Barbarea vulgaris linkage map and quantitative trait loci for saponins, glucosinolates, hairiness and resistance to the herbivore Phyllotreta nemorum

Phytochemistry

Volumn 72, Issue 2-3, 2011, Pages 188-198

  Kuzina, Vera ^a,b   Nielsen, Jens Kvist ^b   Augustin, Jörg Manfred ^a,b   Torp, Anna Maria ^b   Bak, Søren ^a,b   Andersen, Sven Bode ^b  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

Barbarea vulgaris; Brassicaceae; Flea beetles; Genomics; Glucosinolates; Metabolomics; Quantitative trait loci analysis; Saponins

Indexed keywords

GLUCOSINOLATE; SAPONIN;

ANIMAL; ARABIDOPSIS; ARTICLE; BARBAREA; BEETLE; CHEMICAL STRUCTURE; CHEMISTRY; DRUG EFFECT; GENETICS; HIRSUTISM; ISOLATION AND PURIFICATION; LARVA; METABOLISM; PLANT LEAF; QUANTITATIVE TRAIT LOCUS;

ANIMALS; ARABIDOPSIS; BARBAREA; BEETLES; GLUCOSINOLATES; HIRSUTISM; LARVA; MOLECULAR STRUCTURE; PLANT LEAVES; QUANTITATIVE TRAIT LOCI; SAPONINS;

ALTICINI; ARABIDOPSIS; ARABIDOPSIS THALIANA; BARBAREA; BARBAREA VULGARIS; BRASSICACEAE; COLEOPTERA; ORYZA SATIVA; PHYLLOTRETA NEMORUM; SIPHONAPTERA (FLEAS);

EID: 78951472729     PISSN: 00319422     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.phytochem.2010.11.007     Document Type: Article

References (79)

