mRNAs encoding c-myc, BiP, and eIF4G conferred by internal ribosome entry sites
-
Johannes, G. and Sarnow, P. (1998) Cap-independent polysomal association of natural mRNAs encoding c-myc, BiP, and eIF4G conferred by internal ribosome entry sites. RNA, 12, 1500-1513.
-
(1998)
RNA
, vol.12
, pp. 1500-1513
-
-
Johannes, G.1
Sarnow, P.2
-
52
-
-
12544251380
-
Characterization of Saccharomyces cerevisiae Nop17p a novel Nop58p-interacting protein that is involved in pre-rRNA processing
-
Gonzales, F.A., Zanchin, N.I.T., Luz, J.S. and Oliveira, C.C. (2005) Characterization of Saccharomyces cerevisiae Nop17p, a novel Nop58p-interacting protein that is involved in pre-rRNA processing. J. Mol. Biol., 346, 437-455.
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 437-455
-
-
Gonzales, F.A.1
Zanchin, N.I.T.2
Luz, J.S.3
Oliveira, C.C.4
-
53
-
-
57749189164
-
Endonucleolytic RNA cleavage by a eukaryotic exosome
-
Lebreton, A., Tomecki, R., Dziembowski, A. and Sé raphin, B. (2008) Endonucleolytic RNA cleavage by a eukaryotic exosome. Nature, 456, 993-996.
-
(2008)
Nature
, vol.456
, pp. 993-996
-
-
Lebreton, A.1
Tomecki, R.2
Dziembowski, A.3
Séraphin, B.4
-
54
-
-
0020956273
-
Location of the initial cleavage sites in mouse pre-rRNA
-
Bowman, L.H., Goldman, W.E., Goldberg, G.I., Herbert, M.B. and Schiessinger, D. (1983) Location of the initial cleavage sites in mouse pre-rRNA. Mol. Cell. Biol., 3, 1501-1510.
-
(1983)
Mol. Cell. Biol.
, vol.3
, pp. 1501-1510
-
-
Bowman, L.H.1
Goldman, W.E.2
Goldberg, G.I.3
Herbert, M.B.4
Schiessinger, D.5
-
55
-
-
0015948883
-
Three forms of the 5.8S ribosomal RNA species in Saccharomyces cerevisiae
-
Rubin, G.M. (1974) Three forms of the 5.8S ribosomal RNA species in Saccharomyces cerevisiae. Eur. J. Biochem., 41, 197-202.
-
(1974)
Eur. J. Biochem.
, vol.41
, pp. 197-202
-
-
Rubin, G.M.1
-
56
-
-
0021774537
-
Gene heterogeneity: A basis for alternative 5.8S rRNA processing
-
Smith, S.D., Banerjee, N. and Sitz, T.O. (1984) Gene heterogeneity: a basis for alternative 5.8S rRNA processing. Biochemistry, 23, 3648-3652.
-
(1984)
Biochemistry
, vol.23
, pp. 3648-3652
-
-
Smith, S.D.1
Banerjee, N.2
Sitz, T.O.3
-
57
-
-
0027367147
-
Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae
-
Schmitt, M.E. and Clayton, D.A. (1993) Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae. Mol. Cell. Biol., 13, 7935-7941.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 7935-7941
-
-
Schmitt, M.E.1
Clayton, D.A.2
-
58
-
-
50849104525
-
60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes
-
Lebreton, A., Rousselle, J.-C., Lenormand, P., Namane, A., Jacquier, A., Fromont-Racine, M. and Saveanu, C. (2008) 60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes. Nucleic Acids Res., 36, 4988-4999.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4988-4999
-
-
Lebreton, A.1
Rousselle, J.-C.2
Lenormand, P.3
Namane, A.4
Jacquier, A.5
Fromont-Racine, M.6
Saveanu, C.7
-
59
-
-
24644440130
-
Nop53p, an essential nucleolar protein that interacts with Nop17p and Nip7p, is required for pre-rRNA processing in Saccharomyces cerevisiae
-
Granato, D.C., Gonzales, F.A., Luz, J.S., Cassiola, F., Machado- Santelli, G.M. and Oliveira, C.C. (2005) Nop53p, an essential nucleolar protein that interacts with Nop17p and Nip7p, is required for pre-rRNA processing in Saccharomyces cerevisiae. FEBS J., 272, 4450-4463.
