메뉴 건너뛰기




Volumn 17, Issue 2, 2011, Pages 244-250

Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide

Author keywords

Pseudouridylase; Ribosome biogenesis; RNA protein interactions; X ray crystal structure

Indexed keywords

ACA TRINUCLEOTIDE; DYSKERIN; RIBOSOME RNA; SHORT HAIRPIN RNA; SMALL NUCLEAR RIBONUCLEOPROTEIN; TRANSFER RNA; TRINUCLEOTIDE; UNCLASSIFIED DRUG; URIDINE;

EID: 78751555754     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2415811     Document Type: Article
Times cited : (14)

References (46)
  • 3
    • 0030572699 scopus 로고    scopus 로고
    • The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions
    • DOI 10.1016/S0092-8674(00)80156-7
    • Balakin AG, Smith L, Fournier MJ. 1996. The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions. Cell 86: 823-834. (Pubitemid 26303450)
    • (1996) Cell , vol.86 , Issue.5 , pp. 823-834
    • Balakin, A.G.1    Smith, L.2    Fournier, M.J.3
  • 4
    • 0030837031 scopus 로고    scopus 로고
    • A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs
    • DOI 10.1093/emboj/16.15.4770
    • Bousquet-Antonelli C, Henry Y, G'Elugne JP, Caizergues-Ferrer M, Kiss T. 1997. A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs. EMBO J 16: 4770-4776. (Pubitemid 27326614)
    • (1997) EMBO Journal , vol.16 , Issue.15 , pp. 4770-4776
    • Bousquet-Antonelli, C.1    Henry, Y.2    Gelugne, J.-P.3    Caizergues-Ferrer, M.4    Kiss, T.5
  • 5
    • 20144374350 scopus 로고    scopus 로고
    • Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation
    • DOI 10.1093/nar/gki630
    • Charpentier B, Muller S, Branlant C. 2005. Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation. Nucleic Acids Res 33: 3133-3144. (Pubitemid 41194457)
    • (2005) Nucleic Acids Research , vol.33 , Issue.10 , pp. 3133-3144
    • Charpentier, B.1    Muller, S.2    Branlant, C.3
  • 6
    • 0034598919 scopus 로고    scopus 로고
    • Secondary structure of vertebrate telomerase RNA
    • Chen JL, Blasco MA, Greider CW. 2000. Secondary structure of vertebrate telomerase RNA. Cell 100: 503-514.
    • (2000) Cell , vol.100 , pp. 503-514
    • Chen, J.L.1    Blasco, M.A.2    Greider, C.W.3
  • 8
    • 0343183144 scopus 로고    scopus 로고
    • In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs
    • Dragon F, Pogacic V, Filipowicz W. 2000. In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs. Mol Cell Biol 20: 3037-3048.
    • (2000) Mol Cell Biol , vol.20 , pp. 3037-3048
    • Dragon, F.1    Pogacic, V.2    Filipowicz, W.3
  • 9
    • 65649140052 scopus 로고    scopus 로고
    • Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase
    • Duan J, Li L, Lu J, Wang W, Ye K. 2009. Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase. Mol Cell 34: 427-439.
    • (2009) Mol Cell , vol.34 , pp. 427-439
    • Duan, J.1    Li, L.2    Lu, J.3    Wang, W.4    Ye, K.5
  • 10
  • 11
    • 0038392866 scopus 로고    scopus 로고
    • Distinct biogenesis pathways for human telomerase RNA and H/ACA small nucleolar RNAs
    • DOI 10.1016/S1097-2765(03)00196-5
    • Fu D, Collins K. 2003. Distinct biogenesis pathways for human telomerase RNA and H/ACA small nucleolar RNAs. Mol Cell 11: 1361-1372. (Pubitemid 36645153)
    • (2003) Molecular Cell , vol.11 , Issue.5 , pp. 1361-1372
    • Fu, D.1    Collins, K.2
  • 12
    • 0030711050 scopus 로고    scopus 로고
    • Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
    • Ganot P, Bortolin ML, Kiss T. 1997. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89: 799-809. (Pubitemid 27516183)
    • (1997) Cell , vol.89 , Issue.5 , pp. 799-809
    • Ganot, P.1    Bortolin, M.-L.2    Kiss, T.3
  • 14
    • 33749357492 scopus 로고    scopus 로고
    • Mechanistic investigations of the pseudouridine synthase RluA using RNA containing 5-fluorouridine