1. I. Abe Enzymatic synthesis of cyclic triterpenes Nat. Prod. Rep. 24 2007 1311 1331
2. N. Agerbirk, C.E. Olsen, and J.K. Nielsen Seasonal variation in leaf glucosinolates and insect resistance in two types of Barbarea vulgaris spp. arcuata Phytochemistry 58 2001 91 100
3. N. Agerbirk, C.E. Olsen, B.M. Bibby, H.O. Frandsen, L.D. Brown, J.K. Nielsen, and J.A.A. Renwick A saponin correlated with variable resistance of Barbarea vulgaris to diamondback moth Plutella xylostella J. Chem. Ecol. 29 2003 1417 1433
4. N. Agerbirk, M. Ørgaard, and J.K. Nielsen Glucosinolates, flea beetle resistance, and leaf pubescence as taxonomic characters in the genus Barbarea (Brassicaceae) Phytochemistry 63 2003 69 80
5. C.D. Bailey, M.A. Koch, M. Mayer, K. Mummenhoff, S.L. O'Kane Jr.; S.I. Warwick, M.D. Windham, and I.A. Al-Shehbaz Toward a global phylogeny of the Brassicaceae Mol. Biol. Evol. 23 2006 2142 2160
6. M.A. Beilstein, I.A. Al-Shehbaz, S. Mathews, and E.A. Kellogg Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: tribes and trichomes revisited Am. J. Bot. 95 2008 1307 1327
7. D. Börjesdotter Potential oil crops. Cultivation of Barbarea verna, Barbarea vulgaris and Lepidium campestre 1999 Acta Universitatis Agriculturae Sueciae Agraria p. 193
8. P. Bowyer, B.R. Clarke, P. Lunness, M.J. Daniels, and A.E. Osbourn Host range of a plant pathogenic fungus determined by a saponin detoxifying enzyme Science 267 1995 371 374
9. C.J. Breuker, K. Victoir, P.W. de Jong, E. van der Meijden, P.M. Brakefield, and K. Vrieling AFLP markers for the R-gene in the flea beetle, Phyllotreta nemorum, conferring resistance to defenses in Barbarea vulgaris J. Insect Sci. 5 2005 38
10. Brown, L.D.; 2001. Optimering af en analysemetode til bestemmelse af flavonoider i Vinterkarse (Barbarea vulgaris). Master Thesis. Department of Basic Sciences and Environment, Faculty of Life Sciences, University of Copenhagen, Denmark.
11. F. Calenge, V. Saliba-Colombani, S. Mahieu, O. Loudet, F. Daniel-Vedele, and A. Krapp Natural variation for carbohydrate content in Arabidopsis. Interaction with complex traits dissected by quantitative genetics Plant Physiol. 141 2006 1630 1643
12. T.L.P. Couvreur, A. Franzke, I.A. Al-Shehbaz, F.T. Bakker, M.A. Koch, and K. Mummenhoff Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae) Mol. Biol. Evol. 27 2010 55 71
13. P.W. de Jong, H.O. Frandsen, L. Rasmussen, and J.K. Nielsen Genetics of resistance against defenses of the host plant Barbarea vulgaris in a Danish flea beetle population Proc. Royal Soc.; London B267 2000 1663 1670
14. J.W. Fahey, A.T. Zalcmann, and P. Talalay The chemical diversity and distribution of glucosinolates and isothiocyanates among plants Phytochemistry 56 2001 5 51
15. A.R. Fernie The future of metabolic phytochemistry: larger numbers of metabolites, higher resolution, greater understanding Phytochemistry 68 2007 2861 2880
16. A.R. Fernie, Y. Tadmor, and D. Zamir Natural genetic variation for improving crop quality Curr. Opin. Plant Biol. 9 2006 196 202
17. B. Field, and A.E. Osbourn Metabolic diversification - independent assembly of operon-like gene clusters in different plants Science 320 2008 543 547
18. H. Fuchs, D. Bachran, H. Panjideh, N. Schellmann, A. Weng, M.F. Melzig, M. Sutherland, and C. Bachran Saponins as tool for improved targeted tumor therapies Curr. Drug Targets 10 2009 140 151
19. D.W. Griffiths, N. Deighton, A.N. Birch, B. Patrian, R. Baur, and E. Städler Identification of glucosinolates on the leaf surface of plants from the Cruciferae and other closely related species Phytochemistry 57 2001 693 700
20. C.S. Haley, and S.A. Knott A simple method for mapping quantitative trait loci in line crosses using flanking markers Heredity 69 1992 315 324