-
(2005)
FEBS J.
, vol.272
, pp. 4450-4463
-
-
Granato, D.C.1
Gonzales, F.A.2
Luz, J.S.3
Cassiola, F.4
MacHado-Santelli, G.M.5
Oliveira, C.C.6
-
60
-
-
0033105059
-
The exosome subunit Rrp43p is required for the efficient maturation of 5.8S, 18S and 25S rRNA
-
Zanchin, N.I.T. and Goldfarb, D.S. (1999) The exosome subunit Rrp43p is required for the efficient maturation of 5.8S, 18S and 25S rRNA. Nucleic Acids Res., 27, 1283-1288.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1283-1288
-
-
Zanchin, N.I.T.1
Goldfarb, D.S.2
-
61
-
-
0030702085
-
The exosome: A conserved eukaryotic RNA processing complex containing multiple 30-50 exoribonucleases
-
Mitchell, P., Petfalski, E., Shevchenko, S., Mann, M. and Tollervey, D. (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 30-50 exoribonucleases. Cell, 91, 457-466.
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalski, E.2
Shevchenko, S.3
Mann, M.4
Tollervey, D.5
-
62
-
-
0036799218
-
Temperature-sensitive mutants of the exosome subunit Rrp43p show a deficiency in mRNA degradation and no longer interact with the exosome
-
Oliveira, C.C., Gonzales, F.A. and Zanchin, N.I.T. (2002) Temperature-sensitive mutants of the exosome subunit Rrp43p show a deficiency in mRNA degradation and no longer interact with the exosome. Nucleic Acids Res., 30, 4186-4198.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4186-4198
-
-
Oliveira, C.C.1
Gonzales, F.A.2
Zanchin, N.I.T.3
-
63
-
-
31044454357
-
Rrp5p, a trans-acting factor in yeast ribosome biogenesis, is an RNA-binding protein with a pronounced preference for U-rich sequences
-
De Boer, P., Vos, H.R., Faber, A.W., Vos, J.C. and Raué, H.A. (2006) Rrp5p, a trans-acting factor in yeast ribosome biogenesis, is an RNA-binding protein with a pronounced preference for U-rich sequences. RNA, 12, 263-271.
-
(2006)
RNA
, vol.12
, pp. 263-271
-
-
De Boer, P.1
Vos, H.R.2
Faber, A.W.3
Vos, J.C.4
Raué, H.A.5
-
64
-
-
0033573938
-
Global response of Saccharomyces cerevisiae to an alkylating agent
-
Jelinsky, S.A. and Samson, L.D. (1999) Global response of Saccharomyces cerevisiae to an alkylating agent. Proc. Natl Acad. Sci. USA, 96, 1486-1491.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 1486-1491
-
-
Jelinsky, S.A.1
Samson, L.D.2
-
65
-
-
59649119722
-
Timing of gene expression responses to environmental changes
-
Chechik, G. and Koller, D. (2009) Timing of gene expression responses to environmental changes. J. Comput. Biol., 16, 279-290.
-
(2009)
J. Comput. Biol.
, vol.16
, pp. 279-290
-
-
Chechik, G.1
Koller, D.2
-
66
-
-
54349112123
-
Evolution of the holozoan ribosome biogenesis regulon
-
doi:10.1186/1471-2164-9-442
-
Brown, S.J., Cole, M.D. and Erives, A.J. (2008) Evolution of the holozoan ribosome biogenesis regulon. BMC Genomics, 9, 442, doi:10.1186/1471-2164-9-442.
-
(2008)
BMC Genomics
, vol.9
, pp. 442
-
-
Brown, S.J.1
Cole, M.D.2
Erives, A.J.3
|