    • Hamilton CS, Greco TM, Vizthum CA, Ginter JM, Johnston MV, Mueller EG. 2006. Mechanistic investigations of the pseudouridine synthase RluA using RNA containing 5-fluorouridine. Biochemistry 45: 12029-12038.
    • (2006) Biochemistry , vol.45 , pp. 12029-12038
    • Hamilton, C.S.1    Greco, T.M.2    Vizthum, C.A.3    Ginter, J.M.4    Johnston, M.V.5    Mueller, E.G.6
  • 16
    • 0035966271 scopus 로고    scopus 로고
    • Cocrystal structure of a tRNA Psi55 pseudouridine synthase: Nucleotide flipping by an RNA-modifying enzyme
    • Hoang C, Ferre-D'Amare AR. 2001. Cocrystal structure of a tRNA Psi55 pseudouridine synthase: Nucleotide flipping by an RNA-modifying enzyme. Cell 107: 929-939.
    • (2001) Cell , vol.107 , pp. 929-939
    • Hoang, C.1    Ferre-D'Amare, A.R.2
  • 17
    • 33751013845 scopus 로고    scopus 로고
    • Crystal structure of pseudouridine synthase RluA: Indirect sequence readout through protein-induced RNA structure
    • Hoang C, Chen J, Vizthum CA, Kandel JM, Hamilton CS, Mueller EG, Ferre-D'Amare AR. 2006. Crystal structure of pseudouridine synthase RluA: Indirect sequence readout through protein-induced RNA structure. Mol Cell 24: 535-545.
    • (2006) Mol Cell , vol.24 , pp. 535-545
    • Hoang, C.1    Chen, J.2    Vizthum, C.A.3    Kandel, J.M.4    Hamilton, C.S.5    Mueller, E.G.6    Ferre-D'Amare, A.R.7
  • 18
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones TA, Zou JY, Cowan SW, Kjeldgaard M. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47: 110-119.
    • (1991) Acta Crystallogr A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 19
    • 0034700156 scopus 로고    scopus 로고
    • A CBF5 mutation that disrupts nucleolar localization of early tRNA biosynthesis in yeast also suppresses tRNA gene-mediated transcriptional silencing
    • Kendall A, Hull MW, Bertrand E, Good PD, Singer RH, Engelke DR. 2000. A CBF5 mutation that disrupts nucleolar localization of early tRNA biosynthesis in yeast also suppresses tRNA gene-mediated transcriptional silencing. Proc Natl Acad Sci 97: 13108-13113.
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 13108-13113
    • Kendall, A.1    Hull, M.W.2    Bertrand, E.3    Good, P.D.4    Singer, R.H.5    Engelke, D.R.6
  • 20
    • 0037133942 scopus 로고    scopus 로고
    • Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
    • Kiss T. 2002. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell 109: 145-148.
    • (2002) Cell , vol.109 , pp. 145-148
    • Kiss, T.1
  • 22
  • 23
    • 33748947672 scopus 로고    scopus 로고
    • Crystal structure of an H/ACA box ribonucleoprotein particle
    • DOI 10.1038/nature05151, PII NATURE05151
    • Li L, Ye K. 2006. Crystal structure of an H/ACA box ribonucleoprotein particle. Nature 443: 302-307. (Pubitemid 44435144)
    • (2006) Nature , vol.443 , Issue.7109 , pp. 302-307
    • Li, L.1    Ye, K.2
  • 24
    • 36849034965 scopus 로고    scopus 로고
    • Substrate RNA positioning in the archaeal H/ACA ribonucleoprotein complex
    • DOI 10.1038/nsmb1336, PII NSMB1336
    • Liang B, Xue S, Terns RM, Terns MP, Li H. 2007. Substrate RNA positioning in the archaeal H/ACA ribonucleoprotein complex. Nat Struct Mol Biol. 14: 1189-1195. (Pubitemid 350223336)
    • (2007) Nature Structural and Molecular Biology , vol.14 , Issue.12 , pp. 1189-1195
    • Liang, B.1    Xue, S.2    Terns, R.M.3    Terns, M.P.4    Li, H.5
  • 25
    • 52949118507 scopus 로고    scopus 로고
    • Long-distance placement of substrate RNA by H/ACA proteins
    • Liang B, Kahen EJ, Calvin K, Zhou J, Blanco M, Li H. 2008. Long-distance placement of substrate RNA by H/ACA proteins. RNA 14: 2086-2094.
    • (2008) RNA , vol.14 , pp. 2086-2094
    • Liang, B.1    Kahen, E.J.2    Calvin, K.3    Zhou, J.4    Blanco, M.5    Li, H.6
  • 26
    • 67650340746 scopus 로고    scopus 로고
    • Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA
    • Liang B, Zhou J, Kahen E, Terns RM, Terns MP, Li H. 2009. Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA. Nat Struct Mol Biol 16: 740-746.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 740-746
    • Liang, B.1    Zhou, J.2    Kahen, E.3    Terns, R.M.4    Terns, M.P.5    Li, H.6
  • 27
    • 33644867181 scopus 로고    scopus 로고
    • Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity
    • Manival X, Charron C, Fourmann JB, Godard F, Charpentier B, Branlant C. 2006. Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity. Nucleic Acids Res 34: 826-839.
    • (2006) Nucleic Acids Res , vol.34 , pp. 826-839
    • Manival, X.1    Charron, C.2    Fourmann, J.B.3    Godard, F.4    Charpentier, B.5    Branlant, C.6
  • 29
    • 0033636897 scopus 로고    scopus 로고
    • Human telomerase activation requires two independent interactions between telomerase RNA and telomerase reverse transcriptase
    • Mitchell JR, Collins K. 2000. Human telomerase activation requires two independent interactions between telomerase RNA and telomerase reverse transcriptase. Mol Cell 6: 361-371.
    • (2000) Mol Cell , vol.6 , pp. 361-371
    • Mitchell, J.R.1    Collins, K.2
  • 30
    • 0032961170 scopus 로고    scopus 로고
    • A box H/ACA small nucleolar RNA-like domain at the human telomerase RNA 3' end
    • Mitchell JR, Cheng J, Collins K. 1999. A box H/ACA small nucleolar RNA-like domain at the human telomerase RNA 3′ end. Mol Cell Biol 19: 567-576. (Pubitemid 29018458)
    • (1999) Molecular and Cellular Biology , vol.19 , Issue.1 , pp. 567-576
    • Mitchell, J.R.1    Cheng, J.2    Collins, K.3
  • 31
    • 34548707914 scopus 로고    scopus 로고
    • Identification of determinants in the protein partners aCBF5 and aNOP10 necessary for the tRNA: Psi55-synthase and RNA-guided RNA:Psi-synthase activities
    • DOI 10.1093/nar/gkm606
    • Muller S, Fourmann JB, Loegler C, Charpentier B, Branlant C. 2007. Identification of determinants in the protein partners aCBF5 and aNOP10 necessary for the tRNA:Psi55-synthase and RNA-guided RNA:Psi-synthase activities. Nucleic Acids Res 35: 5610-5624. (Pubitemid 47423931)
    • (2007) Nucleic Acids Research , vol.35 , Issue.16 , pp. 5610-5624
    • Muller, S.1    Fourmann, J.-B.2    Loegler, C.3    Charpentier, B.4    Branlant, C.5
  • 32
    • 43349108346 scopus 로고    scopus 로고
    • Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs
    • DOI 10.1093/nar/gkn077
    • Muller S, Leclerc F, Behm-Ansmant I, Fourmann JB, Charpentier B, Branlant C. 2008. Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs. Nucleic Acids Res 36: 2459-2475. (Pubitemid 351659563)
    • (2008) Nucleic Acids Research , vol.36 , Issue.8 , pp. 2459-2475
    • Muller, S.1    Leclerc, F.2    Behm-Ansmant, I.3    Fourmann, J.-B.4    Charpentier, B.5    Branlant, C.6
  • 33
    • 0030771087 scopus 로고    scopus 로고
    • Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA
    • Ni J, Tien AL, Fournier MJ. 1997. Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Cell 89: 565-573. (Pubitemid 27511767)
    • (1997) Cell , vol.89 , Issue.4 , pp. 565-573
    • Ni, J.1    Tien, A.L.2    Fournier, M.J.3
  • 34
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • DOI 10.1016/S0076-6879(97)76066-X
    • Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276: 307-326. (Pubitemid 27085611)
    • (1997) Methods in Enzymology , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 35
    • 0242331664 scopus 로고    scopus 로고
    • Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit
    • Pan H, Agarwalla S, Moustakas DT, Finer-Moore J, Stroud RM. 2003. Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit. Proc Natl Acad Sci 100: 12648-12653.
    • (2003) Proc Natl Acad Sci , vol.100 , pp. 12648-12653
    • Pan, H.1    Agarwalla, S.2    Moustakas, D.T.3    Finer-Moore, J.4    Stroud, R.M.5
  • 36