21. B.G. Hansen, R.E. Kerwin, J.A. Ober, V.M. Lambrix, T. Mitchell-Olds, J. Gershenzon, B.A. Halkier, and D.J. Kliebenstein A novel 2-oxoacid-dependent dioxygenase involved in the formation of the goiterogenic 2-hydroxybut-3-enyl glucosinolate and generalist insect resistance in Arabidopsis Plant Physiol. 148 2008 2096 2108
22. K. Haralampidis, M. Trojanowska, and A.E. Osbourn Biosynthesis of triterpenoid saponins in plants Adv. Biochem. Eng. Biotechnol. 75 2002 31 49
23. K. Hostettmann, and A. Marston Saponins J.D. Phillipson, D.C. Ayres, H. Baxter, The chemistry and pharmacology of natural products vol. 4 1995 Cambridge University Press Cambridge 323
24. J.J. Keurentjes, J. Fu, C.H. de Vos, A. Lommen, R.D. Hall, R.J. Bino, L.H. van der Plas, R.C. Jansen, D. Vreugdenhil, and M. Koornneef The genetics of plant metabolism Nat. Genet. 38 2006 842 849
25. D.J. Kliebenstein, J. Gershenzon, and T. Mitchell-Olds Comparative quantitative trait loci mapping of aliphatic, indolic and benzylic glucosinolate production in Arabidopsis thaliana leaves and seeds Genetics 159 2001 359 370
26. D. Kliebenstein, D. Pedersen, B. Barker, and T. Mitchell-Olds Comparative analysis of quantitative trait loci controlling glucosinolates, myrosinase and insect resistance in Arabidopsis thaliana Genetics 161 2002 325 332
27. M.A. Koch, and M. Kiefer Genome evolution among cruciferous plants: a lecture from the comparison of the genetic maps of three diploid species - Capsella rubella, Arabidopsis lyrata ssp. petraea, and A. thaliana Am. J. Bot. 92 2005 761 767
28. V. Kuzina, C.T. Ekstrøm, S.B. Andersen, J.K. Nielsen, C.E. Olsen, and S. Bak Identification of defense compounds in Barbarea vulgaris against the herbivore Phyllotreta nemorum by an ecometabolomic approach Plant Physiol. 151 2009 1977 1990
29. E.S. Lander, and D. Botstein Mappinig mendelian factors underlying quantitative traits using RFLP linkage maps Genetics 121 1989 185 199
30. M.J. Lawson, and L. Zhang Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes Genome Biol. 7 2006 R14
31. J. Lisec, M. Steinfath, R.C. Meyer, J. Selbig, A.E. Melchinger, L. Willmitzer, and T. Altmann Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations Plant J. 59 2009 777 788
32. S. Lodeiro, Q. Xiong, W.K. Wilson, M.D. Kolesnikova, C.S. Onak, and S.P.T. Matsuda An oxidosqualene cyclase makes numerous products by diverse mechanisms: a challenge to prevailing concepts of triterpene biosynthesis J. Am. Chem. Soc. 129 2007 11213 11222
33. M.A. Lysak, A. Berr, A. Pecinka, R. Schmidt, K. McBreen, and I. Schubert Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species Proc. Natl. Acad. Sci. USA 103 2006 5224 5229
34. M.A. MacDonald, and P.B. Cavers The biology of Canadian weeds. 97. Barbarea vulgaris R Br. Can. J. Plant Sci. 71 1991 149 166
35. S. Mathieu, V.D. Cin, Z. Fei, H. Li, P. Bliss, M.G. Taylor, H.J. Klee, and D.M. Tieman Flavour compounds in tomato fruits: identification of loci and potential pathways affecting volatile composition J. Exp. Bot. 60 2009 325 337
36. McCullagh, P.; Nelder, J.A.; 1989. Generalized Linear Models, second ed. Chapman & Hall/CRC Monographs on Statistics and Applied Probability. ISBN 9780412317606.
37. D. Mester, Y. Ronin, D. Minkov, E. Nevo, and A. Korol Constructing large-scale genetic maps using an evolutionary strategy algorithm Genetics 165 2003 2269 2282
38. A.V. Morant, K. Jørgensen, C. Jørgensen, S.M. Paquette, R. Sanchez-Perez, B.L. Møller, and S. Bak β-Glucosidases as detonators of plant chemical defense Phytochemistry 69 2008 1795 1813
39. J.P. Morrissey, J.P. Wubben, and A.E. Osbourn Stagonospora avenae secretes multiple enzymes that hydrolyze oat leaf saponins Mol. Plant-Microbe Interact. 13 2000 1041 1052
40. M.A. Naoumkina, L.V. Modolo, D.V. Huhman, E. Urbanczyk-Wochniak, Y. Tang, L.W. Sumner, and R.A. Dixon Genomic and coexpression analyses predict multiple genes involved in triterpene saponin biosynthesis in Medicago truncatula Plant Cell 22 2010 850 866
41. J.K. Nielsen Genetics of the ability of Phyllotreta nemorum to survive in an atypical host plant Barbarea vulgaris ssp. arcuata Entomol. Exp. Appl. 82 1997 37 44
42. J.K. Nielsen Specificity of a Y-linked gene in the flea beetle Phyllotreta nemorum for defences in Barbarea vulgaris Entomol. Exp. Appl. 91 1999 359 368
43. J.K. Nielsen, and P.W. de Jong Temporal and host-related variation in frequencies of genes that enable Phyllotreta nemorum to utilize a novel host plant, Barbarea vulgaris Entomol. Exp. Appl. 115 2005 265 270
44. J.K. Nielsen, M. Larsen, and H. Sørensen Host plant selection of the horseradish flea beetle Phyllotreta armoraciae (Coleoptera: Chrysomelidae). Identification of two flavonol glycosides stimulating feeding in combination with glucosinolates Entomol. Exp. Appl. 26 1979 40 48
45. J.K. Nielsen, T. Nagao, H. Okabe, and T. Shinoda Resistance in the plant, Barbarea vulgaris, and counter-adaptations in flea beetles mediated by saponins J. Chem. Ecol. 36 2010 277 285
46. N.J. Nielsen, J. Nelsen, and D. Staerk New resistance-correlated saponins from the insect-resistant crucifer Barbarea vulgaris J. Agric. Food Chem. 58 2010 5509 5514
47. K. Ohyama, M. Suzuki, J. Kikuchi, K. Saito, and T. Muranaka Dual biosynthetic pathways to phytosterol via cycloartenol and lanosterol in Arabidopsis Proc. Natl. Acad. Sci. USA 106 2009 725 730
48. M. Ørgaard, and I. Linde-Laursen Meiotic analysis of Danish species of Barbarea (Brassicaceae) using FISH: chromosome numbers and rDNA sites Hereditas 145 2008 215 219
49. A.E. Osbourn Saponins and plant defense - a soap story Trends Plant Sci. 1 1996 4 9
50. Paquette, S.M.; Jensen, K.; Bak, S.; 2009. A web-based resource for the Arabidopsis P450, cytochromes 5, NADPH-cytochrome P450 reductases, and family 1glycosyltransferases. Phytochemistry 70, 1940-1947. .
51. M. Pfalz, H. Vogel, T. Mitchell-Olds, and J. Kroymann Mapping of QTL for resistance against the crucifer specialist herbivore Pieris brassicae in a new Arabidopsis inbred line population, Da(1)-12 × Ei-2 PLoS One 2 2007 e578
52. M. Pfalz, H. Vogel, and J. Kroymann The gene controlling the indole glucosinolate modifier1 quantitative trait locus alters indole glucosinolate structures and aphid resistance in Arabidopsis Plant Cell 21 2009 985 999
53. D.R. Phillips, J.M. Rasbery, B. Bartel, and S.P.T. Matsuda Biosynthetic diversity in plant triterpene cyclization Curr. Opin. Plant Biol. 9 2006 305 314
54. X. Qi, S. Bakht, M. Leggett, C. Maxwell, R. Melton, and A. Osbourn A gene cluster for secondary metabolism in oat: implications for the evolution of metabolic diversity in plants Proc. Natl. Acad. Sci. USA 101 2004 8233 8238
55. J.A.A. Renwick The chemical world of crucivores: lures, treats and traps Entomol. Exp. Appl. 104 2002 35 42
56. M.A. Saghai-Maroof, K.M. Soliman, R.A. Jorgensen, and R.W. Allard Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics Proc. Natl. Acad. Sci. USA 81 1984 8014 8018
57. N. Schauer, Y. Semel, U. Roessner, A. Gur, I. Balbo, F. Carrari, T. Pleban, A. Perez-Melis, C. Breudigam, J. Kopka, L. Willmitzer, D. Zamir, and A.R. Fernie Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement Nat. Biotechnol. 24 2006 447 454
58. M.E. Schranz, A.J. Manzaneda, A.J. Windsor, M.J. Clauss, and T. Mitchell-Olds Ecological genomics of Boechera stricta: identification of a QTL controlling the allocation of methionine- vs branched-chain amino acid-derived glucosinolates and levels of insect herbivory Heredity 102 2009 465 474
59. M. Schuelke An economic method for the fluorescent labeling of PCR fragments. A poor man's approach to genotyping for research and high-throughput diagnostics Nat. Biotechnol. 18 2000 233 234