    • 2542578632 scopus 로고    scopus 로고
    • Conformational change of pseudouridine 55 synthase upon its association with RNA substrate
    • DOI 10.1093/nar/gkh287
    • Phannachet K, Huang RH. 2004. Conformational change of pseudouridine 55 synthase upon its association with RNA substrate. Nucleic Acids Res 32: 1422-1429. (Pubitemid 38854743)
    • (2004) Nucleic Acids Research , vol.32 , Issue.4 , pp. 1422-1429
    • Phannachet, K.1    Huang, R.H.2
  • 37
    • 28244473650 scopus 로고    scopus 로고
    • Dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase
    • Phannachet K, Elias Y, Huang RH. 2005. Dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase. Biochemistry 44: 15488-15494.
    • (2005) Biochemistry , vol.44 , pp. 15488-15494
    • Phannachet, K.1    Elias, Y.2    Huang, R.H.3
  • 38
    • 30744445688 scopus 로고    scopus 로고
    • Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita
    • Rashid R, Liang B, Baker DL, Youssef OA, He Y, Phipps K, Terns RM, Terns MP, Li H. 2006. Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita. Mol Cell 21: 249-260.
    • (2006) Mol Cell , vol.21 , pp. 249-260
    • Rashid, R.1    Liang, B.2    Baker, D.L.3    Youssef, O.A.4    He, Y.5    Phipps, K.6    Terns, R.M.7    Terns, M.P.8    Li, H.9
  • 40
    • 0037324527 scopus 로고    scopus 로고
    • Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea
    • Rozhdestvensky TS, Tang TH, Tchirkova IV, Brosius J, Bachellerie JP, Huttenhofer A. 2003. Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res 31: 869-877.
    • (2003) Nucleic Acids Res , vol.31 , pp. 869-877
    • Rozhdestvensky, T.S.1    Tang, T.H.2    Tchirkova, I.V.3    Brosius, J.4    Bachellerie, J.P.5    Huttenhofer, A.6
  • 41
    • 3042523704 scopus 로고    scopus 로고
    • Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis
    • Russell AG, Schnare MN, Gray MW. 2004. Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis. RNA 10: 1034-1046.
    • (2004) RNA , vol.10 , pp. 1034-1046
    • Russell, A.G.1    Schnare, M.N.2    Gray, M.W.3
  • 42
    • 1642580816 scopus 로고    scopus 로고
    • Not all pseudouridine synthases are potently inhibited by RNA containing 5-fluorouridine
    • Spedaliere CJ, Mueller EG. 2004. Not all pseudouridine synthases are potently inhibited by RNA containing 5-fluorouridine. RNA 10: 192-199.
    • (2004) RNA , vol.10 , pp. 192-199
    • Spedaliere, C.J.1    Mueller, E.G.2
  • 44
    • 0035960043 scopus 로고    scopus 로고
    • The RNA component of telomerase is mutated in autosomal dominant dyskeratosis congenita
    • DOI 10.1038/35096585
    • Vulliamy T, Marrone A, Goldman F, Dearlove A, Bessler M, Mason PJ, Dokal I. 2001. The RNA component of telomerase is mutated in autosomal dominant dyskeratosis congenita. Nature 413: 432-435. (Pubitemid 32928599)
    • (2001) Nature , vol.413 , Issue.6854 , pp. 432-435
    • Vulliamy, T.1    Marrone, A.2    Goldman, F.3    Dearlove, A.4    Bessler, M.5    Mason, P.J.6    Dokal, I.7
  • 45
    • 0034659940 scopus 로고    scopus 로고
    • Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: Cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria
    • Watanabe Y, Gray MW. 2000. Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria. Nucleic Acids Res 28: 2342-2352.
    • (2000) Nucleic Acids Res , vol.28 , pp. 2342-2352
    • Watanabe, Y.1    Gray, M.W.2
  • 46
    • 0031788801 scopus 로고    scopus 로고
    • Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure
    • Watkins NJ, Gottschalk A, Neubauer G, Kastner B, Fabrizio P, Mann M, Luhrmann R. 1998. Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure. RNA 4: 1549-1568.
    • (1998) RNA , vol.4 , pp. 1549-1568
    • Watkins, N.J.1    Gottschalk, A.2    Neubauer, G.3    Kastner, B.4    Fabrizio, P.5    Mann, M.6    Luhrmann, R.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.