60. F. Senatore, M. D'Agostino, and I. Dini Flavonoid glycosides of Barbarea vulgaris L. (Brassicaceae) J. Agric. Food Chem. 48 2000 2659 2662
61. M. Shibuya, Y. Katsube, M. Otsuka, H. Zhang, P. Tansakul, T. Xiang, and Y. Ebizuka Identification of a product specific beta-amyrin synthase from Arabidopsis thaliana Plant Physiol. Biochem. 47 2009 26 30
62. T. Shinoda, T. Nagao, M. Nakayama, H. Serizawa, M. Koshioka, H. Okabe, and A. Kawai Identification of a triterpenoid saponin from a crucifer, Barbarea vulgaris, as a feeding deterrent to the diamond back moth, Plutella xylostella J. Chem. Ecol. 28 2002 587 599
63. S.G. Sparg, M.E. Light, and J. van Staden Biological activities and distribution of plant saponins J. Ethnopharmacol. 94 2004 219 243
64. M. Stift, P. Kuperus, and P.H. van Tienderen Development of highly conserved primers for 12 new polymorphic microsatellite loci for the genus Rorippa Scop. (Brassicaceae), yellow-cress Mol. Ecol. Notes 6 2006 1129 1131
65. N. Sultana, and A. Ata Oleanolic acid and related derivatives as medicinally important compounds J. Enzyme Inhib. Med. Chem. 23 2008 736 756
66. H.X. Sun, Y. Xie, and Y.P. Ye Advances in saponin-based adjuvants Vaccine 27 2009 1787 1796
67. A. Tava, M. Mella, P. Avato, E. Biazzi, L. Pecetti, Z. Bialy, and M. Jurzysta New triterpenic saponins from the aerial parts of Medicago arabica (L.) huds J. Agric. Food Chem. 57 2009 2826 2835
68. F. Toneatto, J.K. Nielsen, M. Ørgaard, and T.P. Hauser Genetic and sexual separation between insect resistant and susceptible Barbarea vulgaris plants in Denmark Mol. Ecol. 19 2010 3456 3465
69. van Leur, H.; 2008. Genetics, Chemistry and Ecology of a Qualitative Glucosinolate Polymorphism in Barbarea vulgaris. Ph.D. Thesis. Wageningen University, Wageningen, The Netherlands.
70. H. van Leur, C.E. Raaijmakers, and N.M. van Dam A heritable glucosinolate polymorphism within natural populations of Barbarea vulgaris Phytochemistry 67 2006 1214 1223
71. J.W. van Ooijen, and R.E. Voorrips JoinMap® Version 3.0: Software for the Calculation of Genetic Linkage Maps 2001 Plant Research International Wageningen, The Netherlands
72. J.P. Vincken, L. Heng, A. de Groot, and H. Gruppen Saponins, classification and occurrence in the plant kingdom Phytochemistry 68 2007 275 297
73. P. Vos, R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau AFLP: a new technique for DNA fingerprinting Nucleic Acids Res. 23 1995 4407 4414
74. S.M. Ward A recessive allele inhibiting saponin synthesis in two lines of Bolivian quinoa (Chenopodium quinoa Willd) J. Heredity 92 2001 83 86
75. A.J. Windsor, M. Reichelt, A. Figuth, A. Svatos, J. Kroymann, D.J. Kliebenstein, J. Gershenzon, and T. Mitchell-Olds Geographic and evolutionary diversification of glucosinolates among near relatives of Arabidopsis thaliana (Brassicaceae) Phytochemistry 66 2005 1321 1333
76. A.C. Yendo, F. de Costa, G. Gosmann, and A.G. Fett-Neto Production of plant bioactive triterpenoid saponins: elicitation strategies and target genes to improve yields Mol. Biotechnol. 46 2010 94 104
77. M.I. Zanor, J.L. Rambla, J. Chaïb, A. Steppa, A. Medina, A. Granell, A.R. Fernie, and M. Causse Metabolic characterization of loci affecting sensory attributes in tomato allows an assessment of the influence of the levels of primary metabolites and volatile organic contents J. Exp. Bot. 60 2009 2139 2154
78. Z. Zhang, J.A. Ober, and D.J. Kliebenstein The gene controlling the quantitative trait locus EPITHIOSPECIFIER MODIFIER1 alters glucosinolate hydrolysis and insect resistance in Arabidopsis Plant Cell 18 2006 1524 1536
79. C.L. Zhao, X.M. Cui, Y.P. Chen, and Q. Liang Key enzymes of triterpenoid saponin biosynthesis and the induction of their activities and gene expressions in plants Nat. Prod. Commun. 5 2010 1147 1158